Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009836

Physical Location & Seq

Genomic Coordinates Forward (+)

9758973 .. 9760939

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTCAATCTGCTGTGGGATTCCTATCCTTGAGTCTGTATACTGTCTGGCATGTGCCCGCTGGGTGTGGCTGAAATGCCTCTACACTGCAGGGCGGGAAAGTGAAAACTGGGGTCTGGCTACTGCAGAAGAATTTGAGCCTATCCCTCGTTTTTGTCGCCTAATTCTAGCCGTCTATGAGGAAGATCTTCGTAATCCTCTTTGGGCACCCCCCGGAGGTTATGGCCTTAATCCTGATTGGGTTATCTTACGGAAAGACTATGAAGAAACCCTTGGCCGCGTTCCTCCGTACTTTATATATCTTGATCACGATCATTCTGATATAGTCTTAGCAGTTAGGGGACTCAATTTAGCTAAGGAAAATGATTATGCAGTTATGCTCGACAACAAACTTGGGCAGACAAAATTTGACGGTGGGTATGTCCACAATGGGCTGTTGAAGGCAGCAGAGTGGTTGTTTGATACAGAGCGTGAAATATTGAGGGAATTGGTAATGAAACATCCGAATTATACCGTGACATTTACTGGACATTCCCTTGGGGCTGGTGTGGTGGCATTGATGACGCTAGTGGTGCTTCAGAATCTGAGTAAATTAGGAACTGAGAGGAAGAAGATTAGATGCTATGCTACGGCTCCTGCTAGATGCATGTCACTGAATCTGGCTGTGAGGTATGCAGATGTTATCAACTCTGTTGTACTTCAGGATGATTTCTTACCTCGGATAACAACTGCTTTGGATAACTTGTTCAAATCACTTTTCTGTTTGCCATGTTTTCTTTGCACAATGTGCTTGAAGGAGACATGCACACTGGAACAGAAGATGCTTACTGATCCAAAGAGATTATATGCACCTGGCCGTCTCTATCACATTGTTGAACGAAAGCCCTTCAGATTTGAAAGGTTTCCGCCAGTGGTGAAAACAGCGGTTCCTGTGGATGGGCGGTTTGAGCACATAGTTCTTTCTTGCAATGTTACTTCTGACCATGCCATAATTTGGATAGAGAGAGAAGCACAAAAGGCTTTTGATTTAATGGTTGAGAACGACAGAATTATGGAAGTTCCGGCAAAGCAGAGGATGGAGCGACAAGTTTCCCTTGTTCGTGAACACAGCCAGGAGCACAAGGCAGCTCTTCGGAGAGCTGTAGCTTTGAATATCCCACATGCCTACTCTGATTCGCAGTATGGCACGTTTGCATTCATTGAAACTTTAGAGGGGGAGAATTCTGGAGGATTGAGTGGGGGAACTTGTAAGGCATCATTCAAGAAAAGGAGGGAAAGCTGGGATAATTTCGTCGAGCGGCTTTTCGATGTTGATGAGTCCGGTGACATGGTGTTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

448

Amino Acids

51.05

Weight (kDa)

