Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009836

Physical Location & Seq

Genomic Coordinates Forward (+)

35168538 .. 35169402

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0245300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGAGGAGTTGGATGAGATGGTTGTTCGACTGGCAGCTTCTCTTGGACTGGCAAATGTTAGCAGGCCGGTGGATCTTCGTCCGGCTCATGGAGAGGATTTGCGTCGTTCCCAGACGTATCTGGTGGGAAAGTTGTTGACGGCTAGGGCCTTCAATAAGAGATCGTTCGATCATGGCGGGCATGTTCTGTCGTTCATGGAGGAACATGGAGACCGCTTTCTGTTCACCTTGACGGATCCAACATATCGTAACCGGATCCTTCGAGGTGGTCCTTGGGGTTTTGATAGATCTCCGGTTGTCCTAGCACCGTATGATGGGGTGGGGGCGATCAAGGATGTTCCGCTCTCTACTTTAGCCTTCTGGATCAAGGTACGTGGTCTGCCACCAAATTTTCATATTGATCGGTGCTTGAGAAGGATTGGTAGCGCCTTGGGGCGGTATGTGCAGAAGGACACAACAGAATTTGAAGAAGGAAGGATTTGGATCCGAGTTGAGATGGATCTTCTAAAGCCTGTGATCTTCCGACAGAGCTTCACGGTGGATGATGGGTTTGATGCGGATCTGGACTTTTTCTTTGAAAATCTCTATGGCAGATGTCAAGAATGTGGTTTGATTACTCATGTGGGCTTACCATGTGGTGGGACGCCGCTGCCGGTGGAGGCCAGGACTGAGCAATTGCCGGCACGGCGGAATCTTGAAAGGGTTTTGAACTGCGTAGAGTTGTCTCCGCATGTTGGACCATCGATGGTGTTTGGAGCACAGCCGAGTCCACAGGTTGGGCTAGAGAGATTCTTGCCAGCAGCTAAACCAAAGGAGAGAAAGGAGATTAGGCGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

279

Amino Acids

31.57

Weight (kDa)

