Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011109.1

Orthogroup ID

OG0016919

Physical Location & Seq

Genomic Coordinates Reverse (-)

37177 .. 38273

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011109.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgtctctgtttttgtcttcaacagcgaacattttaagctctctgtatttgaaagtgtcggagttgttgggcactgccaagaactatattgtgaacaaggccaggggttatgttttggcaaggttggttgagatgcagaggaggtctgcgcttattgtagaccttcaacttgaggatataagcttcgactccatagatctccttttcaagatctctgtgtacaactcatttcagttttctctgcctgtcagtcaagcctccttcaaaatgaaaatcggtggcagtgaacctttattagggaaattgaaggagcccgtgtacataaaggcaggagcagattctatattgcttttgtcagcgaaggtgccatttagtatgcctataaatttggcaaatgacatttctgtagatgcagacattgactaccgcatcgatttccaactcacaattcaccttcctatcatcggcaacatctctttaccacttccttgccaacaaggcgagaccaagatctccgatttgtttagcaatttgatggatcaaatcataatgagttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009642 GO:0009644 GO:0016020 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

186

Amino Acids

20.66

Weight (kDa)

5.37

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016919)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15470
malus_domestica	MD01G1072000.v1.1
prunus_persica	Prupe.2G178300_v2.0.a1
pyrus_communis	pycom01g10120
rosa_chinensis	RchiOBHm_Chr1g0357781
rosa_laevigata	RLG00000027997
rosa_multiflora	Rmu_sc0011109.1_g000014
rosa_roxburghii	Rroxscaffold_4G00298520
rosa_rugosa	Rorug01G0258600
rosa_samantha	Rh1AG272500 Rh1BG239700 Rh1CG256400 Rh1DG268000
rosa_wichuraiana	Rw1G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	385
AfaI	GTAC	2 cut(s)	221, 320
AfiI	CCNNNNNNNGG	2 cut(s)	296, 464
AgsI	TTSAA	6 cut(s)	21, 52, 167, 208, 265, 307
AjnI	CCWGG	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	2 cut(s)	39, 183
AluI	AGCT	2 cut(s)	39, 183
Alw26I	GTCTC	2 cut(s)	9, 497
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	443
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	9
BccI	CCATC	1 cut(s)	529
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	9, 497
BfmI	CTRYAG	1 cut(s)	405
BglI	GCCNNNNNGGC	1 cut(s)	498
BglII	AGATCT	3 cut(s)	196, 210, 510
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	312, 366
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	123, 400, 438
BpiI	GAAGAC	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 464
BseBI	CCWGG	1 cut(s)	103
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	2 cut(s)	296, 464
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	364
BshVI	ATCGAT	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	296, 464
BsmAI	GTCTC	2 cut(s)	9, 497
BsnI	GGCC	1 cut(s)	101
Bso31I	GGTCTC	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	74, 315
Bsp1407I	TGTACA	2 cut(s)	219, 318
Bsp143I	GATC	4 cut(s)	196, 210, 510, 538
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	1 cut(s)	101
BspDI	ATCGAT	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	312, 366
BspPI	GGATC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	497
BsrGI	TGTACA	2 cut(s)	219, 318
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	4 cut(s)	196, 210, 510, 538
Bst2UI	CCWGG	1 cut(s)	103
BstAUI	TGTACA	2 cut(s)	219, 318
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	4 cut(s)	199, 213, 513, 541
BstMAI	GTCTC	2 cut(s)	9, 497
BstMBI	GATC	4 cut(s)	196, 210, 510, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	405
BstSLI	GKGCMC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	3 cut(s)	196, 210, 510
BstYI	RGATCY	3 cut(s)	196, 210, 510
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	432
BtsI	GCAGTG	2 cut(s)	72, 289
BtsIMutI	CAGTG	2 cut(s)	72, 289
CfoI	GCGC	1 cut(s)	151
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	220, 319
CviJI	RGCY	5 cut(s)	39, 101, 183, 257, 313
CviKI_1	RGCY	5 cut(s)	39, 101, 183, 257, 313
CviQI	GTAC	2 cut(s)	220, 319
DpnI	GATC	4 cut(s)	198, 212, 512, 540
DpnII	GATC	4 cut(s)	196, 210, 510, 538
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	315
FaiI	YATR	9 cut(s)	87, 111, 179, 194, 323, 344, 377, 383, 548
FblI	GTMKAC	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	315
GlaI	GCGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	2 cut(s)	188, 338
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	5 cut(s)	94, 160, 220, 287, 319
Hpy188I	TCNGA	2 cut(s)	61, 517
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	5 cut(s)	94, 160, 220, 287, 319
HpyAV	CCTTC	5 cut(s)	173, 271, 301, 355, 464
HpyCH4V	TGCA	2 cut(s)	136, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	196, 210, 510, 538
LmnI	GCTCC	2 cut(s)	310, 332
LpnPI	CCDG	4 cut(s)	88, 115, 258, 315
LweI	GCATC	3 cut(s)	123, 400, 438
MalI	GATC	4 cut(s)	198, 212, 512, 540
MboI	GATC	4 cut(s)	196, 210, 510, 538
MboII	GAAGA	1 cut(s)	9
MflI	RGATCY	3 cut(s)	196, 210, 510
MhlI	GDGCHC	2 cut(s)	74, 315
MluCI	AATT	4 cut(s)	302, 385, 447, 529
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	39, 463
MnlI	CCTC	4 cut(s)	132, 135, 166, 268
MseI	TTAA	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	498
NdeII	GATC	4 cut(s)	196, 210, 510, 538
NlaIV	GGNNCC	2 cut(s)	312, 366
PfeI	GAWTC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	312, 366
PsuI	RGATCY	3 cut(s)	196, 210, 510
RsaI	GTAC	2 cut(s)	221, 320
RsaNI	GTAC	2 cut(s)	220, 319
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	4 cut(s)	196, 210, 510, 538
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	74, 315
SetI	ASST	8 cut(s)	41, 125, 146, 165, 185, 292, 366, 456
SfaNI	GCATC	3 cut(s)	123, 400, 438
SfcI	CTRYAG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	4 cut(s)	302, 385, 447, 529
SsiI	CCGC	1 cut(s)	427
StyD4I	CCNGG	1 cut(s)	101
TaqI	TCGA	2 cut(s)	186, 432
TasI	AATT	4 cut(s)	302, 385, 447, 529
TatI	WGTACW	2 cut(s)	219, 318
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	2 cut(s)	79, 289
TspDTI	ATGAA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	79, 289
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.