Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009836

Physical Location & Seq

Genomic Coordinates Forward (+)

21714887 .. 21718761

Gene Structure 3875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G169800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTCAATCTGCTGTGGGATTCCTATCCTTGAGTCTGTATACTGTCTGGCCTGTGCTCGTTGGGTGTGGCTGAAATGCCTCTACACTGCAGGCCGTGAAAGTGAAAACTGGGGTCTGGCCACTGCTGAAGAATTTGAGCCTGTCCCTCGTTTTTGTCGCCTAATTCTAGCACTCTATGAGGAAGATCTCCGTAACCCGCTTTGGGCACCCCTCGGAGGTTATGGCATTAATCCTGATTGGGTAATCTTACGTAAAGACTACGAAGAAACCTTTGGCCATGTTCCTCCCTACATGATCTATCTTGATCATGATCATTCTGATATAGTCTTGGTAGTTAGGGGACTCAATTTAGCCAAGGAAAGTGATTATGCGGTTATGCTTGACAACAAACTTGGGCAGACAAAATTTGATGGTGGCTATGTCCACAATGGGCTATTGAAAGCAGCAGAGTGGATGTTTGATGCAGAGTGTGAAGTTTTGAGGGAATTGGTAATGAAGTATGCAAATTATACCCTGACATTTACTGGACATTCACTTGGGGCTGGTGTGGTGGCATTGCTGACATTGTTGGTACTTCAGGATCTGAAAAAATTGGGAAATATTGAGAGGAAGAAGATTAGATGCTATGCTACAGCCCCCTCTAGATGTATGTCACTGAATCTGGCTGTCAGATATGCAGATGTTATCAATTCTATTGTACTTCAGGATGATTTCTTACCTCGGACAACAACCGCTTTAGACAACTTATTCAAATCACTTTTCTGTTTGCCATGTCTACTTTGCATAATGTGCTTGAAGGAAACGTGCACGCTGGAAGAGAATATGCTTACAGATCCAAGGAGATTATATGCACCCGGGCGTCTCTATCACATTATTGAGCGGAAGCCCTTCAGATTTGGAAGGTTTCCGCCTGTTGTGAAAACAGCAGTGCCTGTGGATGGGAGGTTTGAGCACATAGTTCTTTCTTGCAATATTACTTCTGACCATGCCATAATCTGGATAGAGAGAGAAGCACAAAAGGCTTTTGATTTAATGCTCGAGGAAGACAGAACTATGGAAGTTCCGGCAAAGCAGAGGATGGAGCGAAGAAAGTCCCTTGTCCGTGAACATAGCCTGGAGTACGAGGCAGCACTTCGGAGAGCAATAGCTTTGGATATCCATCACGCCTACTCTGATTCACCGTATGGAACATTTACATTTACTGAAACGGAAGAGGGGGAGAACTCTGGAAGATCAAACGGGGAGACTCCTTGTGAATCATTAAAAAGGAGGACAGAAAGCTGGGATGACTTTGTGGAGCGGCTTTTCGATGTAGATGAGTCTGGTGACATGGTGTTCAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

449

Amino Acids

51.42

Weight (kDa)

