Rh1BG227100

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
34683401 .. 34686939
3539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG227100.1

Sequence Viewer

Length: 1350 bp
ATGTCAATCTTCTGTGGGATTCCCATCCTTGAGTCTGTATACTGTCTGGCGTGTGCTCGTTGGGTGTGGTTGAAATGCCTTTACACGGCAGGCCATGAGAGTGAGAACTGGGGTCTAGCCACCGCTGAAGAGTTTGAGCCCATCCCTCGCTTTTGCAAACTAATTTTATCTGTCTATGAGGATGATCTCCGTAACCCAATGTGGGCACCTCCCGGAGGGTATGGTATGGATCCTGATTGGGTAATCTTACGTAAAGGCTATGAAGAAACACATGGCCGAGTTCCTCCTTACACTGTCTATCTTGATCATGATCATTCTGATATAGTCTTGGTAGTTAGGGGACTCAATATGGCCAAGGAAAGTGATTATTTAGTTATGCTTGATAACAACCTTGGGCAGACAAAATTTGATGGTGGGTATGTCCACAATGGGTTATTGAAGGCAGCAGAGTGGCTGTTTGATACAGAGTATGAGTTTTTGAGGGAATTGGTATTAAAAAATCCAAAGTATACCCTGACATTTATTGGACATTCCCTGGGCTCTGGTGTGGTGGCATTGCTGACTCTGGTAGCGCTTCAGAACAGAAGCAAATTGGGAATTGTTGAGAGGAAAAAGATTAGATGCTATGCCACCGCTCCGGCTAGATGTATGTCATTGAATCTGGCCGTGAGATATGCAGATGTTATCAATTCTATTGTTCTCCAGGACGATTTCTTACCTCGGACAACAACTTCTTTAGCGGATTTATTCAAATCACTTTTCTGTTTGCCATGTTTACTGTGCATAACGTGCTTGAAGGATACATGCACACTGGAAGAGAGGATGTTCACAGATCCAAGGAGACTCTATGCACCTGGTCGGCTCTATCACATTGTTGAGCGGAAGCCCTTCAGATTAGGAAGGTTTCCCCCAGTTGTGAGAACAGCAGTGCCTGTGGATGGGAGGTTTGAGCAAGTAGTTCTTTCTTGCCATGCTACTACTGACCACGCGATAGTCTGGATTGAGAGAGAATCACAAAAGGCTTTTGATATAATGATGGACAGAGATCGAATAATGGATGTGCCGGCTAAGCAGAGGATGGAGAGAAAAGAATCCCTTGATCGTGGACACAGCCAGGAGCATGAGGCAGCACTTCGGAAAGCCATAGCTTTGGATATCCCTCATGCCTTCCCTACTTCACCATATGGAACATTTACATTGAGTGAAACGGAAGAGGCAGAGAACTCTGGCAAATCCACTGGGGGGAGTCCCTCTGCGCCACTAAAGAAAAGGAGTGAAAGCTGGGATGATTTCGTAGAGCGGCTATTTGATGTGGATGAGTCTGGTAACATGATGATCAAGAAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

51.06

Weight (kDa)

