Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009202

Physical Location & Seq

Genomic Coordinates Reverse (-)

16163438 .. 16166071

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGCCTGTGTGTACCAAAAATTTGTGTCCTCCACAAGATTTTAATCGTATGGATGACAGTGGTGGCAACTTTGAGTTGTTTAGGTCACTCTAAATGTGAATTCGAGGGAATTTTCAATTTTGGAGATTCGAACTCAGATACAGGAGGATTTTGGGCAGCTTTTCCGGCGCAATCTGGACCCAATGGCATGACATACTTCAAGAGACCTGTTGGTCGGGCTACAGATGGGAGGCTCATTGTTGATTTTCTAGCTCAAGCTCTAGGGTTACCATTTATAAGTCCATACCTGAAATCAATTGGATCTGATTATAAACATGGGGCAAACTATGCAACACTAGCATCCACTGTGCTTTTGCCAAACACTTCCTTGTTTGTCACTGGAATCAGCCCATTCTCTCTGGCCATCCAGCTCAACCAAATGAAGGCATTCAAGACCCAAGTTGAAGAGTTTCACCACTCCTCGAATCAACAAGAACTGAAGAGACTTCCCTCCCTGGATATTTTTGGGAAATCACTCTACACATTCTACATTGGCCAAAACGATTTCACCTCCAATTTGGCAGCCATTGGTGTAGGTGGAGTGAAGCAATATCTTCCTCAAGTGGTCTCTCAAATTGCTGGTACCATCAAGGAGCTATATGCGTTAGGAGGGCGTGCATTTCTGGTACTTAATCTGGCACCAGTGGGTTGTTATCCATCATTTTTGGCGGGGCTTCCTCCTTCTGAACTCGACGCATTTGGATGCTCAATTGCTTACAACAACGCAGTCGTGGACTACAACAAGTTGTTGAAGGAGGCACTTAGCCAAACTAGAGGCTCCCTCCCAAATGGTTCCCTCATATATGTGGATACCTCCTCTGTTTTGCTTGAGCTCTTTAGGCATCCCACATCTCATGGCTTGAAGTATGGTACAAAATCATGTTGTGGGCATGGTGGTGGTGCCCATAATTTTGACCCTCAAGTTTTTTGTGGAAATACAAAGGTGATCAATGGGAGACCTGTGACTGCAACTGCTTGTAGTGACCCTTACAACTATGTGAGCTGGGATGGAGTCCATGCCACAGAAGCTGCAAACAAGCTAACAACATTGGCTATCCTCAACGGCACTTTCTCAGACCCTCCCCTTCCCTTTGAGCAGTTCTGTGACCTCCACAGTATCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

389

Amino Acids

41.8

Weight (kDa)

7.13

Isoelectric Point (pI)