5.45

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00500 AT4G00500
fragaria_vesca	FvH4_7g14200 FvH4_7g14200 FvH4_7g14200
malus_domestica	MD01G1059200.v1.1
prunus_persica	Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1
pyrus_communis	pycom01g08820
rosa_chinensis	RchiOBHm_Chr1g0355131
rosa_laevigata	RLG00000028175
rosa_multiflora	Rmu_sc0003115.1_g000035 Rmu_sc0004488.1_g000007
rosa_roxburghii	Rroxscaffold_4G00300650
rosa_rugosa	Rorug01G0245300
rosa_samantha	Rh1AG257600 Rh1BG227100 Rh1CG241200 Rh1DG254800
rosa_wichuraiana	Rw1G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	996
AccBSI	CCGCTC	2 cut(s)	880, 1300
AccI	GTMKAC	2 cut(s)	39, 775
AciI	CCGC	6 cut(s)	197, 371, 732, 880, 908, 1300
AclWI	GGATC	2 cut(s)	588, 827
AcoI	YGGCCR	2 cut(s)	117, 274
AcsI	RAATTY	2 cut(s)	131, 404
AcuI	CTGAAG	4 cut(s)	147, 560, 686, 874
AcyI	GRCGYC	1 cut(s)	859
AfaI	GTAC	3 cut(s)	573, 699, 1121
AfiI	CCNNNNNNNGG	4 cut(s)	202, 215, 938, 996
AgsI	TTSAA	4 cut(s)	439, 751, 796, 1339
AjnI	CCWGG	1 cut(s)	1113
AjuI	GAANNNNNNNTTGG	2 cut(s)	255, 287
AluBI	AGCT	2 cut(s)	1148, 1281
AluI	AGCT	2 cut(s)	1148, 1281
Alw21I	GWGCWC	3 cut(s)	58, 809, 954
Alw26I	GTCTC	2 cut(s)	866, 1238
Alw44I	GTGCAC	1 cut(s)	805
AlwI	GGATC	2 cut(s)	588, 827
AlwNI	CAGNNNCTG	2 cut(s)	583, 932
Ama87I	CYCGRG	2 cut(s)	854, 1037
AoxI	GGCC	4 cut(s)	48, 91, 117, 274
ApaLI	GTGCAC	1 cut(s)	805
ApeKI	GCWGC	2 cut(s)	443, 1127
ApoI	RAATTY	2 cut(s)	131, 404
AseI	ATTAAT	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	887
AsuC2I	CCSGG	2 cut(s)	855, 856
AsuHPI	GGTGA	2 cut(s)	1170, 1337
AvaI	CYCGRG	2 cut(s)	854, 1037
BaeGI	GKGCMC	2 cut(s)	208, 809
BalI	TGGCCA	2 cut(s)	119, 276
BanI	GGYRCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	3 cut(s)	58, 809, 954
BbvI	GCAGC	2 cut(s)	455, 1139
BccI	CCATC	4 cut(s)	404, 932, 1072, 1167
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	1115
BclI	TGATCA	2 cut(s)	304, 310
BcnI	CCSGG	2 cut(s)	855, 856
BcoDI	GTCTC	2 cut(s)	866, 1238
BfaI	CTAG	2 cut(s)	167, 642
BfmI	CTRYAG	2 cut(s)	87, 630
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	3 cut(s)	444, 1128, 1301
BlsI	GCNGC	3 cut(s)	445, 1129, 1302
Bme1390I	CCNGG	3 cut(s)	855, 856, 1115
BmeT110I	CYCGRG	2 cut(s)	854, 1037
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	3 cut(s)	855, 856, 1115
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	451, 611
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	1050
BpmI	CTGGAG	1 cut(s)	1136
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	2 cut(s)	855, 856
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	3 cut(s)	23, 309, 1158
BsaHI	GRCGYC	1 cut(s)	859
BsaJI	CCNNGG	5 cut(s)	211, 354, 719, 836, 854
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 215, 938, 996
