FvH4_7g15800

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009202
Physical Location & Seq
Reverse (-)
13648121 .. 13650460
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g15800.t1

Sequence Viewer

Length: 822 bp
ATGGGGAGGTGTTCAGCAAAAGCTCTCAATCTCCATAAGCTTTTGCATGTATGGACGATAATGGTGGCAACTTTGATCTGCTTAAGTGATTCTAAATGTGATTTCCAGGCGATCTTCAACTTCGGTGACTCGAATTCAGATACCGGCGGGTTTTGGGCAGCATTTCCGGCACAGTCCGGACCCTTCGGCATGACCTATTTCAAGAAACCGACGGGTCGGGCTTCCGATGGGAGGCTCATTGTTGATTTCTTGGCTCAAGCTCTAGGATTACCATTCCTGAGTCCATATCTGCAATCTATTGGATCCGATTACAGACATGGAGTAAACTTTGCGACATTAGCATCCACCGTGCTTTTGCCGAACACTTCCTTGTTTGTTACCGGAATCAGTCCATTCTCTCTCGCTATCCAGCTCAACCAAATGAAGGCATTCAAGACCCGAGTTGAAGAGTTTCATCAATCCAACTTGGATAAACAAGAAAACCTTCCTTCCCCGGATATTTTTGGGAGATCACTCTACACGTTCTATATTGGCCAAAACGATTTCACTTCCAATTTAGGAGCCATTGGTGTAGGTGGAGTGAGGCAATATCTTCCTCAAGTGGTCTCCCAAATTGCAGGTACCATCAAGGAGGGCGTGCATTTCTGGTACTTAATCTGGCACCAGTGGGTTGCTATCCCGCATTTCTGGAAGGGCTTCCCCTTTCCGAACTCGATGCTTTTGGTTGCTCGATTTCTTACAACAATGCAGTACAAGACTACAACAACATGCTTAGGGAGACACTTTCGCAAACTAGAGCCTCTCTCCAAAATGCTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

274

Amino Acids

30.56

Weight (kDa)