6.0

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 10 - 74 2e-22 Lipase 3 N-terminal region
Lipase_3 PF01764 109 - 244 6.4e-23 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 205
AccBSI CCGCTC 3 cut(s) 635, 880, 1300
AccI GTMKAC 2 cut(s) 39, 509
AccII CGCG 1 cut(s) 989
AciI CCGC 5 cut(s) 123, 633, 740, 880, 1300
AclWI GGATC 3 cut(s) 224, 237, 827
AcoI YGGCCR 3 cut(s) 274, 351, 663
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 3 cut(s) 147, 560, 874
AfeI AGCGCT 1 cut(s) 573
AfiI CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
AgsI TTSAA 5 cut(s) 73, 439, 658, 751, 796
AjnI CCWGG 4 cut(s) 534, 702, 853, 1113
AluBI AGCT 2 cut(s) 1148, 1281
AluI AGCT 2 cut(s) 1148, 1281
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 3 cut(s) 224, 237, 827
AlwNI CAGNNNCTG 1 cut(s) 932
Aor51HI AGCGCT 1 cut(s) 573
AoxI GGCC 4 cut(s) 91, 274, 351, 663
ApeKI GCWGC 2 cut(s) 443, 1127
ApoI RAATTY 1 cut(s) 404
Asp700I GAANNNNTTC 1 cut(s) 887
AspLEI GCGC 2 cut(s) 574, 1258
AsuC2I CCSGG 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 1170
BaeGI GKGCMC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 353
BamHI GGATCC 1 cut(s) 229
BanI GGYRCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 141, 542
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 455, 1139
BccI CCATC 6 cut(s) 32, 149, 404, 932, 1030, 1072
BceAI ACGGC 2 cut(s) 102, 650
BciT130I CCWGG 4 cut(s) 536, 704, 855, 1115
BciVI GTATCC 1 cut(s) 793
BclI TGATCA 3 cut(s) 304, 310, 1335
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 2 cut(s) 116, 642
BfoI RGCGCY 1 cut(s) 575
BfuI GTATCC 1 cut(s) 793
BisI GCNGC 3 cut(s) 444, 1128, 1301
BlpI GCTNAGC 1 cut(s) 1068
BlsI GCNGC 3 cut(s) 445, 1129, 1302
Bme1390I CCNGG 5 cut(s) 213, 536, 704, 855, 1115
BmiI GGNNCC 2 cut(s) 207, 231
BmrFI CCNGG 5 cut(s) 213, 536, 704, 855, 1115
BmrI ACTGGG 3 cut(s) 118, 905, 1248
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 3 cut(s) 118, 905, 1248
BpmI CTGGAG 1 cut(s) 686
Bpu1102I GCTNAGC 1 cut(s) 1068
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 213
BsaAI YACGTR 1 cut(s) 251
BsaBI GATNNNNATC 2 cut(s) 23, 309
BsaJI CCNNGG 6 cut(s) 354, 391, 534, 535, 719, 836
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
Bse118I RCCGGY 1 cut(s) 1063
Bse1I ACTGG 4 cut(s) 113, 816, 911, 1243
Bse3DI GCAATG 1 cut(s) 554
Bse8I GATNNNNATC 2 cut(s) 23, 309
BseBI CCWGG 4 cut(s) 536, 704, 855, 1115
BseDI CCNNGG 6 cut(s) 354, 391, 534, 535, 719, 836
BseGI GGATG 9 cut(s) 24, 141, 187, 828, 943, 1063, 1083, 1291, 1321
BseJI GATNNNNATC 2 cut(s) 23, 309
BseLI CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
BseMI GCAATG 1 cut(s) 554
BseNI ACTGG 4 cut(s) 113, 816, 911, 1243
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 455, 1139
BseYI CCCAGC 1 cut(s) 1281
Bsh1236I CGCG 1 cut(s) 989
BshFI GGCC 4 cut(s) 93, 276, 353, 665
BshNI GGYRCC 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 3 cut(s) 213, 638, 1064
BslFI GGGAC 2 cut(s) 354, 1233
BslI CCNNNNNNNGG 5 cut(s) 85, 202, 215, 938, 1242
BsmAI GTCTC 1 cut(s) 835
BsmFI GGGAC 2 cut(s) 354, 1233
BsnI GGCC 4 cut(s) 93, 276, 353, 665
Bsp1286I GDGCHC 4 cut(s) 58, 141, 208, 542
Bsp143I GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
Bsp1720I GCTNAGC 1 cut(s) 1068
BspACI CCGC 5 cut(s) 123, 633, 740, 880, 1300
BspANI GGCC 4 cut(s) 93, 276, 353, 665
BspFNI CGCG 1 cut(s) 989
BspHI TCATGA 2 cut(s) 307, 1346
BspLI GGNNCC 2 cut(s) 207, 231
BspPI GGATC 3 cut(s) 224, 237, 827
