Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016919

Physical Location & Seq

Genomic Coordinates Forward (+)

13401573 .. 13402789

Gene Structure 1217 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCCCTGTTTTTGTCTTCAACAGCAAAAATCTTTAGTTTTCTGTATATGAAAGTGTCAGAGTTATTGGGCAATGCCAAGAACTATATTGTGAACAAGGCCAGGGGTTATGTTTTGGCGAGGTTGGTTGAGATGCAAAGGAGGTCTGCGTTTATTGTAGGCCTTCAACTAGAGGATATGAGCTTCGACTCCATGGATCTCCTTTTCAAGATCTCAGTGTTCAACTCGTTTCTGTTTTCTCTGCCTGTCAGTCAAGCCTCTCTCAAAATGAAAATCAGTGGCAGTGAACCTATATCAGGGAAATTGAAGGAGCCAGTGTATATGAAGGCAGGAGCAGAGTCTATATTGTCTGTGTTAGCAAAGGTGCCATATAGTATGCCTATAAATTTGGCAAATGACATTTCTGTAGATAAAAACATCGACTACCGCATCGATCTCCAACTCACAATTCACCTTCCTATCATTGGTAACATCTCTCTACCACTTCCTTGCCAACAAGGAGAGGCCAAAATCTCCGAGTTGTTTAGCAAATTGATGGATCAAATCATGTTGAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

187

Amino Acids

20.81

Weight (kDa)

8.92

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	71 - 165	2.6e-09	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15470
malus_domestica	MD01G1072000.v1.1
prunus_persica	Prupe.2G178300_v2.0.a1
pyrus_communis	pycom01g10120
rosa_chinensis	RchiOBHm_Chr1g0357781
rosa_laevigata	RLG00000027997
rosa_multiflora	Rmu_sc0011109.1_g000014
rosa_roxburghii	Rroxscaffold_4G00298520
rosa_rugosa	Rorug01G0258600
rosa_samantha	Rh1AG272500 Rh1BG239700 Rh1CG256400 Rh1DG268000
rosa_wichuraiana	Rw1G024320

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	204, 546
AcsI	RAATTY	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	296, 464
AgsI	TTSAA	5 cut(s)	21, 167, 208, 223, 307
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
AlwI	GGATC	2 cut(s)	204, 546
AoxI	GGCC	3 cut(s)	99, 160, 504
ApoI	RAATTY	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	9
BccI	CCATC	1 cut(s)	529
BciT130I	CCWGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	405
BglII	AGATCT	1 cut(s)	210
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	312, 366
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	123, 438
BpiI	GAAGAC	1 cut(s)	9
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	102, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 464
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	102, 192
BseLI	CCNNNNNNNGG	2 cut(s)	296, 464
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	314
BshFI	GGCC	3 cut(s)	101, 162, 506
BshNI	GGYRCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	296, 464
BsnI	GGCC	3 cut(s)	101, 162, 506
Bsp143I	GATC	4 cut(s)	196, 210, 433, 538
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	3 cut(s)	101, 162, 506
BspCNI	CTCAG	1 cut(s)	227
BspDI	ATCGAT	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	312, 366
BspPI	GGATC	2 cut(s)	204, 546
BspT107I	GGYRCC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	102, 192
BssMI	GATC	4 cut(s)	196, 210, 433, 538
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	214
BstDSI	CCRYGG	1 cut(s)	192
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstKTI	GATC	4 cut(s)	199, 213, 436, 541
BstMBI	GATC	4 cut(s)	196, 210, 433, 538
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	405
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	2 cut(s)	196, 210
BstYI	RGATCY	2 cut(s)	196, 210
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	101, 162, 506
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	4 cut(s)	222, 283, 289, 321
ClaI	ATCGAT	1 cut(s)	432
CviAII	CATG	2 cut(s)	193, 547
CviJI	RGCY	6 cut(s)	101, 162, 183, 257, 313, 506
CviKI_1	RGCY	6 cut(s)	101, 162, 183, 257, 313, 506
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	4 cut(s)	198, 212, 435, 540
DpnII	GATC	4 cut(s)	196, 210, 433, 538
Eco130I	CCWWGG	1 cut(s)	192
Eco147I	AGGCCT	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	196, 550
FatI	CATG	2 cut(s)	192, 546
FspBI	CTAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	101, 162, 506
Hin1II	CATG	2 cut(s)	196, 550
HinfI	GANTC	2 cut(s)	188, 338
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	94, 287
Hpy188I	TCNGA	2 cut(s)	61, 517
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	2 cut(s)	94, 287
HpyAV	CCTTC	4 cut(s)	173, 301, 319, 464
HpyCH4V	TGCA	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	214
Hsp92II	CATG	2 cut(s)	196, 550
Kzo9I	GATC	4 cut(s)	196, 210, 433, 538
LmnI	GCTCC	2 cut(s)	310, 332
LpnPI	CCDG	7 cut(s)	20, 88, 115, 258, 282, 315, 327
LweI	GCATC	2 cut(s)	123, 438
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	4 cut(s)	198, 212, 435, 540
MboI	GATC	4 cut(s)	196, 210, 433, 538
MboII	GAAGA	1 cut(s)	9
MflI	RGATCY	2 cut(s)	196, 210
MluCI	AATT	4 cut(s)	302, 385, 447, 530
MlyI	GAGTC	2 cut(s)	182, 347
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	5 cut(s)	114, 135, 166, 268, 496
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	4 cut(s)	196, 210, 433, 538
NlaIII	CATG	2 cut(s)	196, 550
NlaIV	GGNNCC	2 cut(s)	312, 366
PceI	AGGCCT	1 cut(s)	162
PleI	GAGTC	2 cut(s)	182, 346
PpsI	GAGTC	2 cut(s)	182, 346
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	312, 366
PsuI	RGATCY	2 cut(s)	196, 210
Sau3AI	GATC	4 cut(s)	196, 210, 433, 538
SchI	GAGTC	2 cut(s)	182, 347
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	6 cut(s)	125, 146, 185, 292, 366, 456
SfaNI	GCATC	2 cut(s)	123, 438
SfcI	CTRYAG	1 cut(s)	405
Sse9I	AATT	4 cut(s)	302, 385, 447, 530
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	192
TaqI	TCGA	3 cut(s)	186, 420, 432
TasI	AATT	4 cut(s)	302, 385, 447, 530
TscAI	CASTG	4 cut(s)	222, 283, 289, 321
TspDTI	ATGAA	3 cut(s)	65, 284, 338
TspRI	CASTG	4 cut(s)	222, 283, 289, 321
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	385
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.