6.44

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	10 - 75	7.2e-21	Lipase 3 N-terminal region
Lipase_3	PF01764	109 - 243	1.4e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00500 AT4G00500
fragaria_vesca	FvH4_7g14200 FvH4_7g14200 FvH4_7g14200
malus_domestica	MD01G1059200.v1.1
prunus_persica	Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1
pyrus_communis	pycom01g08820
rosa_chinensis	RchiOBHm_Chr1g0355131
rosa_laevigata	RLG00000028175
rosa_multiflora	Rmu_sc0003115.1_g000035 Rmu_sc0004488.1_g000007
rosa_roxburghii	Rroxscaffold_4G00300650
rosa_rugosa	Rorug01G0245300
rosa_samantha	Rh1AG257600 Rh1BG227100 Rh1CG241200 Rh1DG254800
rosa_wichuraiana	Rw1G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	993
AccBSI	CCGCTC	1 cut(s)	1297
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	279
AciI	CCGC	7 cut(s)	58, 94, 277, 905, 923, 940, 1297
AclWI	GGATC	1 cut(s)	824
AcoI	YGGCCR	2 cut(s)	274, 853
AcsI	RAATTY	3 cut(s)	131, 404, 1219
AcuI	CTGAAG	3 cut(s)	560, 683, 871
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	2 cut(s)	290, 696
AfiI	CCNNNNNNNGG	3 cut(s)	215, 935, 993
AgsI	TTSAA	9 cut(s)	439, 748, 793, 875, 896, 1150, 1202, 1261, 1336
AjnI	CCWGG	2 cut(s)	850, 1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AloI	GAACNNNNNNTCC	2 cut(s)	728, 760
AluBI	AGCT	5 cut(s)	353, 1127, 1139, 1145, 1278
AluI	AGCT	5 cut(s)	353, 1127, 1139, 1145, 1278
Alw21I	GWGCWC	2 cut(s)	951, 1119
Alw26I	GTCTC	2 cut(s)	791, 863
AlwI	GGATC	1 cut(s)	824
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	3 cut(s)	223, 274, 853
ApeKI	GCWGC	2 cut(s)	443, 1124
ApoI	RAATTY	3 cut(s)	131, 404, 1219
Asp700I	GAANNNNTTC	2 cut(s)	186, 900
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	925, 1334
BaeGI	GKGCMC	2 cut(s)	58, 208
BanI	GGYRCC	1 cut(s)	205
Bbv12I	GWGCWC	2 cut(s)	951, 1119
BbvI	GCAGC	2 cut(s)	455, 1136
BccI	CCATC	2 cut(s)	929, 1069
BceAI	ACGGC	3 cut(s)	155, 645, 840
BciT130I	CCWGG	2 cut(s)	852, 1112
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	791, 863
BfaI	CTAG	3 cut(s)	167, 566, 639
BfmI	CTRYAG	3 cut(s)	87, 123, 1140
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	4 cut(s)	277, 444, 1125, 1298
BlsI	GCNGC	4 cut(s)	278, 445, 1126, 1299
Bme1390I	CCNGG	3 cut(s)	213, 852, 1112
BmiI	GGNNCC	3 cut(s)	207, 633, 927
BmrFI	CCNGG	3 cut(s)	213, 852, 1112
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	4 cut(s)	608, 632, 810, 1262
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	1245
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	213
BsaBI	GATNNNNATC	2 cut(s)	23, 309
BsaJI	CCNNGG	4 cut(s)	211, 271, 535, 716
BsaWI	WCCGGW	1 cut(s)	1319
Bsc4I	CCNNNNNNNGG	3 cut(s)	215, 935, 993
Bse1I	ACTGG	4 cut(s)	113, 529, 813, 908
Bse3DI	GCAATG	1 cut(s)	973
Bse8I	GATNNNNATC	2 cut(s)	23, 309
BseBI	CCWGG	2 cut(s)	852, 1112
BseDI	CCNNGG	4 cut(s)	211, 271, 535, 716
BseGI	GGATG	4 cut(s)	499, 709, 940, 1080
BseJI	GATNNNNATC	2 cut(s)	23, 309
BseLI	CCNNNNNNNGG	3 cut(s)	215, 935, 993
BseMI	GCAATG	1 cut(s)	973
BseMII	CTCAG	2 cut(s)	575, 591
BseNI	ACTGG	4 cut(s)	113, 529, 813, 908
BseSI	GKGCMC	2 cut(s)	58, 208
BseXI	GCAGC	2 cut(s)	455, 1136
BseYI	CCCAGC	2 cut(s)	60, 1278
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	225, 276, 855
BshNI	GGYRCC	1 cut(s)	205
BsiHKAI	GWGCWC	2 cut(s)	951, 1119
BsiSI	CCGG	3 cut(s)	213, 1061, 1320
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	3 cut(s)	215, 935, 993
BsmAI	GTCTC	2 cut(s)	791, 863
BsmBI	CGTCTC	1 cut(s)	863