BspT107I GGYRCC 1 cut(s) 205
BsrBI CCGCTC 3 cut(s) 635, 880, 1300
BsrDI GCAATG 1 cut(s) 554
BsrFI RCCGGY 1 cut(s) 1063
BsrI ACTGG 4 cut(s) 113, 816, 911, 1243
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 6 cut(s) 354, 391, 534, 535, 719, 836
BssMI GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
BssNAI GTATAC 2 cut(s) 40, 510
BssT1I CCWWGG 3 cut(s) 354, 391, 836
Bst1107I GTATAC 2 cut(s) 40, 510
Bst2UI CCWGG 4 cut(s) 536, 704, 855, 1115
Bst4CI ACNGT 3 cut(s) 44, 295, 780
Bst6I CTCTTC 3 cut(s) 123, 810, 1206
BstAPI GCANNNNNTGC 1 cut(s) 789
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 91, 1065
BstDEI CTNAG 1 cut(s) 1068
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 9 cut(s) 24, 141, 187, 828, 943, 1063, 1083, 1291, 1321
BstFNI CGCG 1 cut(s) 989
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 2 cut(s) 574, 1258
BstKTI GATC 8 cut(s) 187, 232, 307, 313, 835, 1048, 1102, 1338
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
BstMWI GCNNNNNNNGC 2 cut(s) 789, 1069
BstNI CCWGG 4 cut(s) 536, 704, 855, 1115
BstNSI RCATGY 1 cut(s) 807
BstSCI CCNGG 5 cut(s) 211, 534, 702, 853, 1113
BstSLI GKGCMC 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 251
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 2 cut(s) 455, 1139
BstX2I RGATCY 2 cut(s) 229, 832
BstXI CCANNNNNNTGG 1 cut(s) 1150
BstYI RGATCY 2 cut(s) 229, 832
BstZ17I GTATAC 2 cut(s) 40, 510
BsuI GTATCC 1 cut(s) 793
BsuRI GGCC 4 cut(s) 93, 276, 353, 665
BtsCI GGATG 9 cut(s) 24, 141, 187, 828, 943, 1063, 1083, 1291, 1321
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 4 cut(s) 291, 809, 933, 1236
Cac8I GCNNGC 2 cut(s) 91, 1065
CaiI CAGNNNCTG 1 cut(s) 932
CciI TCATGA 2 cut(s) 307, 1346
CfoI GCGC 2 cut(s) 574, 1258
Cfr10I RCCGGY 1 cut(s) 1063
CsiI ACCWGGT 1 cut(s) 853
DdeI CTNAG 1 cut(s) 1068
DpnI GATC 8 cut(s) 186, 231, 306, 312, 834, 1047, 1101, 1337
DpnII GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
EaeI YGGCCR 3 cut(s) 274, 351, 663
Eam1104I CTCTTC 3 cut(s) 123, 810, 1206
EarI CTCTTC 3 cut(s) 123, 810, 1206
Eco105I TACGTA 1 cut(s) 251
Eco130I CCWWGG 3 cut(s) 354, 391, 836
Eco24I GRGCYC 2 cut(s) 141, 542
Eco32I GATATC 1 cut(s) 1156
Eco47III AGCGCT 1 cut(s) 573
Eco57I CTGAAG 3 cut(s) 147, 560, 874
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoRII CCWGG 4 cut(s) 534, 702, 853, 1113
EcoRV GATATC 1 cut(s) 1156
EcoT14I CCWWGG 3 cut(s) 354, 391, 836
EcoT38I GRGCYC 2 cut(s) 141, 542
ErhI CCWWGG 3 cut(s) 354, 391, 836
FalI AAGNNNNNCTT 4 cut(s) 945, 977, 1080, 1112
FaqI GGGAC 2 cut(s) 354, 1233
FauNDI CATATG 1 cut(s) 1183
FbaI TGATCA 3 cut(s) 304, 310, 1335
FblI GTMKAC 2 cut(s) 39, 509
Fnu4HI GCNGC 3 cut(s) 444, 1128, 1301
FokI GGATG 9 cut(s) 11, 128, 194, 835, 950, 1070, 1090, 1298, 1328
FriOI GRGCYC 2 cut(s) 141, 542
Fsp4HI GCNGC 3 cut(s) 444, 1128, 1301
FspBI CTAG 2 cut(s) 116, 642
GlaI GCGC 2 cut(s) 573, 1257
GluI GCNGC 3 cut(s) 444, 1128, 1301
GsaI CCCAGC 1 cut(s) 1285
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 4 cut(s) 93, 276, 353, 665
HapII CCGG 3 cut(s) 213, 638, 1064
HhaI GCGC 2 cut(s) 574, 1258
Hin6I GCGC 2 cut(s) 572, 1256
HinP1I GCGC 2 cut(s) 572, 1256
HpaII CCGG 3 cut(s) 213, 638, 1064
HphI GGTGA 1 cut(s) 1170
Hpy166II GTNNAC 6 cut(s) 40, 424, 510, 776, 828, 1106
Hpy188I TCNGA 5 cut(s) 319, 579, 723, 893, 1137
Hpy188III TCNNGA 6 cut(s) 233, 302, 308, 997, 1339, 1347
Hpy8I GTNNAC 6 cut(s) 40, 424, 510, 776, 828, 1106
HpyAV CCTTC 5 cut(s) 433, 790, 894, 898, 1177