8.29

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00500 AT4G00500
fragaria_vesca	FvH4_7g14200 FvH4_7g14200 FvH4_7g14200
malus_domestica	MD01G1059200.v1.1
prunus_persica	Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1
pyrus_communis	pycom01g08820
rosa_chinensis	RchiOBHm_Chr1g0355131
rosa_laevigata	RLG00000028175
rosa_multiflora	Rmu_sc0003115.1_g000035 Rmu_sc0004488.1_g000007
rosa_roxburghii	Rroxscaffold_4G00300650
rosa_rugosa	Rorug01G0245300
rosa_samantha	Rh1AG257600 Rh1BG227100 Rh1CG241200 Rh1DG254800
rosa_wichuraiana	Rw1G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	638, 776
AccBSI	CCGCTC	1 cut(s)	343
AciI	CCGC	8 cut(s)	177, 214, 341, 436, 557, 647, 688, 728
AcsI	RAATTY	2 cut(s)	388, 461
AcyI	GRCGYC	1 cut(s)	644
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	6 cut(s)	89, 314, 435, 638, 734, 776
AgsI	TTSAA	5 cut(s)	154, 467, 578, 698, 709
AjnI	CCWGG	1 cut(s)	662
AluBI	AGCT	3 cut(s)	38, 531, 803
AluI	AGCT	3 cut(s)	38, 531, 803
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	2 cut(s)	204, 729
AoxI	GGCC	3 cut(s)	65, 147, 660
ApeKI	GCWGC	3 cut(s)	35, 649, 800
ApoI	RAATTY	2 cut(s)	388, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	147, 269, 737
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	269, 737
BamHI	GGATCC	3 cut(s)	235, 255, 483
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	3 cut(s)	47, 636, 812
BccI	CCATC	6 cut(s)	13, 308, 490, 539, 739, 748
BceAI	ACGGC	2 cut(s)	156, 701
BciT130I	CCWGG	1 cut(s)	664
BcoDI	GTCTC	2 cut(s)	204, 729
BfaI	CTAG	3 cut(s)	144, 302, 782
BfoI	RGCGCY	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	685
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	4 cut(s)	36, 647, 650, 801
BlsI	GCNGC	4 cut(s)	37, 648, 651, 802
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	2 cut(s)	269, 737
BmgT120I	GGNCC	3 cut(s)	147, 269, 737
BmiI	GGNNCC	3 cut(s)	237, 257, 485
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	544
BpuEI	CTTGAG	1 cut(s)	430
Bsa29I	ATCGAT	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	2 cut(s)	482, 558
BsaHI	GRCGYC	1 cut(s)	644
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	272, 429
BsaWI	WCCGGW	2 cut(s)	252, 292
Bsc4I	CCNNNNNNNGG	6 cut(s)	89, 314, 435, 638, 734, 776
Bse118I	RCCGGY	3 cut(s)	67, 652, 679
Bse1I	ACTGG	2 cut(s)	36, 54
Bse8I	GATNNNNATC	2 cut(s)	482, 558
BseBI	CCWGG	1 cut(s)	664
BseCI	ATCGAT	1 cut(s)	743
BseDI	CCNNGG	2 cut(s)	272, 429
BseGI	GGATG	3 cut(s)	19, 340, 547
BseJI	GATNNNNATC	2 cut(s)	482, 558
BseLI	CCNNNNNNNGG	6 cut(s)	89, 314, 435, 638, 734, 776
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	2 cut(s)	36, 54
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	47, 636, 812
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	3 cut(s)	67, 149, 662
BshVI	ATCGAT	1 cut(s)	743
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	6 cut(s)	68, 83, 253, 293, 653, 680
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	6 cut(s)	89, 314, 435, 638, 734, 776
BsmAI	GTCTC	2 cut(s)	204, 729
BsmFI	GGGAC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	67, 149, 662
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	760
BspACI	CCGC	8 cut(s)	177, 214, 341, 436, 557, 647, 688, 728
BspANI	GGCC	3 cut(s)	67, 149, 662
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	743
BspLI	GGNNCC	3 cut(s)	237, 257, 485
BspTNI	GGTCTC	1 cut(s)	204
BsrBI	CCGCTC	1 cut(s)	343
BsrFI	RCCGGY	3 cut(s)	67, 652, 679
BsrI	ACTGG	2 cut(s)	36, 54
BssAI	RCCGGY	3 cut(s)	67, 652, 679
BssECI	CCNNGG	2 cut(s)	272, 429
BssNI	GRCGYC	1 cut(s)	644
BssT1I	CCWWGG	2 cut(s)	272, 429
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	2 cut(s)	309, 538
BstACI	GRCGYC	1 cut(s)	644
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	4 cut(s)	65, 179, 681, 798
BstDEI	CTNAG	1 cut(s)	669
BstF5I	GGATG	3 cut(s)	19, 340, 547
BstH2I	RGCGCY	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	428
BstMAI	GTCTC	2 cut(s)	204, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 685
BstNI	CCWGG	1 cut(s)	664
BstNSI	RCATGY	2 cut(s)	185, 734
BstSCI	CCNGG	1 cut(s)	662
BstV1I	GCAGC	3 cut(s)	47, 636, 812
BstX2I	RGATCY	7 cut(s)	73, 235, 255, 287, 483, 499, 559
BstYI	RGATCY	7 cut(s)	73, 235, 255, 287, 483, 499, 559
Bsu15I	ATCGAT	1 cut(s)	743
BsuRI	GGCC	3 cut(s)	67, 149, 662
BsuTUI	ATCGAT	1 cut(s)	743
BtsCI	GGATG	3 cut(s)	19, 340, 547
Cac8I	GCNNGC	4 cut(s)	65, 179, 681, 798
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	3 cut(s)	67, 652, 679