Bse1I	ACTGG	2 cut(s)	113, 529
Bse3DI	GCAATG	1 cut(s)	554
Bse8I	GATNNNNATC	3 cut(s)	23, 309, 1158
BseBI	CCWGG	1 cut(s)	1115
BseDI	CCNNGG	5 cut(s)	211, 354, 719, 836, 854
BseGI	GGATG	5 cut(s)	459, 712, 943, 1083, 1291
BseJI	GATNNNNATC	3 cut(s)	23, 309, 1158
BseLI	CCNNNNNNNGG	4 cut(s)	202, 215, 938, 996
BseMI	GCAATG	1 cut(s)	554
BseNI	ACTGG	2 cut(s)	113, 529
BseSI	GKGCMC	2 cut(s)	208, 809
BseXI	GCAGC	2 cut(s)	455, 1139
BseYI	CCCAGC	1 cut(s)	1281
BshFI	GGCC	4 cut(s)	50, 93, 119, 276
BshNI	GGYRCC	1 cut(s)	205
BsiHKAI	GWGCWC	3 cut(s)	58, 809, 954
BsiHKCI	CYCGRG	2 cut(s)	854, 1037
BsiSI	CCGG	2 cut(s)	855, 1064
BslFI	GGGAC	3 cut(s)	128, 354, 1078
BslI	CCNNNNNNNGG	4 cut(s)	202, 215, 938, 996
BsmAI	GTCTC	2 cut(s)	866, 1238
BsmBI	CGTCTC	1 cut(s)	866
BsmFI	GGGAC	3 cut(s)	128, 354, 1078
BsnI	GGCC	4 cut(s)	50, 93, 119, 276
BsoBI	CYCGRG	2 cut(s)	854, 1037
Bsp1286I	GDGCHC	4 cut(s)	58, 208, 809, 954
Bsp143I	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
BspACI	CCGC	6 cut(s)	197, 371, 732, 880, 908, 1300
BspANI	GGCC	4 cut(s)	50, 93, 119, 276
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	1 cut(s)	91
BspPI	GGATC	2 cut(s)	588, 827
BspT107I	GGYRCC	1 cut(s)	205
BsrBI	CCGCTC	2 cut(s)	880, 1300
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	113, 529
BssECI	CCNNGG	5 cut(s)	211, 354, 719, 836, 854
BssMI	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
BssNAI	GTATAC	1 cut(s)	40
BssNI	GRCGYC	1 cut(s)	859
BssT1I	CCWWGG	2 cut(s)	354, 836
Bst1107I	GTATAC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	1115
Bst4CI	ACNGT	2 cut(s)	44, 1182
Bst6I	CTCTTC	2 cut(s)	810, 1206
BstACI	GRCGYC	1 cut(s)	859
BstAPI	GCANNNNNTGC	1 cut(s)	789
BstBAI	YACGTR	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	91, 809
BstF5I	GGATG	5 cut(s)	459, 712, 943, 1083, 1291
BstKTI	GATC	7 cut(s)	187, 297, 307, 313, 583, 835, 1235
BstMAI	GTCTC	2 cut(s)	866, 1238
BstMBI	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
BstMWI	GCNNNNNNNGC	2 cut(s)	789, 1019
BstNI	CCWGG	1 cut(s)	1115
BstSCI	CCNGG	3 cut(s)	853, 854, 1113
BstSFI	CTRYAG	2 cut(s)	87, 630
BstSLI	GKGCMC	2 cut(s)	208, 809
BstSNI	TACGTA	1 cut(s)	251
BstV1I	GCAGC	2 cut(s)	455, 1139
BstV2I	GAAGAC	1 cut(s)	1050
BstX2I	RGATCY	3 cut(s)	184, 580, 832
BstYI	RGATCY	3 cut(s)	184, 580, 832
BstZ17I	GTATAC	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	50, 93, 119, 276
BtsCI	GGATG	5 cut(s)	459, 712, 943, 1083, 1291
BtsI	GCAGTG	3 cut(s)	84, 120, 933
BtsIMutI	CAGTG	4 cut(s)	84, 120, 653, 933
Cac8I	GCNNGC	2 cut(s)	91, 809
CaiI	CAGNNNCTG	2 cut(s)	583, 932
CciI	TCATGA	1 cut(s)	307
Cfr9I	CCCGGG	1 cut(s)	854
CseI	GACGC	1 cut(s)	848
Csp6I	GTAC	3 cut(s)	572, 698, 1120
CviAII	CATG	6 cut(s)	278, 292, 308, 771, 986, 1330