HpyCH4III ACNGT 3 cut(s) 44, 295, 780
HpyCH4IV ACGT 2 cut(s) 250, 788
HpyCH4V TGCA 5 cut(s) 156, 677, 783, 807, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 789, 1069
HpyF3I CTNAG 1 cut(s) 1068
HpySE526I ACGT 2 cut(s) 250, 788
HspAI GCGC 2 cut(s) 572, 1256
KroI GCCGGC 1 cut(s) 1063
KroNI GCCGGC 1 cut(s) 1065
Ksp22I TGATCA 3 cut(s) 304, 310, 1335
Kzo9I GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
LmnI GCTCC 2 cut(s) 640, 1117
Lsp1109I GCAGC 2 cut(s) 455, 1139
LweI GCATC 1 cut(s) 611
MabI ACCWGGT 1 cut(s) 853
MaeI CTAG 2 cut(s) 116, 642
MaeII ACGT 2 cut(s) 250, 788
MaeIII GTNAC 2 cut(s) 191, 1325
MalI GATC 8 cut(s) 186, 231, 306, 312, 834, 1047, 1101, 1337
MbiI CCGCTC 3 cut(s) 635, 880, 1300
MboI GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
MboII GAAGA 4 cut(s) 140, 275, 827, 1223
MflI RGATCY 2 cut(s) 229, 832
MhlI GDGCHC 4 cut(s) 58, 141, 208, 542
MlsI TGGCCA 1 cut(s) 353
MluCI AATT 6 cut(s) 162, 404, 485, 590, 597, 688
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 6 cut(s) 41, 336, 556, 837, 1255, 1328
Mox20I TGGCCA 1 cut(s) 353
MroNI GCCGGC 1 cut(s) 1063
MroXI GAANNNNTTC 1 cut(s) 887
MscI TGGCCA 1 cut(s) 353
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 3 cut(s) 213, 638, 1064
MspR9I CCNGG 5 cut(s) 213, 536, 704, 855, 1115
MvaI CCWGG 4 cut(s) 536, 704, 855, 1115
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 2 cut(s) 789, 1069
NaeI GCCGGC 1 cut(s) 1065
NciI CCSGG 1 cut(s) 213
NdeI CATATG 1 cut(s) 1183
NdeII GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
NgoMIV GCCGGC 1 cut(s) 1063
NlaIV GGNNCC 2 cut(s) 207, 231
NmeAIII GCCGAG 1 cut(s) 302
NspI RCATGY 1 cut(s) 807
PagI TCATGA 2 cut(s) 307, 1346
PasI CCCWGGG 1 cut(s) 535
PdiI GCCGGC 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 887
PfeI GAWTC 4 cut(s) 19, 658, 1010, 1091
PfoI TCCNGGA 2 cut(s) 211, 702
PkrI GCNGC 3 cut(s) 445, 1129, 1302
PleI GAGTC 6 cut(s) 40, 336, 556, 837, 1254, 1327
PpsI GAGTC 6 cut(s) 40, 336, 556, 837, 1254, 1327
Ppu21I YACGTR 1 cut(s) 251
Psp6I CCWGG 4 cut(s) 534, 702, 853, 1113
PspFI CCCAGC 1 cut(s) 1281
PspGI CCWGG 4 cut(s) 534, 702, 853, 1113
PspN4I GGNNCC 2 cut(s) 207, 231
PstNI CAGNNNCTG 1 cut(s) 932
PsuI RGATCY 2 cut(s) 229, 832
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 3 cut(s) 444, 1128, 1301
Sau3AI GATC 8 cut(s) 184, 229, 304, 310, 832, 1045, 1099, 1335
SchI GAGTC 6 cut(s) 41, 336, 556, 837, 1255, 1328
ScrFI CCNGG 5 cut(s) 213, 536, 704, 855, 1115
SduI GDGCHC 4 cut(s) 58, 141, 208, 542
SexAI ACCWGGT 1 cut(s) 853
SfaNI GCATC 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
SnaBI TACGTA 1 cut(s) 251
Sse9I AATT 6 cut(s) 162, 404, 485, 590, 597, 688
SsiI CCGC 5 cut(s) 123, 633, 740, 880, 1300
SspMI CTAG 2 cut(s) 116, 642
StyD4I CCNGG 5 cut(s) 211, 534, 702, 853, 1113
StyI CCWWGG 3 cut(s) 354, 391, 836
TaaI ACNGT 3 cut(s) 44, 295, 780
TaiI ACGT 2 cut(s) 253, 791
TaqI TCGA 1 cut(s) 1048
TasI AATT 6 cut(s) 162, 404, 485, 590, 597, 688
TauI GCSGC 1 cut(s) 1303
TfiI GAWTC 4 cut(s) 19, 658, 1010, 1091
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 4 cut(s) 298, 816, 933, 1243
TseI GCWGC 2 cut(s) 443, 1127
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 2 cut(s) 179, 1223
TspRI CASTG 4 cut(s) 298, 816, 933, 1243
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 404
XceI RCATGY 1 cut(s) 807
XmiI GTMKAC 2 cut(s) 39, 509
XmnI GAANNNNTTC 1 cut(s) 887
XspI CTAG 2 cut(s) 116, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.