Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0016919

Physical Location & Seq

Genomic Coordinates Forward (+)

10959250 .. 10960316

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCAAGAAAAGGACCATGGTTGGCCCCATCTCCAAAAGCCAAAAGGTCCTACAAATGTACCAACTCCTATATATATGAATGGGAGTAGAGTAATCGGTCCCATAACTAAATATTTTAAATTCAGTTTTTTGCCCTTCAGCAACAATGCAAAGAAGTGCTTCTTTCGTTTCTTCAAAAATGCAAAGAAGTGCCTCCTTCGTTTCTTCAAAAATGCAAAGAAGTGCCTCTTTCGTTTCTTCAAAAATGCAAAGAAGTGCCTCCTTCGTTTCTTCTTGGTATTTGAACGTGTCACGATTGGCGGGCAGTGCCAAGAACTACGTAGCGAGCAAGGCGCAGGGGTATGTGGAATCGAGATTGTTGGGAACCAAAGCTTGGACTCCACAGAACTCGTCTTCGAGATATCTATCTTCAACCCCTTTGAGTTCTATCTCCCTGTCAGTCAGGCTTCTTTCAAATTCAAAAGCGCCGGCAGCGAGGTCTTAACAGGAACATTGAAAGATGCCGCGTCGCTGAAGCCCGGAGAAGAGTCGATTATGTTTGTGTTAGTGAAGGTGCCATTAAGAGTGTTCATAAACTTCGCAAAGGACATATCTGGGGATGCAGATATTAACTATGAGATCGATTTGAGTGTCAAGATTAAGTTTCCTGTAATTGGGAACGTTGTATCCTTACCAATTCCTTGTCAATGCCAACAGGGCGAACTCAAGCTTTCTCATCTGTTTTCCAAATTGTTGGACCAAATCAATCCTCAGCAGCTGGTGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

256

Amino Acids

28.85

Weight (kDa)