CviQI	GTAC	3 cut(s)	572, 698, 1120
DpnI	GATC	7 cut(s)	186, 296, 306, 312, 582, 834, 1234
DpnII	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
EaeI	YGGCCR	2 cut(s)	117, 274
Eam1104I	CTCTTC	2 cut(s)	810, 1206
EarI	CTCTTC	2 cut(s)	810, 1206
EciI	GGCGGA	1 cut(s)	897
Eco105I	TACGTA	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	354, 836
Eco32I	GATATC	1 cut(s)	1156
Eco57I	CTGAAG	4 cut(s)	147, 560, 686, 874
Eco88I	CYCGRG	2 cut(s)	854, 1037
EcoRII	CCWGG	1 cut(s)	1113
EcoRV	GATATC	1 cut(s)	1156
EcoT14I	CCWWGG	2 cut(s)	354, 836
ErhI	CCWWGG	2 cut(s)	354, 836
Esp3I	CGTCTC	1 cut(s)	866
FaeI	CATG	6 cut(s)	281, 295, 311, 774, 989, 1333
FaqI	GGGAC	3 cut(s)	128, 354, 1078
FatI	CATG	6 cut(s)	277, 291, 307, 770, 985, 1329
FauI	CCCGC	1 cut(s)	204
FbaI	TGATCA	2 cut(s)	304, 310
FblI	GTMKAC	2 cut(s)	39, 775
Fnu4HI	GCNGC	3 cut(s)	444, 1128, 1301
FokI	GGATG	5 cut(s)	466, 719, 950, 1090, 1298
Fsp4HI	GCNGC	3 cut(s)	444, 1128, 1301
FspBI	CTAG	2 cut(s)	167, 642
GluI	GCNGC	3 cut(s)	444, 1128, 1301
GsaI	CCCAGC	1 cut(s)	1285
GsuI	CTGGAG	1 cut(s)	1136
HaeIII	GGCC	4 cut(s)	50, 93, 119, 276
HapII	CCGG	2 cut(s)	855, 1064
HgaI	GACGC	1 cut(s)	848
Hin1I	GRCGYC	1 cut(s)	859
Hin1II	CATG	6 cut(s)	281, 295, 311, 774, 989, 1333
HinfI	GANTC	8 cut(s)	19, 32, 342, 658, 1175, 1246, 1256, 1319
HpaII	CCGG	2 cut(s)	855, 1064
HphI	GGTGA	2 cut(s)	1170, 1337
Hpy166II	GTNNAC	5 cut(s)	40, 424, 776, 807, 1106
Hpy188I	TCNGA	9 cut(s)	215, 319, 585, 671, 723, 893, 982, 1137, 1174
Hpy188III	TCNNGA	9 cut(s)	233, 302, 308, 578, 642, 704, 997, 1227, 1339
Hpy8I	GTNNAC	5 cut(s)	40, 424, 776, 807, 1106
HpyAV	CCTTC	3 cut(s)	790, 894, 898
HpyCH4III	ACNGT	2 cut(s)	44, 1182
HpyCH4IV	ACGT	2 cut(s)	250, 803
HpyCH4V	TGCA	8 cut(s)	89, 464, 503, 677, 783, 807, 851, 969
HpyF10VI	GCNNNNNNNGC	2 cut(s)	789, 1019
HpySE526I	ACGT	2 cut(s)	250, 803
Hsp92I	GRCGYC	1 cut(s)	859
Hsp92II	CATG	6 cut(s)	281, 295, 311, 774, 989, 1333
Ksp22I	TGATCA	2 cut(s)	304, 310
Kzo9I	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
LmnI	GCTCC	2 cut(s)	1081, 1297
Lsp1109I	GCAGC	2 cut(s)	455, 1139
LweI	GCATC	2 cut(s)	451, 611
MaeI	CTAG	2 cut(s)	167, 642
MaeII	ACGT	2 cut(s)	250, 803
MaeIII	GTNAC	3 cut(s)	191, 651, 1325
MalI	GATC	7 cut(s)	186, 296, 306, 312, 582, 834, 1234
MbiI	CCGCTC	2 cut(s)	880, 1300
MboI	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
MflI	RGATCY	3 cut(s)	184, 580, 832
MhlI	GDGCHC	4 cut(s)	58, 208, 809, 954
MlsI	TGGCCA	2 cut(s)	119, 276
MluCI	AATT	8 cut(s)	131, 162, 346, 404, 485, 505, 590, 688
MluNI	TGGCCA	2 cut(s)	119, 276
MlyI	GAGTC	4 cut(s)	41, 336, 1240, 1328
Mox20I	TGGCCA	2 cut(s)	119, 276
MroXI	GAANNNNTTC	1 cut(s)	887
MscI	TGGCCA	2 cut(s)	119, 276
MseI	TTAA	3 cut(s)	228, 1031, 1262
Msp20I	TGGCCA	2 cut(s)	119, 276