32.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01130 AT4G01130 AT4G01130
fragaria_vesca	FvH4_7g15800 FvH4_7g15800 FvH4_7g15800 FvH4_7g15800
malus_domestica	MD07G1143600.v1.1 MD07G1143700.v1.1
prunus_persica	Prupe.2G182700_v2.0.a1
pyrus_communis	pycom07g14210
rosa_chinensis	RchiOBHm_Chr1g0358591
rosa_laevigata	RLG00000027943
rosa_multiflora	Rmu_sc0001609.1_g000017
rosa_roxburghii	Rroxscaffold_4G00297770
rosa_rugosa	Rorug01G0262700 Rorug01G0262700
rosa_samantha	Rh1AG277700 Rh1BG244400 Rh1CG261200 Rh1DG272600
rosa_wichuraiana	Rw1G024660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	278, 312
AasI	GACNNNNNNGTC	1 cut(s)	213
Acc65I	GGTACC	1 cut(s)	623
AccB1I	GGYRCC	3 cut(s)	623, 679, 941
AciI	CCGC	1 cut(s)	710
AclWI	GGATC	1 cut(s)	310
AcoI	YGGCCR	2 cut(s)	402, 535
AcsI	RAATTY	3 cut(s)	21, 101, 111
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	4 cut(s)	15, 625, 669, 913
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	6 cut(s)	118, 202, 433, 446, 793, 904
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	9 cut(s)	161, 254, 260, 412, 637, 874, 1044, 1070, 1081
AluI	AGCT	9 cut(s)	161, 254, 260, 412, 637, 874, 1044, 1070, 1081
Alw21I	GWGCWC	1 cut(s)	876
Alw26I	GTCTC	4 cut(s)	199, 478, 613, 991
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	1070
AoxI	GGCC	2 cut(s)	402, 535
ApeKI	GCWGC	3 cut(s)	158, 563, 1070
ApoI	RAATTY	3 cut(s)	21, 101, 111
Asp700I	GAANNNNTTC	2 cut(s)	428, 450
Asp718I	GGTACC	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	446, 541, 997
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	946
BalI	TGGCCA	2 cut(s)	404, 537
BanI	GGYRCC	3 cut(s)	623, 679, 941
BanII	GRGCYC	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	876
BbvI	GCAGC	3 cut(s)	170, 575, 1057
BccI	CCATC	5 cut(s)	221, 413, 635, 706, 1043
BceAI	ACGGC	1 cut(s)	1120
BciT130I	CCWGG	1 cut(s)	497
BciVI	GTATCC	1 cut(s)	844
BclI	TGATCA	1 cut(s)	987
BcoDI	GTCTC	4 cut(s)	199, 478, 613, 991
BfaI	CTAG	4 cut(s)	251, 263, 338, 813
BfmI	CTRYAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	844
BisI	GCNGC	3 cut(s)	159, 564, 1071
BlsI	GCNGC	3 cut(s)	160, 565, 1072
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	6 cut(s)	181, 625, 681, 820, 835, 943
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	350, 734, 892
BplI	GAGNNNNNCTC	2 cut(s)	807, 839
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	4 cut(s)	240, 585, 890, 945
BsaBI	GATNNNNATC	1 cut(s)	44
BsaI	GGTCTC	3 cut(s)	199, 613, 991
BsaJI	CCNNGG	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	2 cut(s)	385, 683
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	6 cut(s)	60, 341, 405, 749, 883, 1054
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	150, 1128
BseNI	ACTGG	2 cut(s)	385, 683
BseRI	GAGGAG	2 cut(s)	451, 847
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	3 cut(s)	170, 575, 1057
BseYI	CCCAGC	1 cut(s)	1044
BshFI	GGCC	2 cut(s)	404, 537
BshNI	GGYRCC	3 cut(s)	623, 679, 941
BsiHKAI	GWGCWC	1 cut(s)	876
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	4 cut(s)	199, 478, 613, 991
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	404, 537
Bso31I	GGTCTC	3 cut(s)	199, 613, 991
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	876, 946
Bsp143I	GATC	2 cut(s)	302, 987
BspACI	CCGC	1 cut(s)	710
BspANI	GGCC	2 cut(s)	404, 537
BspCNI	CTCAG	2 cut(s)	149, 1127
BspLI	GGNNCC	6 cut(s)	181, 625, 681, 820, 835, 943
BspPI	GGATC	1 cut(s)	310
BspT104I	TTCGAA	1 cut(s)	131
BspT107I	GGYRCC	3 cut(s)	623, 679, 941
BspTNI	GGTCTC	3 cut(s)	199, 613, 991
BsrI	ACTGG	2 cut(s)	385, 683
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	302, 987
