Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009836

Physical Location & Seq

Genomic Coordinates Reverse (-)

21046768 .. 21050082

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTCAATCTTCTGTGGGATTCCCATCCTTGAGTCTGTATACTGTCTGGCATGTGCTCGTTGGGTGTGGTTGAAATGCCTTTACACGGCAGGCCGTGAGAGTGAGAACTGGGGTCTAGCCACCGCTGAAGAGTTTGAGCCCATCCCTCGCTATTGCAAACTAATTTTATCTGTCTATGAGAATGATCTCCGTAACCCAATGTGGGCACCTCCCGGAGGGTATGGTATGGATCCTGATTGGGTAATCTTACGCAAAGGCTATGAAGAAACACATGGCCGAGTTCCACCTTACATTGTCTATCTTGATCATGATCATTCTGATATAGTCTTGGTACTTAGGGGACTCAATATGGCCAAGGAAAGTGATTATTTAGTTATGCTTGATAACAACCTTGGGAAGACAAAATTTGATGGTGGGTATGTCCACAATGGGTTATTGAAGGCAGCAGAGTGGCTGTTTGATACAGAGTATGAGTTTTTGAGGGAATTGGTATTAAAAAATCCAAAGTATACCCTGACATTTATTGGACATTCCCTGGGCTCTGGTGTGGTGGCATTGCTGACTCTGGTAGCGCTTCAGAACAGAAGCAAATTGGGAATTGTTGAGAGGAAAAAGATTAGATGCTATGCCACCGCTCCGGCTAGATGTATGTCATTGAATCTGGCCGTGAGATATGCAGATGTTATCAATTCTATTGTACTCCAGGACGATTTCTTACCTCGGACAACAACTTCTTTAGCGGATTTATTCAAATCACTTTTCTGTTTGCCATGTTTACTGTGCATAACATGCTTGAAGGATACATGCACACTGGAAGAGAGGATGTTCACAGATCCAAGGAGACTCTATGCACCTGGTCGGCTCTATCACATTGTTGAGCGGAAGCCCTTCAGCCAACAATTGGAAGTCAACTGGTTGCAGATTAGGAAGGTTTCCCCCAGTTGTGAGAACAGCAGTGCCTGTGGATGGGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

325

Amino Acids

37.13

Weight (kDa)