9.42

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15470
malus_domestica	MD01G1072000.v1.1
prunus_persica	Prupe.2G178300_v2.0.a1
pyrus_communis	pycom01g10120
rosa_chinensis	RchiOBHm_Chr1g0357781
rosa_laevigata	RLG00000027997
rosa_multiflora	Rmu_sc0011109.1_g000014
rosa_roxburghii	Rroxscaffold_4G00298520
rosa_rugosa	Rorug01G0258600
rosa_samantha	Rh1AG272500 Rh1BG239700 Rh1CG256400 Rh1DG268000
rosa_wichuraiana	Rw1G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	553, 760
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	1 cut(s)	506
AciI	CCGC	2 cut(s)	300, 504
AclI	AACGTT	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	119, 455
AcuI	CTGAAG	2 cut(s)	121, 533
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	373, 653
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	8 cut(s)	175, 208, 241, 284, 412, 454, 460, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	3 cut(s)	372, 709, 757
AluI	AGCT	3 cut(s)	372, 709, 757
AlwNI	CAGNNNCTG	1 cut(s)	757
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	471, 754
ApoI	RAATTY	2 cut(s)	119, 455
Asp700I	GAANNNNTTC	1 cut(s)	158
AspLEI	GCGC	2 cut(s)	335, 467
AspS9I	GGNCC	5 cut(s)	13, 24, 47, 98, 736
AsuC2I	CCSGG	1 cut(s)	519
AvaII	GGWCC	4 cut(s)	13, 47, 98, 736
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	2 cut(s)	553, 760
BbsI	GAAGAC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	750
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	676
BglI	GCCNNNNNGGC	1 cut(s)	696
BisI	GCNGC	3 cut(s)	472, 504, 755
BlsI	GCNGC	3 cut(s)	473, 505, 756
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	4 cut(s)	13, 47, 98, 736
BmgT120I	GGNCC	5 cut(s)	13, 24, 47, 98, 736
BmiI	GGNNCC	5 cut(s)	26, 100, 365, 555, 762
BmrFI	CCNGG	1 cut(s)	519
BmsI	GCATC	2 cut(s)	490, 589
BpiI	GAAGAC	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	621
BsaAI	YACGTR	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 653
Bse118I	RCCGGY	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	404
BseCI	ATCGAT	1 cut(s)	621
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	1 cut(s)	604
BseJI	GATNNNNATC	1 cut(s)	404
BseLI	CCNNNNNNNGG	2 cut(s)	373, 653
BseMII	CTCAG	1 cut(s)	764
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	2 cut(s)	553, 760
BshVI	ATCGAT	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	468, 519
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	373, 653
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	618
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	2 cut(s)	300, 504
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	763
BspDI	ATCGAT	1 cut(s)	621
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	5 cut(s)	26, 100, 365, 555, 762
BspT107I	GGYRCC	2 cut(s)	553, 760
BsrFI	RCCGGY	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	618
BssT1I	CCWWGG	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	519
BstAPI	GCANNNNNTGC	1 cut(s)	760
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	3 cut(s)	302, 326, 469
BstDEI	CTNAG	1 cut(s)	750
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	335, 467
BstKTI	GATC	1 cut(s)	621
BstMBI	GATC	1 cut(s)	618
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 330, 471, 696, 760
BstSCI	CCNGG	1 cut(s)	517
BstSNI	TACGTA	1 cut(s)	320
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	483
BstV2I	GAAGAC	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	621
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	604
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	302, 326, 469
CaiI	CAGNNNCTG	1 cut(s)	757
CfoI	GCGC	2 cut(s)	335, 467
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	5 cut(s)	13, 24, 47, 98, 736
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	7 cut(s)	25, 40, 372, 446, 517, 709, 757
CviKI_1	RGCY	7 cut(s)	25, 40, 372, 446, 517, 709, 757
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	1 cut(s)	750
DpnI	GATC	1 cut(s)	620
DpnII	GATC	1 cut(s)	618
DraI	TTTAAA	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco105I	TACGTA	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	4 cut(s)	13, 47, 98, 736
Eco57I	CTGAAG	2 cut(s)	121, 533
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	20
FalI	AAGNNNNNCTT	6 cut(s)	143, 175, 146, 178, 212, 244
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	16
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	472, 504, 755
FokI	GGATG	1 cut(s)	611
Fsp4HI	GCNGC	3 cut(s)	472, 504, 755
GlaI	GCGC	2 cut(s)	334, 466
GluI	GCNGC	3 cut(s)	472, 504, 755
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	468, 519
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	2 cut(s)	335, 467
Hin1II	CATG	1 cut(s)	20
Hin6I	GCGC	2 cut(s)	333, 465
HinP1I	GCGC	2 cut(s)	333, 465
HindIII	AAGCTT	2 cut(s)	370, 707
HinfI	GANTC	3 cut(s)	348, 377, 527
HpaII	CCGG	2 cut(s)	468, 519
Hpy188III	TCNNGA	4 cut(s)	292, 352, 397, 634
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	4 cut(s)	145, 206, 272, 544
HpyCH4IV	ACGT	3 cut(s)	286, 319, 660
HpyCH4V	TGCA	6 cut(s)	4, 149, 182, 215, 248, 602
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 330, 471, 696, 760
HpyF3I	CTNAG	1 cut(s)	750
HpySE526I	ACGT	3 cut(s)	286, 319, 660
Hsp92II	CATG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	333, 465
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	618
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	2 cut(s)	490, 589
MaeII	ACGT	3 cut(s)	286, 319, 660
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	620
MboI	GATC	1 cut(s)	618
MboII	GAAGA	7 cut(s)	163, 196, 229, 262, 385, 400, 536
MluCI	AATT	5 cut(s)	119, 455, 651, 675, 728
MlyI	GAGTC	2 cut(s)	371, 536
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	5 cut(s)	203, 236, 269, 469, 759
MroNI	GCCGGC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	6 cut(s)	117, 482, 560, 609, 639, 766
MspA1I	CMGCKG	1 cut(s)	757
MspI	CCGG	2 cut(s)	468, 519
MspR9I	CCNGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	5 cut(s)	306, 330, 471, 696, 760
NaeI	GCCGGC	1 cut(s)	469
NciI	CCSGG	1 cut(s)	519
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	1 cut(s)	618
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	5 cut(s)	26, 100, 365, 555, 762
NmuCI	GTSAC	1 cut(s)	289
PdiI	GCCGGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	348
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	473, 505, 756
PleI	GAGTC	2 cut(s)	371, 535
PpsI	GAGTC	2 cut(s)	371, 535
Ppu21I	YACGTR	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	47
PspN4I	GGNNCC	5 cut(s)	26, 100, 365, 555, 762
PspPI	GGNCC	5 cut(s)	13, 24, 47, 98, 736
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	757
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SaqAI	TTAA	6 cut(s)	117, 482, 560, 609, 639, 766
SatI	GCNGC	3 cut(s)	472, 504, 755
Sau3AI	GATC	1 cut(s)	618
Sau96I	GGNCC	5 cut(s)	13, 24, 47, 98, 736
SchI	GAGTC	2 cut(s)	371, 536
ScrFI	CCNGG	1 cut(s)	519
SetI	ASST	9 cut(s)	49, 289, 322, 374, 480, 555, 663, 711, 759
SfaNI	GCATC	2 cut(s)	490, 589
SinI	GGWCC	4 cut(s)	13, 47, 98, 736
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SnaBI	TACGTA	1 cut(s)	320
Sse9I	AATT	5 cut(s)	119, 455, 651, 675, 728
SsiI	CCGC	2 cut(s)	300, 504
SspI	AATATT	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	1 cut(s)	16
TaiI	ACGT	3 cut(s)	289, 322, 663
TaqI	TCGA	4 cut(s)	351, 396, 530, 621
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	5 cut(s)	119, 455, 651, 675, 728
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	6 cut(s)	117, 482, 560, 609, 639, 766
Tru9I	TTAA	6 cut(s)	117, 482, 560, 609, 639, 766
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	471, 754
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	92, 559
TspRI	CASTG	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	4 cut(s)	13, 47, 98, 736
XapI	RAATTY	2 cut(s)	119, 455
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.