Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016919

Physical Location & Seq

Genomic Coordinates Forward (+)

36790130 .. 36790873

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGAGGACTAAAGATGATGCCCACGGGAAGATCAGTCTCCTTCAAAATGAGTGGGATAGAGTTTATTATCAAGTAGATACAGTCCCAGTTACCAACAAAGGTTCAGAGATGGAGCTGGTGATTGTTTTAACTATCTTCACCTCCTTTGACTTCTCGTGCAACAAGTTCAACGGATCAATACCCGAGGAAATTGGAGAACTCAAATCATTGTATGCCCTCAACTTGTCCAACAATGCTTTCACGGGTGCAGTTCCATCATCACTGAGTAATTTGAGTCAGCTAGAGTCCTTGGACCTCTCAAAAAACAAACTGAGCGGTCAAATCCCACCAGAGCTTACAAAACTCACTTTCCTTGCATTCTTGAATCTCTCATATAATCAATTGGTTGGGAGGATACCAAGCGGTGCTCAATTTTCAACATTTGATGCAGCTTCTTTCAAAGGTAATAAAGGATTATGGGGGCCTCCTTTAACAGCAGATAATAGAACAGGGTTCTCACCAAAGTTGGAAGGAAACCATTCAAATCCTGGACATGAGATTGATTGGGATATTATCTTCGCTGAAATTGGATTTACATGTGGGTTTGGGATTGTCATCGGGTCACTTTTGTTTTGCAAGAGATGGAGGAAATGGTATTACAGTGCTATGTATAACATGCTTCTGAAGATATTCCCTCAGTTGGAACAAAGATTTGGTCATCACAGGAGACATGTTTACGTACATCAAAGATACTGGAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

247

Amino Acids

28.15

Weight (kDa)