Cfr13I	GGNCC	3 cut(s)	147, 269, 737
ClaI	ATCGAT	1 cut(s)	743
CseI	GACGC	2 cut(s)	92, 652
Csp6I	GTAC	1 cut(s)	371
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	8 cut(s)	89, 173, 182, 196, 206, 620, 633, 731
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	669
EciI	GGCGGA	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	272, 429
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	269, 737
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	662
EcoT14I	CCWWGG	2 cut(s)	272, 429
ErhI	CCWWGG	2 cut(s)	272, 429
FaeI	CATG	8 cut(s)	92, 176, 185, 199, 209, 623, 636, 734
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	8 cut(s)	88, 172, 181, 195, 205, 619, 632, 730
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	36, 647, 650, 801
FokI	GGATG	3 cut(s)	26, 347, 554
Fsp4HI	GCNGC	4 cut(s)	36, 647, 650, 801
FspBI	CTAG	3 cut(s)	144, 302, 782
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	4 cut(s)	36, 647, 650, 801
HaeII	RGCGCY	1 cut(s)	429
HaeIII	GGCC	3 cut(s)	67, 149, 662
HapII	CCGG	6 cut(s)	68, 83, 253, 293, 653, 680
HgaI	GACGC	2 cut(s)	92, 652
HhaI	GCGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	644
Hin1II	CATG	8 cut(s)	92, 176, 185, 199, 209, 623, 636, 734
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	691, 766, 789
HpaII	CCGG	6 cut(s)	68, 83, 253, 293, 653, 680
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	138, 225, 770
Hpy188I	TCNGA	2 cut(s)	488, 524
Hpy188III	TCNNGA	4 cut(s)	361, 563, 599, 695
Hpy8I	GTNNAC	3 cut(s)	138, 225, 770
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	7 cut(s)	160, 269, 367, 408, 442, 464, 468
HpyCH4III	ACNGT	2 cut(s)	309, 538
HpyCH4IV	ACGT	2 cut(s)	116, 373
HpyCH4V	TGCA	1 cut(s)	445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 685
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	2 cut(s)	116, 373
Hsp92I	GRCGYC	1 cut(s)	644
Hsp92II	CATG	8 cut(s)	92, 176, 185, 199, 209, 623, 636, 734
HspAI	GCGC	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	679
KroNI	GCCGGC	1 cut(s)	681
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	3 cut(s)	47, 636, 812
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	3 cut(s)	144, 302, 782
MaeII	ACGT	2 cut(s)	116, 373
MaeIII	GTNAC	1 cut(s)	248
MbiI	CCGCTC	1 cut(s)	343
MboII	GAAGA	4 cut(s)	68, 479, 494, 511
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	7 cut(s)	73, 235, 255, 287, 483, 499, 559
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	3 cut(s)	388, 461, 674
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	3 cut(s)	263, 547, 715
MnlI	CCTC	4 cut(s)	88, 193, 257, 652
MroNI	GCCGGC	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	6 cut(s)	68, 83, 253, 293, 653, 680
MspR9I	CCNGG	1 cut(s)	664
MunI	CAATTG	1 cut(s)	674
MvaI	CCWGG	1 cut(s)	664
MwoI	GCNNNNNNNGC	2 cut(s)	442, 685
NaeI	GCCGGC	1 cut(s)	681
NgoMIV	GCCGGC	1 cut(s)	679
NlaIII	CATG	8 cut(s)	92, 176, 185, 199, 209, 623, 636, 734
NlaIV	GGNNCC	3 cut(s)	237, 257, 485
NmeAIII	GCCGAG	1 cut(s)	789
NspI	RCATGY	2 cut(s)	185, 734
PdiI	GCCGGC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	691, 789
PflMI	CCANNNNNTGG	2 cut(s)	638, 776
PkrI	GCNGC	4 cut(s)	37, 648, 651, 802
PleI	GAGTC	1 cut(s)	774
PpsI	GAGTC	1 cut(s)	774
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	237, 257, 485
PspPI	GGNCC	3 cut(s)	147, 269, 737
PsuI	RGATCY	7 cut(s)	73, 235, 255, 287, 483, 499, 559
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	4 cut(s)	36, 647, 650, 801
Sau96I	GGNCC	3 cut(s)	147, 269, 737
SchI	GAGTC	1 cut(s)	775
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	760
SetI	ASST	9 cut(s)	40, 119, 230, 268, 372, 376, 533, 777, 805
SfaNI	GCATC	1 cut(s)	544
SinI	GGWCC	2 cut(s)	269, 737
SmlI	CTYRAG	1 cut(s)	409
SmoI	CTYRAG	1 cut(s)	409
Sse9I	AATT	3 cut(s)	388, 461, 674
SsiI	CCGC	8 cut(s)	177, 214, 341, 436, 557, 647, 688, 728
SspMI	CTAG	3 cut(s)	144, 302, 782
StyD4I	CCNGG	1 cut(s)	662
StyI	CCWWGG	2 cut(s)	272, 429
TaaI	ACNGT	2 cut(s)	309, 538
TaiI	ACGT	2 cut(s)	119, 376
TaqI	TCGA	4 cut(s)	28, 168, 262, 743
TasI	AATT	3 cut(s)	388, 461, 674
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	2 cut(s)	691, 789
TseI	GCWGC	3 cut(s)	35, 649, 800
TspDTI	ATGAA	2 cut(s)	184, 383
TspGWI	ACGGA	1 cut(s)	248
Van91I	CCANNNNNTGG	2 cut(s)	638, 776
VpaK11BI	GGWCC	2 cut(s)	269, 737
XapI	RAATTY	2 cut(s)	388, 461
XceI	RCATGY	2 cut(s)	185, 734
XspI	CTAG	3 cut(s)	144, 302, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.