9.39

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 38 - 227 4e-23 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 608
Acc65I GGTACC 1 cut(s) 620
AccB1I GGYRCC 2 cut(s) 620, 660
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 2 cut(s) 147, 680
AclWI GGATC 2 cut(s) 297, 310
AcoI YGGCCR 1 cut(s) 532
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 3 cut(s) 622, 650, 752
AfiI CCNNNNNNNGG 2 cut(s) 231, 424
AflII CTTAAG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 4 cut(s) 118, 202, 433, 446
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 4 cut(s) 23, 40, 260, 412
AluI AGCT 4 cut(s) 23, 40, 260, 412
Alw26I GTCTC 2 cut(s) 610, 772
AlwI GGATC 2 cut(s) 297, 310
Ama87I CYCGRG 1 cut(s) 438
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 4 cut(s) 428, 450, 483, 695
Asp718I GGTACC 1 cut(s) 620
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 179
BalI TGGCCA 1 cut(s) 534
BamHI GGATCC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 620, 660
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 221, 632
BcgI CGANNNNNNTGC 2 cut(s) 697, 731
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 2 cut(s) 610, 772
BfaI CTAG 2 cut(s) 263, 794
BfrI CTTAAG 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 107, 494
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 5 cut(s) 181, 304, 562, 622, 662
BmrFI CCNGG 2 cut(s) 107, 494
BmsI GCATC 2 cut(s) 350, 705
BplI GAGNNNNNCTC 2 cut(s) 788, 820
Bpu10I CCTNAGC 1 cut(s) 772
BpuEI CTTGAG 2 cut(s) 240, 582
BpuMI CCSGG 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 1 cut(s) 492
BsaWI WCCGGW 2 cut(s) 176, 380
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 424
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 664
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 2 cut(s) 231, 424
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 664
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 534
BshNI GGYRCC 2 cut(s) 620, 660
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 5 cut(s) 144, 167, 177, 381, 494
BslI CCNNNNNNNGG 2 cut(s) 231, 424
BsmAI GTCTC 2 cut(s) 610, 772
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 1 cut(s) 534
Bso31I GGTCTC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 438
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 4 cut(s) 75, 111, 302, 509
BspACI CCGC 2 cut(s) 147, 680
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 1 cut(s) 270
BspEI TCCGGA 1 cut(s) 176
BspLI GGNNCC 5 cut(s) 181, 304, 562, 622, 662
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 2 cut(s) 297, 310
BspT107I GGYRCC 2 cut(s) 620, 660
BspTI CTTAAG 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 664
BssAI RCCGGY 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 4 cut(s) 75, 111, 302, 509
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 2 cut(s) 174, 349
Bst6I CTCTTC 1 cut(s) 441
BstAFI CTTAAG 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 638
BstDEI CTNAG 2 cut(s) 278, 772
BstF5I GGATG 1 cut(s) 341
BstKTI GATC 4 cut(s) 78, 114, 305, 512
BstMAI GTCTC 2 cut(s) 610, 772
BstMBI GATC 4 cut(s) 75, 111, 302, 509
BstMWI GCNNNNNNNGC 2 cut(s) 167, 338
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 2 cut(s) 50, 771
BstSCI CCNGG 2 cut(s) 105, 492
BstV1I GCAGC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 1 cut(s) 534
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 671
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 638
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 3 cut(s) 621, 649, 751
CviAII CATG 4 cut(s) 47, 190, 317, 768
CviQI GTAC 3 cut(s) 621, 649, 751
DdeI CTNAG 2 cut(s) 278, 772
DpnI GATC 4 cut(s) 77, 113, 304, 511
DpnII GATC 4 cut(s) 75, 111, 302, 509
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 179
Eco88I CYCGRG 1 cut(s) 438
EcoRI GAATTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 105
FaeI CATG 4 cut(s) 50, 193, 320, 771
FaiI YATR 8 cut(s) 36, 48, 52, 191, 286, 318, 528, 769
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 4 cut(s) 46, 189, 316, 767
FauI CCCGC 2 cut(s) 140, 687
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 2 cut(s) 263, 794
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 534
HapII CCGG 5 cut(s) 144, 167, 177, 381, 494
Hin1II CATG 4 cut(s) 50, 193, 320, 771
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 4 cut(s) 89, 128, 280, 384
HpaII CCGG 5 cut(s) 144, 167, 177, 381, 494
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 4 cut(s) 139, 226, 307, 708
Hpy188III TCNNGA 5 cut(s) 177, 202, 277, 433, 688
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 5 cut(s) 193, 418, 494, 498, 685
HpyCH4III ACNGT 2 cut(s) 174, 349
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 5 cut(s) 46, 292, 617, 640, 748
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 338
HpyF3I CTNAG 2 cut(s) 278, 772
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 4 cut(s) 50, 193, 320, 771
Kpn2I TCCGGA 1 cut(s) 176
KpnI GGTACC 1 cut(s) 624
Kzo9I GATC 4 cut(s) 75, 111, 302, 509
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 2 cut(s) 350, 705
MaeI CTAG 2 cut(s) 263, 794
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 125, 376
MalI GATC 4 cut(s) 77, 113, 304, 511
MboI GATC 4 cut(s) 75, 111, 302, 509
MboII GAAGA 3 cut(s) 106, 458, 584
MflI RGATCY 1 cut(s) 302
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 3 cut(s) 133, 553, 612
MluNI TGGCCA 1 cut(s) 534
MlyI GAGTC 2 cut(s) 122, 289
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 5 cut(s) 225, 576, 606, 625, 810
Mox20I TGGCCA 1 cut(s) 534
MroI TCCGGA 1 cut(s) 176
MroXI GAANNNNTTC 4 cut(s) 428, 450, 483, 695
MscI TGGCCA 1 cut(s) 534
MseI TTAA 2 cut(s) 83, 653
Msp20I TGGCCA 1 cut(s) 534
MspCI CTTAAG 1 cut(s) 82
MspI CCGG 5 cut(s) 144, 167, 177, 381, 494
MspR9I CCNGG 2 cut(s) 107, 494
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 167, 338
NciI CCSGG 1 cut(s) 494
NdeII GATC 4 cut(s) 75, 111, 302, 509
NlaIII CATG 4 cut(s) 50, 193, 320, 771
NlaIV GGNNCC 5 cut(s) 181, 304, 562, 622, 662
NmuCI GTSAC 1 cut(s) 125
NspI RCATGY 2 cut(s) 50, 771
PctI GAATGC 1 cut(s) 428
PdmI GAANNNNTTC 4 cut(s) 428, 450, 483, 695
PfeI GAWTC 2 cut(s) 89, 384
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 2 cut(s) 122, 288
PpsI GAGTC 2 cut(s) 122, 288
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 5 cut(s) 181, 304, 562, 622, 662
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 1 cut(s) 302
RsaI GTAC 3 cut(s) 622, 650, 752
RsaNI GTAC 3 cut(s) 621, 649, 751
SaqAI TTAA 2 cut(s) 83, 653
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 4 cut(s) 75, 111, 302, 509
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 2 cut(s) 122, 289
ScrFI CCNGG 2 cut(s) 107, 494
SfaNI GCATC 2 cut(s) 350, 705
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 3 cut(s) 82, 255, 597
SmoI CTYRAG 3 cut(s) 82, 255, 597
Sse9I AATT 3 cut(s) 133, 553, 612
SsiI CCGC 2 cut(s) 147, 680
SspMI CTAG 2 cut(s) 263, 794
StyD4I CCNGG 2 cut(s) 105, 492
TaaI ACNGT 2 cut(s) 174, 349
TaiI ACGT 1 cut(s) 524
TaqI TCGA 3 cut(s) 131, 713, 730
TasI AATT 3 cut(s) 133, 553, 612
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 2 cut(s) 89, 384
Tru1I TTAA 2 cut(s) 83, 653
Tru9I TTAA 2 cut(s) 83, 653
TscAI CASTG 1 cut(s) 671
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 437, 443
TspRI CASTG 1 cut(s) 671
Vha464I CTTAAG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 133
XceI RCATGY 2 cut(s) 50, 771
XmnI GAANNNNTTC 4 cut(s) 428, 450, 483, 695
XspI CTAG 2 cut(s) 263, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.