6.6

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	10 - 74	1.2e-20	Lipase 3 N-terminal region
Lipase_3	PF01764	109 - 244	3.9e-23	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009836)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00500 AT4G00500
fragaria_vesca	FvH4_7g14200 FvH4_7g14200 FvH4_7g14200
malus_domestica	MD01G1059200.v1.1
prunus_persica	Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1 Prupe.2G169800_v2.0.a1
pyrus_communis	pycom01g08820
rosa_chinensis	RchiOBHm_Chr1g0355131
rosa_laevigata	RLG00000028175
rosa_multiflora	Rmu_sc0003115.1_g000035 Rmu_sc0004488.1_g000007
rosa_roxburghii	Rroxscaffold_4G00300650
rosa_rugosa	Rorug01G0245300
rosa_samantha	Rh1AG257600 Rh1BG227100 Rh1CG241200 Rh1DG254800
rosa_wichuraiana	Rw1G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	901
AccBSI	CCGCTC	2 cut(s)	635, 880
AccI	GTMKAC	2 cut(s)	39, 509
AciI	CCGC	4 cut(s)	123, 633, 740, 880
AclWI	GGATC	3 cut(s)	224, 237, 827
AcoI	YGGCCR	3 cut(s)	274, 351, 663
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	3 cut(s)	147, 560, 874
AfaI	GTAC	2 cut(s)	333, 699
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	5 cut(s)	85, 202, 215, 901, 966
AgsI	TTSAA	5 cut(s)	73, 439, 658, 751, 796
AjnI	CCWGG	3 cut(s)	534, 702, 853
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	3 cut(s)	224, 237, 827
AlwNI	CAGNNNCTG	1 cut(s)	960
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	4 cut(s)	91, 274, 351, 663
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	887
AspLEI	GCGC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	2 cut(s)	141, 542
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	4 cut(s)	32, 149, 404, 960
BceAI	ACGGC	3 cut(s)	78, 102, 650
BciT130I	CCWGG	3 cut(s)	536, 704, 855
BciVI	GTATCC	1 cut(s)	793
BclI	TGATCA	2 cut(s)	304, 310
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	835
BfaI	CTAG	2 cut(s)	116, 642
BfoI	RGCGCY	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	4 cut(s)	213, 536, 704, 855
BmiI	GGNNCC	2 cut(s)	207, 231
BmrFI	CCNGG	4 cut(s)	213, 536, 704, 855
BmrI	ACTGGG	2 cut(s)	118, 933
BmsI	GCATC	1 cut(s)	611
BmuI	ACTGGG	2 cut(s)	118, 933
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	686
BpuEI	CTTGAG	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	213
BsaBI	GATNNNNATC	2 cut(s)	23, 309
BsaJI	CCNNGG	6 cut(s)	354, 391, 534, 535, 719, 836
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 202, 215, 901, 966
Bse1I	ACTGG	4 cut(s)	113, 816, 917, 939
Bse3DI	GCAATG	1 cut(s)	554
Bse8I	GATNNNNATC	2 cut(s)	23, 309
BseBI	CCWGG	3 cut(s)	536, 704, 855
BseDI	CCNNGG	6 cut(s)	354, 391, 534, 535, 719, 836
BseGI	GGATG	4 cut(s)	24, 141, 828, 971
BseJI	GATNNNNATC	2 cut(s)	23, 309
BseLI	CCNNNNNNNGG	5 cut(s)	85, 202, 215, 901, 966
BseMI	GCAATG	1 cut(s)	554
BseNI	ACTGG	4 cut(s)	113, 816, 917, 939
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	4 cut(s)	93, 276, 353, 665
BshNI	GGYRCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	213, 638
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	5 cut(s)	85, 202, 215, 901, 966
BsmAI	GTCTC	1 cut(s)	835
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	4 cut(s)	93, 276, 353, 665
Bsp1286I	GDGCHC	4 cut(s)	58, 141, 208, 542
Bsp143I	GATC	5 cut(s)	184, 229, 304, 310, 832
BspACI	CCGC	4 cut(s)	123, 633, 740, 880
BspANI	GGCC	4 cut(s)	93, 276, 353, 665
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	207, 231
BspPI	GGATC	3 cut(s)	224, 237, 827
BspT107I	GGYRCC	1 cut(s)	205
BsrBI	CCGCTC	2 cut(s)	635, 880
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	4 cut(s)	113, 816, 917, 939
BssECI	CCNNGG	6 cut(s)	354, 391, 534, 535, 719, 836
BssMI	GATC	5 cut(s)	184, 229, 304, 310, 832
BssNAI	GTATAC	2 cut(s)	40, 510
BssT1I	CCWWGG	3 cut(s)	354, 391, 836
Bst1107I	GTATAC	2 cut(s)	40, 510
Bst2UI	CCWGG	3 cut(s)	536, 704, 855
Bst4CI	ACNGT	2 cut(s)	44, 780
Bst6I	CTCTTC	2 cut(s)	123, 810
BstAPI	GCANNNNNTGC	1 cut(s)	789
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	1 cut(s)	335
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstF5I	GGATG	4 cut(s)	24, 141, 828, 971
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	5 cut(s)	187, 232, 307, 313, 835
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	5 cut(s)	184, 229, 304, 310, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	789
BstNI	CCWGG	3 cut(s)	536, 704, 855
BstNSI	RCATGY	3 cut(s)	54, 792, 807
BstSCI	CCNGG	4 cut(s)	211, 534, 702, 853
BstSLI	GKGCMC	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	229, 832
BstYI	RGATCY	2 cut(s)	229, 832
BstZ17I	GTATAC	2 cut(s)	40, 510
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	4 cut(s)	93, 276, 353, 665
BtsCI	GGATG	4 cut(s)	24, 141, 828, 971
BtsI	GCAGTG	1 cut(s)	961
BtsIMutI	CAGTG	2 cut(s)	809, 961
Cac8I	GCNNGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	960