BsmFI	GGGAC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	1193
BsnI	GGCC	3 cut(s)	225, 276, 855
Bsp1286I	GDGCHC	4 cut(s)	58, 208, 951, 1119
Bsp143I	GATC	4 cut(s)	184, 304, 310, 829
BspACI	CCGC	7 cut(s)	58, 94, 277, 905, 923, 940, 1297
BspANI	GGCC	3 cut(s)	225, 276, 855
BspCNI	CTCAG	2 cut(s)	576, 592
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	207, 633, 927
BspMAI	CTGCAG	2 cut(s)	91, 127
BspPI	GGATC	1 cut(s)	824
BspQI	GCTCTTC	1 cut(s)	1134
BspT107I	GGYRCC	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	1297
BsrDI	GCAATG	1 cut(s)	973
BsrI	ACTGG	4 cut(s)	113, 529, 813, 908
BssECI	CCNNGG	4 cut(s)	211, 271, 535, 716
BssMI	GATC	4 cut(s)	184, 304, 310, 829
BssNAI	GTATAC	1 cut(s)	40
BssT1I	CCWWGG	2 cut(s)	271, 535
Bst1107I	GTATAC	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	852, 1112
Bst4CI	ACNGT	3 cut(s)	44, 413, 514
Bst6I	CTCTTC	1 cut(s)	1134
BstAPI	GCANNNNNTGC	1 cut(s)	786
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	328, 354, 584, 600
BstF5I	GGATG	4 cut(s)	499, 709, 940, 1080
BstFNI	CGCG	1 cut(s)	279
BstKTI	GATC	4 cut(s)	187, 307, 313, 832
BstMAI	GTCTC	2 cut(s)	791, 863
BstMBI	GATC	4 cut(s)	184, 304, 310, 829
BstMWI	GCNNNNNNNGC	4 cut(s)	571, 786, 946, 1016
BstNI	CCWGG	2 cut(s)	852, 1112
BstNSI	RCATGY	4 cut(s)	54, 649, 804, 1163
BstSCI	CCNGG	3 cut(s)	211, 850, 1110
BstSFI	CTRYAG	3 cut(s)	87, 123, 1140
BstSLI	GKGCMC	2 cut(s)	58, 208
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	455, 1136
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BstZ17I	GTATAC	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	225, 276, 855
BtsCI	GGATG	4 cut(s)	499, 709, 940, 1080
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	4 cut(s)	84, 650, 806, 915
Cac8I	GCNNGC	1 cut(s)	58
CaiI	CAGNNNCTG	1 cut(s)	583
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	2 cut(s)	289, 695
CviAII	CATG	7 cut(s)	51, 646, 768, 801, 983, 1160, 1327
CviQI	GTAC	2 cut(s)	289, 695
DdeI	CTNAG	4 cut(s)	328, 354, 584, 600
DpnI	GATC	4 cut(s)	186, 306, 312, 831
DpnII	GATC	4 cut(s)	184, 304, 310, 829
DraIII	CACNNNGTG	1 cut(s)	786
EaeI	YGGCCR	2 cut(s)	274, 853
Eam1104I	CTCTTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	1134
EciI	GGCGGA	1 cut(s)	894
Eco130I	CCWWGG	2 cut(s)	271, 535
Eco57I	CTGAAG	3 cut(s)	560, 683, 871
EcoRI	GAATTC	1 cut(s)	1219
EcoRII	CCWGG	2 cut(s)	850, 1110
EcoT14I	CCWWGG	2 cut(s)	271, 535
EcoT22I	ATGCAT	1 cut(s)	647
ErhI	CCWWGG	2 cut(s)	271, 535
Esp3I	CGTCTC	1 cut(s)	863
FaeI	CATG	7 cut(s)	54, 649, 771, 804, 986, 1163, 1330
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 1077, 1109
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	7 cut(s)	50, 645, 767, 800, 982, 1159, 1326
FauI	CCCGC	2 cut(s)	65, 87
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	277, 444, 1125, 1298
FokI	GGATG	4 cut(s)	486, 716, 947, 1087
Fsp4HI	GCNGC	4 cut(s)	277, 444, 1125, 1298
FspBI	CTAG	3 cut(s)	167, 566, 639
GluI	GCNGC	4 cut(s)	277, 444, 1125, 1298
GsaI	CCCAGC	2 cut(s)	64, 1282
GsuI	CTGGAG	1 cut(s)	1245
HaeIII	GGCC	3 cut(s)	225, 276, 855
HapII	CCGG	3 cut(s)	213, 1061, 1320
HgaI	GACGC	1 cut(s)	571
Hin1II	CATG	7 cut(s)	54, 649, 771, 804, 986, 1163, 1330
HinfI	GANTC	7 cut(s)	19, 32, 342, 580, 655, 1172, 1316
HpaII	CCGG	3 cut(s)	213, 1061, 1320
HphI	GGTGA	2 cut(s)	925, 1334
Hpy166II	GTNNAC	3 cut(s)	40, 424, 1103
Hpy188I	TCNGA	9 cut(s)	319, 504, 579, 585, 720, 890, 979, 1134, 1171
Hpy188III	TCNNGA	8 cut(s)	233, 302, 308, 701, 1100, 1224, 1261, 1336