8.9

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	59 - 123	1.7e-06	Leucine-rich repeat region
LRR_8	PF13855	69 - 128	6.8e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15470
malus_domestica	MD01G1072000.v1.1
prunus_persica	Prupe.2G178300_v2.0.a1
pyrus_communis	pycom01g10120
rosa_chinensis	RchiOBHm_Chr1g0357781
rosa_laevigata	RLG00000027997
rosa_multiflora	Rmu_sc0011109.1_g000014
rosa_roxburghii	Rroxscaffold_4G00298520
rosa_rugosa	Rorug01G0258600
rosa_samantha	Rh1AG272500 Rh1BG239700 Rh1CG256400 Rh1DG268000
rosa_wichuraiana	Rw1G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	315
AciI	CCGC	2 cut(s)	315, 402
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	1 cut(s)	679
AflIII	ACRYGT	2 cut(s)	575, 709
AgsI	TTSAA	6 cut(s)	44, 169, 364, 417, 439, 522
AjnI	CCWGG	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 253, 675, 707
AluBI	AGCT	4 cut(s)	115, 280, 334, 431
AluI	AGCT	4 cut(s)	115, 280, 334, 431
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	3 cut(s)	41, 700, 730
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	428
ArsI	GACNNNNNNTTYG	2 cut(s)	679, 711
Asp700I	GAANNNNTTC	2 cut(s)	517, 668
AspS9I	GGNCC	2 cut(s)	292, 461
AsuHPI	GGTGA	3 cut(s)	130, 130, 489
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	3 cut(s)	103, 262, 615
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	387
BcoDI	GTCTC	3 cut(s)	41, 700, 730
BfaI	CTAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	292, 461
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	2 cut(s)	7, 415
BmuI	ACTGGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	718
BsaBI	GATNNNNATC	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	22, 183, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	679
Bse1I	ACTGG	2 cut(s)	86, 737
Bse8I	GATNNNNATC	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	22, 183, 288
BseJI	GATNNNNATC	1 cut(s)	593
BseLI	CCNNNNNNNGG	1 cut(s)	679
BseMII	CTCAG	3 cut(s)	254, 302, 689
BseNI	ACTGG	2 cut(s)	86, 737
BseXI	GCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	679
BsmAI	GTCTC	3 cut(s)	41, 700, 730
BsmBI	CGTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	463
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	30, 173
BspACI	CCGC	2 cut(s)	315, 402
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	255, 303, 688
BspLI	GGNNCC	1 cut(s)	462
BspPI	GGATC	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	86, 737
BssECI	CCNNGG	3 cut(s)	22, 183, 288
BssMI	GATC	2 cut(s)	30, 173
BssSI	CACGAG	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	82, 641
BstBAI	YACGTR	1 cut(s)	718
BstDEI	CTNAG	3 cut(s)	263, 311, 675
BstDSI	CCRYGG	1 cut(s)	22
BstKTI	GATC	2 cut(s)	33, 176
BstMAI	GTCTC	3 cut(s)	41, 700, 730
BstMBI	GATC	2 cut(s)	30, 173
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	3 cut(s)	579, 658, 713
BstSCI	CCNGG	1 cut(s)	526
BstSNI	TACGTA	1 cut(s)	718
BstV1I	GCAGC	1 cut(s)	440
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	260, 646
Cfr13I	GGNCC	2 cut(s)	292, 461
Csp6I	GTAC	1 cut(s)	719
CspCI	CAANNNNNGTGG	2 cut(s)	32, 67
CviAII	CATG	4 cut(s)	533, 576, 655, 710
CviJI	RGCY	5 cut(s)	115, 280, 334, 431, 463
CviKI_1	RGCY	5 cut(s)	115, 280, 334, 431, 463
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	3 cut(s)	263, 311, 675
DpnI	GATC	2 cut(s)	32, 175
DpnII	GATC	2 cut(s)	30, 173
Eco105I	TACGTA	1 cut(s)	718
Eco130I	CCWWGG	1 cut(s)	288
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	730
FaeI	CATG	4 cut(s)	536, 579, 658, 713
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	532, 575, 654, 709
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	463
Hin1II	CATG	4 cut(s)	536, 579, 658, 713
HinfI	GANTC	3 cut(s)	274, 284, 364
HphI	GGTGA	3 cut(s)	130, 130, 489
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	2 cut(s)	106, 663
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	715
HpyAV	CCTTC	2 cut(s)	50, 503
HpyCH4III	ACNGT	2 cut(s)	82, 641
HpyCH4IV	ACGT	2 cut(s)	717, 739
HpyCH4V	TGCA	5 cut(s)	159, 248, 356, 428, 615
HpyF3I	CTNAG	3 cut(s)	263, 311, 675
HpySE526I	ACGT	2 cut(s)	717, 739
Hsp92II	CATG	4 cut(s)	536, 579, 658, 713
Kzo9I	GATC	2 cut(s)	30, 173
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	8 cut(s)	99, 101, 342, 474, 513, 540, 688, 718
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	7, 415
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	2 cut(s)	717, 739
MaeIII	GTNAC	2 cut(s)	88, 600
MalI	GATC	2 cut(s)	32, 175
MbiI	CCGCTC	1 cut(s)	315
MboI	GATC	2 cut(s)	30, 173
MboII	GAAGA	4 cut(s)	40, 127, 547, 676
MfeI	CAATTG	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	5 cut(s)	189, 268, 380, 410, 564
MlyI	GAGTC	2 cut(s)	283, 293
MmeI	TCCRAC	3 cut(s)	252, 486, 660
MnlI	CCTC	8 cut(s)	151, 178, 227, 305, 384, 474, 618, 684
MroXI	GAANNNNTTC	2 cut(s)	517, 668
MseI	TTAA	2 cut(s)	128, 470
MspR9I	CCNGG	1 cut(s)	528
MunI	CAATTG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	528
NdeII	GATC	2 cut(s)	30, 173
NlaIII	CATG	4 cut(s)	536, 579, 658, 713
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	1 cut(s)	600
NspI	RCATGY	3 cut(s)	579, 658, 713
PciI	ACATGT	2 cut(s)	575, 709
PctI	GAATGC	1 cut(s)	356
PdmI	GAANNNNTTC	2 cut(s)	517, 668
PfeI	GAWTC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	526
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	2 cut(s)	282, 292
PpsI	GAGTC	2 cut(s)	282, 292
Ppu21I	YACGTR	1 cut(s)	718
PscI	ACATGT	2 cut(s)	575, 709
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	292, 461
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	2 cut(s)	128, 470
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	30, 173
Sau96I	GGNCC	2 cut(s)	292, 461
SchI	GAGTC	2 cut(s)	283, 293
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	409
SfaNI	GCATC	2 cut(s)	7, 415
SinI	GGWCC	1 cut(s)	292
SnaBI	TACGTA	1 cut(s)	718
Sse9I	AATT	5 cut(s)	189, 268, 380, 410, 564
SsiI	CCGC	2 cut(s)	315, 402
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	82, 641
TaiI	ACGT	2 cut(s)	720, 742
TasI	AATT	5 cut(s)	189, 268, 380, 410, 564
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	2 cut(s)	128, 470
Tru9I	TTAA	2 cut(s)	128, 470
TscAI	CASTG	2 cut(s)	267, 646
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	600
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	267, 646
VpaK11BI	GGWCC	1 cut(s)	292
XceI	RCATGY	3 cut(s)	579, 658, 713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	517, 668
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.