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	574
CsiI	ACCWGGT	1 cut(s)	853
Csp6I	GTAC	2 cut(s)	332, 698
CviAII	CATG	6 cut(s)	51, 272, 308, 771, 789, 804
CviQI	GTAC	2 cut(s)	332, 698
DdeI	CTNAG	1 cut(s)	335
DpnI	GATC	5 cut(s)	186, 231, 306, 312, 834
DpnII	GATC	5 cut(s)	184, 229, 304, 310, 832
EaeI	YGGCCR	3 cut(s)	274, 351, 663
Eam1104I	CTCTTC	2 cut(s)	123, 810
EarI	CTCTTC	2 cut(s)	123, 810
Eco130I	CCWWGG	3 cut(s)	354, 391, 836
Eco24I	GRGCYC	2 cut(s)	141, 542
Eco47III	AGCGCT	1 cut(s)	573
Eco57I	CTGAAG	3 cut(s)	147, 560, 874
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoRII	CCWGG	3 cut(s)	534, 702, 853
EcoT14I	CCWWGG	3 cut(s)	354, 391, 836
EcoT38I	GRGCYC	2 cut(s)	141, 542
ErhI	CCWWGG	3 cut(s)	354, 391, 836
FaeI	CATG	6 cut(s)	54, 275, 311, 774, 792, 807
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	6 cut(s)	50, 271, 307, 770, 788, 803
FbaI	TGATCA	2 cut(s)	304, 310
FblI	GTMKAC	2 cut(s)	39, 509
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	3 cut(s)	11, 128, 835
FriOI	GRGCYC	2 cut(s)	141, 542
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	2 cut(s)	116, 642
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	686
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	4 cut(s)	93, 276, 353, 665
HapII	CCGG	2 cut(s)	213, 638
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	6 cut(s)	54, 275, 311, 774, 792, 807
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	6 cut(s)	19, 32, 342, 562, 658, 843
HpaII	CCGG	2 cut(s)	213, 638
Hpy166II	GTNNAC	6 cut(s)	40, 424, 510, 776, 828, 910
Hpy188I	TCNGA	3 cut(s)	319, 579, 723
Hpy188III	TCNNGA	3 cut(s)	233, 302, 308
Hpy8I	GTNNAC	6 cut(s)	40, 424, 510, 776, 828, 910
HpyAV	CCTTC	4 cut(s)	433, 790, 898, 922
HpyCH4III	ACNGT	2 cut(s)	44, 780
HpyCH4V	TGCA	6 cut(s)	156, 677, 783, 807, 851, 919
HpyF10VI	GCNNNNNNNGC	1 cut(s)	789
HpyF3I	CTNAG	1 cut(s)	335
Hsp92II	CATG	6 cut(s)	54, 275, 311, 774, 792, 807
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	2 cut(s)	304, 310
Kzo9I	GATC	5 cut(s)	184, 229, 304, 310, 832
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	611
MabI	ACCWGGT	1 cut(s)	853
MaeI	CTAG	2 cut(s)	116, 642
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	5 cut(s)	186, 231, 306, 312, 834
MbiI	CCGCTC	2 cut(s)	635, 880
MboI	GATC	5 cut(s)	184, 229, 304, 310, 832
MboII	GAAGA	4 cut(s)	140, 275, 409, 827
MfeI	CAATTG	1 cut(s)	899
MflI	RGATCY	2 cut(s)	229, 832
MhlI	GDGCHC	4 cut(s)	58, 141, 208, 542
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	7 cut(s)	162, 404, 485, 590, 597, 688, 899
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	4 cut(s)	41, 336, 556, 837
MnlI	CCTC	8 cut(s)	156, 209, 219, 474, 600, 729, 813, 964
Mox20I	TGGCCA	1 cut(s)	353
MroXI	GAANNNNTTC	1 cut(s)	887
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	494
Msp20I	TGGCCA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	213, 638
MspR9I	CCNGG	4 cut(s)	213, 536, 704, 855
MunI	CAATTG	1 cut(s)	899
MvaI	CCWGG	3 cut(s)	536, 704, 855
MwoI	GCNNNNNNNGC	1 cut(s)	789
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	5 cut(s)	184, 229, 304, 310, 832
NlaIII	CATG	6 cut(s)	54, 275, 311, 774, 792, 807
NlaIV	GGNNCC	2 cut(s)	207, 231
NmeAIII	GCCGAG	1 cut(s)	302
NspI	RCATGY	3 cut(s)	54, 792, 807
PagI	TCATGA	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	887
PfeI	GAWTC	2 cut(s)	19, 658
PflMI	CCANNNNNTGG	1 cut(s)	901
PfoI	TCCNGGA	2 cut(s)	211, 702
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	4 cut(s)	40, 336, 556, 837
PpsI	GAGTC	4 cut(s)	40, 336, 556, 837
Psp6I	CCWGG	3 cut(s)	534, 702, 853
PspGI	CCWGG	3 cut(s)	534, 702, 853
PspN4I	GGNNCC	2 cut(s)	207, 231
PstNI	CAGNNNCTG	1 cut(s)	960
PsuI	RGATCY	2 cut(s)	229, 832
RsaI	GTAC	2 cut(s)	333, 699
RsaNI	GTAC	2 cut(s)	332, 698
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	5 cut(s)	184, 229, 304, 310, 832
SchI	GAGTC	4 cut(s)	41, 336, 556, 837
ScrFI	CCNGG	4 cut(s)	213, 536, 704, 855
SduI	GDGCHC	4 cut(s)	58, 141, 208, 542
SetI	ASST	7 cut(s)	211, 289, 393, 721, 856, 933, 975
SexAI	ACCWGGT	1 cut(s)	853
SfaNI	GCATC	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	7 cut(s)	162, 404, 485, 590, 597, 688, 899
SsiI	CCGC	4 cut(s)	123, 633, 740, 880
SspMI	CTAG	2 cut(s)	116, 642
StyD4I	CCNGG	4 cut(s)	211, 534, 702, 853
StyI	CCWWGG	3 cut(s)	354, 391, 836
TaaI	ACNGT	2 cut(s)	44, 780
TasI	AATT	7 cut(s)	162, 404, 485, 590, 597, 688, 899
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	2 cut(s)	19, 658
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	2 cut(s)	816, 961
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	816, 961
Van91I	CCANNNNNTGG	1 cut(s)	901
XagI	CCTNNNNNAGG	1 cut(s)	213
XapI	RAATTY	1 cut(s)	404
XceI	RCATGY	3 cut(s)	54, 792, 807
XmiI	GTMKAC	2 cut(s)	39, 509
XmnI	GAANNNNTTC	1 cut(s)	887
XspI	CTAG	2 cut(s)	116, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.