MspI	CCGG	2 cut(s)	855, 1064
MspR9I	CCNGG	3 cut(s)	855, 856, 1115
MvaI	CCWGG	1 cut(s)	1115
MwoI	GCNNNNNNNGC	2 cut(s)	789, 1019
NciI	CCSGG	2 cut(s)	855, 856
NdeII	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
NlaIII	CATG	6 cut(s)	281, 295, 311, 774, 989, 1333
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	651, 1325
PaeR7I	CTCGAG	1 cut(s)	1037
PagI	TCATGA	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	4 cut(s)	19, 658, 1175, 1256
PflMI	CCANNNNNTGG	1 cut(s)	996
PkrI	GCNGC	3 cut(s)	445, 1129, 1302
PleI	GAGTC	4 cut(s)	40, 336, 1240, 1327
PpsI	GAGTC	4 cut(s)	40, 336, 1240, 1327
Ppu21I	YACGTR	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	1113
PspFI	CCCAGC	1 cut(s)	1281
PspGI	CCWGG	1 cut(s)	1113
PspN4I	GGNNCC	1 cut(s)	207
PspXI	VCTCGAGB	1 cut(s)	1037
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	2 cut(s)	583, 932
PsuI	RGATCY	3 cut(s)	184, 580, 832
RsaI	GTAC	3 cut(s)	573, 699, 1121
RsaNI	GTAC	3 cut(s)	572, 698, 1120
SaqAI	TTAA	3 cut(s)	228, 1031, 1262
SatI	GCNGC	3 cut(s)	444, 1128, 1301
Sau3AI	GATC	7 cut(s)	184, 294, 304, 310, 580, 832, 1232
SchI	GAGTC	4 cut(s)	41, 336, 1240, 1328
ScrFI	CCNGG	3 cut(s)	855, 856, 1115
SduI	GDGCHC	4 cut(s)	58, 208, 809, 954
SetI	ASST	9 cut(s)	220, 253, 272, 721, 806, 905, 947, 1150, 1283
SfaNI	GCATC	2 cut(s)	451, 611
SfcI	CTRYAG	2 cut(s)	87, 630
Sfr274I	CTCGAG	1 cut(s)	1037
SlaI	CTCGAG	1 cut(s)	1037
SmaI	CCCGGG	1 cut(s)	856
SmlI	CTYRAG	2 cut(s)	29, 1037
SmoI	CTYRAG	2 cut(s)	29, 1037
SnaBI	TACGTA	1 cut(s)	251
Sse9I	AATT	8 cut(s)	131, 162, 346, 404, 485, 505, 590, 688
SsiI	CCGC	6 cut(s)	197, 371, 732, 880, 908, 1300
SspI	AATATT	2 cut(s)	601, 973
SspMI	CTAG	2 cut(s)	167, 642
StyD4I	CCNGG	3 cut(s)	853, 854, 1113
StyI	CCWWGG	2 cut(s)	354, 836
TaaI	ACNGT	2 cut(s)	44, 1182
TaiI	ACGT	2 cut(s)	253, 806
TaqI	TCGA	2 cut(s)	1038, 1308
TasI	AATT	8 cut(s)	131, 162, 346, 404, 485, 505, 590, 688
TatI	WGTACW	1 cut(s)	697
TauI	GCSGC	1 cut(s)	1303
TfiI	GAWTC	4 cut(s)	19, 658, 1175, 1256
Tru1I	TTAA	3 cut(s)	228, 1031, 1262
Tru9I	TTAA	3 cut(s)	228, 1031, 1262
TscAI	CASTG	4 cut(s)	91, 127, 660, 933
TseFI	GTSAC	2 cut(s)	651, 1325
TseI	GCWGC	2 cut(s)	443, 1127
Tsp45I	GTSAC	2 cut(s)	651, 1325
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	3 cut(s)	179, 1091, 1223
TspMI	CCCGGG	1 cut(s)	854
TspRI	CASTG	4 cut(s)	91, 127, 660, 933
Van91I	CCANNNNNTGG	1 cut(s)	996
VneI	GTGCAC	1 cut(s)	805
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	2 cut(s)	131, 404
XbaI	TCTAGA	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	1037
XmaI	CCCGGG	1 cut(s)	854
XmiI	GTMKAC	2 cut(s)	39, 775
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	2 cut(s)	167, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.