Hpy8I	GTNNAC	3 cut(s)	40, 424, 1103
Hpy99I	CGWCG	1 cut(s)	1295
HpyAV	CCTTC	3 cut(s)	433, 787, 895
HpyCH4III	ACNGT	3 cut(s)	44, 413, 514
HpyCH4IV	ACGT	1 cut(s)	1187
HpyF10VI	GCNNNNNNNGC	4 cut(s)	571, 786, 946, 1016
HpyF3I	CTNAG	4 cut(s)	328, 354, 584, 600
HpySE526I	ACGT	1 cut(s)	1187
Hsp92II	CATG	7 cut(s)	54, 649, 771, 804, 986, 1163, 1330
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	184, 304, 310, 829
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	3 cut(s)	637, 1078, 1114
Lsp1109I	GCAGC	2 cut(s)	455, 1136
LweI	GCATC	4 cut(s)	608, 632, 810, 1262
MaeI	CTAG	3 cut(s)	167, 566, 639
MaeII	ACGT	1 cut(s)	1187
MaeIII	GTNAC	4 cut(s)	514, 648, 970, 1322
MalI	GATC	4 cut(s)	186, 306, 312, 831
MbiI	CCGCTC	1 cut(s)	1297
MboI	GATC	4 cut(s)	184, 304, 310, 829
MboII	GAAGA	8 cut(s)	140, 179, 194, 275, 619, 622, 829, 1121
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	4 cut(s)	58, 208, 951, 1119
MlyI	GAGTC	3 cut(s)	41, 336, 1325
Mph1103I	ATGCAT	1 cut(s)	647
MroXI	GAANNNNTTC	2 cut(s)	186, 900
MseI	TTAA	2 cut(s)	228, 1028
MspA1I	CMGCKG	2 cut(s)	60, 923
MspI	CCGG	3 cut(s)	213, 1061, 1320
MspR9I	CCNGG	3 cut(s)	213, 852, 1112
Mva1269I	GAATGC	1 cut(s)	1193
MvaI	CCWGG	2 cut(s)	852, 1112
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	571, 786, 946, 1016
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	4 cut(s)	184, 304, 310, 829
NlaIII	CATG	7 cut(s)	54, 649, 771, 804, 986, 1163, 1330
NlaIV	GGNNCC	3 cut(s)	207, 633, 927
NmuCI	GTSAC	3 cut(s)	514, 648, 1322
NsiI	ATGCAT	1 cut(s)	647
NspI	RCATGY	4 cut(s)	54, 649, 804, 1163
PciSI	GCTCTTC	1 cut(s)	1134
PctI	GAATGC	1 cut(s)	1193
PdmI	GAANNNNTTC	2 cut(s)	186, 900
PfeI	GAWTC	4 cut(s)	19, 580, 655, 1172
PflMI	CCANNNNNTGG	1 cut(s)	993
PkrI	GCNGC	4 cut(s)	278, 445, 1126, 1299
PleI	GAGTC	3 cut(s)	40, 336, 1324
PpsI	GAGTC	3 cut(s)	40, 336, 1324
Psp6I	CCWGG	2 cut(s)	850, 1110
PspFI	CCCAGC	2 cut(s)	60, 1278
PspGI	CCWGG	2 cut(s)	850, 1110
PspN4I	GGNNCC	3 cut(s)	207, 633, 927
PstI	CTGCAG	2 cut(s)	91, 127
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	290, 696
RsaNI	GTAC	2 cut(s)	289, 695
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	2 cut(s)	228, 1028
SatI	GCNGC	4 cut(s)	277, 444, 1125, 1298
Sau3AI	GATC	4 cut(s)	184, 304, 310, 829
SchI	GAGTC	3 cut(s)	41, 336, 1325
ScrFI	CCNGG	3 cut(s)	213, 852, 1112
SduI	GDGCHC	4 cut(s)	58, 208, 951, 1119
SfaNI	GCATC	4 cut(s)	608, 632, 810, 1262
SfcI	CTRYAG	3 cut(s)	87, 123, 1140
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	7 cut(s)	58, 94, 277, 905, 923, 940, 1297
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	3 cut(s)	167, 566, 639
StyD4I	CCNGG	3 cut(s)	211, 850, 1110
StyI	CCWWGG	2 cut(s)	271, 535
TaaI	ACNGT	3 cut(s)	44, 413, 514
TaiI	ACGT	1 cut(s)	1190
TaqI	TCGA	3 cut(s)	381, 1293, 1305
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	2 cut(s)	279, 1300
TfiI	GAWTC	4 cut(s)	19, 580, 655, 1172
Tru1I	TTAA	2 cut(s)	228, 1028
Tru9I	TTAA	2 cut(s)	228, 1028
TscAI	CASTG	4 cut(s)	91, 657, 813, 915
TseFI	GTSAC	3 cut(s)	514, 648, 1322
TseI	GCWGC	2 cut(s)	443, 1124
Tsp45I	GTSAC	3 cut(s)	514, 648, 1322
TspDTI	ATGAA	3 cut(s)	276, 509, 1186
TspGWI	ACGGA	2 cut(s)	265, 276
TspRI	CASTG	4 cut(s)	91, 657, 813, 915
Van91I	CCANNNNNTGG	1 cut(s)	993
XapI	RAATTY	3 cut(s)	131, 404, 1219
XceI	RCATGY	4 cut(s)	54, 649, 804, 1163
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	186, 900
XspI	CTAG	3 cut(s)	167, 566, 639
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.