Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016919

Physical Location & Seq

Genomic Coordinates Forward (+)

22272929 .. 22274243

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCAAGAAAAGGATCATGGTTGGCCATATATACATCAACCTAAGCTCTCCTTGTCCACGGGGAGCATAACAAATAAGCTCAAAGTTAATTACAAATTTACAAATATCTCTTCCTCTTCAATAGTGATGCAAAGAAGTGCAACTTTTGTTTCTTCTGCGTTTTCGAATACGTTTTGGAAAGTGTCACAGTTAGCGGGCAATGCCAAAAACTATGTAGTGAACCTGGCCAAGGGCTTTTTGGAACGGAGATTGTCTGAGATGAAGAAAAGATCTGCGTTTATTGTGGGCCTTCAATTTGAAAACCTAAACTTCGACTCCATAGAACTCGTTTTCAAGATCTCCGTGTACAACCCCTTCGAGTTTTATCTTCCCGTCAGTCGGGCCACTTTCAAATTAGAAAGCGGCGGCAGCGAGGCTTTATCAGCGACGTTGAAAGAGCCTGCGTCACTGAAGCCGGGAGAAGAGTCCATTTTGTTGGTGTTGGCGAAGGTGCCATTCAGTATGCTCATGACCTTGGCAAAGGACATTTCTGAAGATGCAGATATTGACTATGAGATCGATTTCAACATCCAAATTAAGCTTCCTATCATTGGGGTCGTTTCCTTGCCAATACCTTGCCAACAACAGGGCCAGCTCAAGATTTCTGATCTGTTTACCAATTTGTTGGAGGAAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

227

Amino Acids

25.33

Weight (kDa)

6.75

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15470
malus_domestica	MD01G1072000.v1.1
prunus_persica	Prupe.2G178300_v2.0.a1
pyrus_communis	pycom01g10120
rosa_chinensis	RchiOBHm_Chr1g0357781
rosa_laevigata	RLG00000027997
rosa_multiflora	Rmu_sc0011109.1_g000014
rosa_roxburghii	Rroxscaffold_4G00298520
rosa_rugosa	Rorug01G0258600
rosa_samantha	Rh1AG272500 Rh1BG239700 Rh1CG256400 Rh1DG268000
rosa_wichuraiana	Rw1G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	490
AciI	CCGC	3 cut(s)	194, 402, 405
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	23, 225
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	2 cut(s)	470, 552
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	4 cut(s)	229, 378, 590, 625
AgsI	TTSAA	7 cut(s)	120, 293, 299, 334, 391, 433, 565
AjnI	CCWGG	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AluBI	AGCT	4 cut(s)	46, 79, 580, 634
AluI	AGCT	4 cut(s)	46, 79, 580, 634
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	5 cut(s)	23, 225, 286, 381, 628
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	95
AseI	ATTAAT	1 cut(s)	675
AspS9I	GGNCC	3 cut(s)	286, 381, 628
AsuC2I	CCSGG	1 cut(s)	456
AsuII	TTCGAA	1 cut(s)	164
BalI	TGGCCA	2 cut(s)	25, 227
BanI	GGYRCC	1 cut(s)	490
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbvI	GCAGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	456
BglII	AGATCT	2 cut(s)	269, 336
BisI	GCNGC	3 cut(s)	403, 406, 409
BlsI	GCNGC	3 cut(s)	404, 407, 410
Bme1390I	CCNGG	2 cut(s)	224, 456
BmgT120I	GGNCC	3 cut(s)	286, 381, 628
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	224, 456
BmsI	GCATC	2 cut(s)	117, 526
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	456
Bsa29I	ATCGAT	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	57, 228, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 378, 590, 625
Bse3DI	GCAATG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	57, 228, 513
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	4 cut(s)	229, 378, 590, 625
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	420
BshFI	GGCC	5 cut(s)	25, 227, 288, 383, 630
BshNI	GGYRCC	1 cut(s)	490
BshVI	ATCGAT	1 cut(s)	558
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	4 cut(s)	229, 378, 590, 625
BsnI	GGCC	5 cut(s)	25, 227, 288, 383, 630
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	13, 269, 336, 555, 646
BspACI	CCGC	3 cut(s)	194, 402, 405
BspANI	GGCC	5 cut(s)	25, 227, 288, 383, 630
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	558
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	492
BspPI	GGATC	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	57, 228, 513
BssMI	GATC	5 cut(s)	13, 269, 336, 555, 646
BssT1I	CCWWGG	2 cut(s)	228, 513
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	189
Bst6I	CTCTTC	3 cut(s)	115, 121, 456
BstAUI	TGTACA	1 cut(s)	345
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	196, 441, 632
BstDEI	CTNAG	2 cut(s)	42, 255
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	567
BstKTI	GATC	5 cut(s)	16, 272, 339, 558, 649
BstMBI	GATC	5 cut(s)	13, 269, 336, 555, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 408, 422
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	222, 454
BstV1I	GCAGC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	269, 336
BstXI	CCANNNNNNTGG	2 cut(s)	475, 664
BstYI	RGATCY	2 cut(s)	269, 336
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	5 cut(s)	25, 227, 288, 383, 630
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	196, 441, 632
CciI	TCATGA	1 cut(s)	507
Cfr13I	GGNCC	3 cut(s)	286, 381, 628
ClaI	ATCGAT	1 cut(s)	558
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	2 cut(s)	17, 508
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	2 cut(s)	42, 255
DpnI	GATC	5 cut(s)	15, 271, 338, 557, 648
DpnII	GATC	5 cut(s)	13, 269, 336, 555, 646
EaeI	YGGCCR	2 cut(s)	23, 225
Eam1104I	CTCTTC	3 cut(s)	115, 121, 456
EarI	CTCTTC	3 cut(s)	115, 121, 456
Eco130I	CCWWGG	2 cut(s)	228, 513
Eco57I	CTGAAG	2 cut(s)	470, 552
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	2 cut(s)	228, 513
ErhI	CCWWGG	2 cut(s)	228, 513
FaeI	CATG	2 cut(s)	20, 511
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 127, 159
FatI	CATG	2 cut(s)	16, 507
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	3 cut(s)	403, 406, 409
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	3 cut(s)	403, 406, 409
GluI	GCNGC	3 cut(s)	403, 406, 409
HaeIII	GGCC	5 cut(s)	25, 227, 288, 383, 630
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	20, 511
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	314, 464
HpaII	CCGG	1 cut(s)	455
Hpy166II	GTNNAC	4 cut(s)	57, 220, 346, 654
Hpy188I	TCNGA	3 cut(s)	256, 532, 646
Hpy188III	TCNNGA	3 cut(s)	334, 508, 637
Hpy8I	GTNNAC	4 cut(s)	57, 220, 346, 654
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	3 cut(s)	299, 364, 481
HpyCH4III	ACNGT	1 cut(s)	189
HpyCH4IV	ACGT	2 cut(s)	170, 428
HpyCH4V	TGCA	4 cut(s)	4, 130, 140, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 408, 422
HpyF3I	CTNAG	2 cut(s)	42, 255
HpySE526I	ACGT	2 cut(s)	170, 428
Hsp92II	CATG	2 cut(s)	20, 511
Kzo9I	GATC	5 cut(s)	13, 269, 336, 555, 646
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	209, 236, 453, 468, 611, 644
Lsp1109I	GCAGC	1 cut(s)	420
LweI	GCATC	2 cut(s)	117, 526
MaeII	ACGT	2 cut(s)	170, 428
MaeIII	GTNAC	2 cut(s)	183, 444
MalI	GATC	5 cut(s)	15, 271, 338, 557, 648
MboI	GATC	5 cut(s)	13, 269, 336, 555, 646
MboII	GAAGA	7 cut(s)	102, 108, 144, 274, 359, 473, 545
MflI	RGATCY	2 cut(s)	269, 336
MlsI	TGGCCA	2 cut(s)	25, 227
MluCI	AATT	8 cut(s)	88, 95, 293, 392, 573, 658, 672, 676
MluNI	TGGCCA	2 cut(s)	25, 227
MlyI	GAGTC	2 cut(s)	308, 473
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	3 cut(s)	124, 406, 661
Mox20I	TGGCCA	2 cut(s)	25, 227
MscI	TGGCCA	2 cut(s)	25, 227
MseI	TTAA	4 cut(s)	87, 576, 675, 679
Msp20I	TGGCCA	2 cut(s)	25, 227
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	2 cut(s)	224, 456
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	200, 408, 422
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	5 cut(s)	13, 269, 336, 555, 646
NlaIII	CATG	2 cut(s)	20, 511
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	2 cut(s)	183, 444
NspV	TTCGAA	1 cut(s)	164
PacI	TTAATTAA	1 cut(s)	679
PagI	TCATGA	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	404, 407, 410
PleI	GAGTC	2 cut(s)	308, 472
PpsI	GAGTC	2 cut(s)	308, 472
PshBI	ATTAAT	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	3 cut(s)	286, 381, 628
PsuI	RGATCY	2 cut(s)	269, 336
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SaqAI	TTAA	4 cut(s)	87, 576, 675, 679
SatI	GCNGC	3 cut(s)	403, 406, 409
Sau3AI	GATC	5 cut(s)	13, 269, 336, 555, 646
Sau96I	GGNCC	3 cut(s)	286, 381, 628
SchI	GAGTC	2 cut(s)	308, 473
ScrFI	CCNGG	2 cut(s)	224, 456
SfaNI	GCATC	2 cut(s)	117, 526
SfuI	TTCGAA	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	8 cut(s)	88, 95, 293, 392, 573, 658, 672, 676
SsiI	CCGC	3 cut(s)	194, 402, 405
StyD4I	CCNGG	2 cut(s)	222, 454
StyI	CCWWGG	2 cut(s)	228, 513
TaaI	ACNGT	1 cut(s)	189
TaiI	ACGT	2 cut(s)	173, 431
TaqI	TCGA	4 cut(s)	164, 312, 357, 558
TasI	AATT	8 cut(s)	88, 95, 293, 392, 573, 658, 672, 676
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	2 cut(s)	405, 408
Tru1I	TTAA	4 cut(s)	87, 576, 675, 679
Tru9I	TTAA	4 cut(s)	87, 576, 675, 679
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	2 cut(s)	183, 444
TseI	GCWGC	1 cut(s)	408
Tsp45I	GTSAC	2 cut(s)	183, 444
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	259, 331
TspRI	CASTG	1 cut(s)	453
VspI	ATTAAT	1 cut(s)	675
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.