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	3 cut(s)	61, 349, 1157
Bst6I	CTCTTC	2 cut(s)	441, 476
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	3 cut(s)	136, 803, 1114
BstEII	GGTNACC	1 cut(s)	267
BstF5I	GGATG	6 cut(s)	60, 341, 405, 749, 883, 1054
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	305, 990
BstMAI	GTCTC	4 cut(s)	199, 478, 613, 991
BstMBI	GATC	2 cut(s)	302, 987
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 329, 338, 880, 1067
BstNI	CCWGG	1 cut(s)	497
BstPI	GGTNACC	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	946
BstV1I	GCAGC	3 cut(s)	170, 575, 1057
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	2 cut(s)	404, 537
BtsCI	GGATG	6 cut(s)	60, 341, 405, 749, 883, 1054
BtsIMutI	CAGTG	4 cut(s)	66, 345, 378, 690
Cac8I	GCNNGC	1 cut(s)	657
CaiI	CAGNNNCTG	1 cut(s)	1070
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	179
CseI	GACGC	1 cut(s)	743
Csp6I	GTAC	4 cut(s)	14, 624, 668, 912
CviAII	CATG	6 cut(s)	190, 317, 896, 921, 932, 1058
CviQI	GTAC	4 cut(s)	14, 624, 668, 912
DdeI	CTNAG	3 cut(s)	136, 803, 1114
DpnI	GATC	2 cut(s)	304, 989
DpnII	GATC	2 cut(s)	302, 987
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	2 cut(s)	402, 535
Eam1104I	CTCTTC	2 cut(s)	441, 476
EarI	CTCTTC	2 cut(s)	441, 476
Ecl136II	GAGCTC	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	876
Eco31I	GGTCTC	3 cut(s)	199, 613, 991
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	500
Eco91I	GGTNACC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	874
EcoO65I	GGTNACC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	876
FaeI	CATG	6 cut(s)	193, 320, 899, 924, 935, 1061
FatI	CATG	6 cut(s)	189, 316, 895, 920, 931, 1057
FauI	CCCGC	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	987
Fnu4HI	GCNGC	3 cut(s)	159, 564, 1071
FokI	GGATG	6 cut(s)	67, 328, 392, 756, 870, 1061
FriOI	GRGCYC	1 cut(s)	876
Fsp4HI	GCNGC	3 cut(s)	159, 564, 1071
FspBI	CTAG	4 cut(s)	251, 263, 338, 813
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	159, 564, 1071
GsaI	CCCAGC	1 cut(s)	1048
HaeIII	GGCC	2 cut(s)	404, 537
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	743
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	6 cut(s)	193, 320, 899, 924, 935, 1061
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	4 cut(s)	128, 384, 466, 1053
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	3 cut(s)	446, 541, 997
Hpy166II	GTNNAC	2 cut(s)	14, 775
Hpy188I	TCNGA	4 cut(s)	139, 307, 727, 1117
Hpy188III	TCNNGA	3 cut(s)	177, 202, 433
Hpy8I	GTNNAC	2 cut(s)	14, 775
Hpy99I	CGWCG	1 cut(s)	737
HpyAV	CCTTC	4 cut(s)	418, 732, 787, 1136
HpyCH4III	ACNGT	3 cut(s)	61, 349, 1157
HpyCH4V	TGCA	4 cut(s)	332, 659, 1010, 1073
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 329, 338, 880, 1067
HpyF3I	CTNAG	3 cut(s)	136, 803, 1114
Hsp92II	CATG	6 cut(s)	193, 320, 899, 924, 935, 1061
HspAI	GCGC	1 cut(s)	170
KpnI	GGTACC	1 cut(s)	627
Ksp22I	TGATCA	1 cut(s)	987
Kzo9I	GATC	2 cut(s)	302, 987
LmnI	GCTCC	2 cut(s)	634, 824
Lsp1109I	GCAGC	3 cut(s)	170, 575, 1057
LweI	GCATC	3 cut(s)	350, 734, 892
MaeI	CTAG	4 cut(s)	251, 263, 338, 813
MaeIII	GTNAC	6 cut(s)	86, 267, 376, 1003, 1022, 1145
MalI	GATC	2 cut(s)	304, 989
MboI	GATC	2 cut(s)	302, 987
MboII	GAAGA	3 cut(s)	458, 493, 587
MfeI	CAATTG	2 cut(s)	297, 750
MflI	RGATCY	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	876, 946
MlsI	TGGCCA	2 cut(s)	404, 537
MluCI	AATT	9 cut(s)	21, 101, 111, 118, 297, 556, 615, 750, 949
MluNI	TGGCCA	2 cut(s)	404, 537
MlyI	GAGTC	1 cut(s)	1062
Mox20I	TGGCCA	2 cut(s)	404, 537
MroXI	GAANNNNTTC	2 cut(s)	428, 450
MscI	TGGCCA	2 cut(s)	404, 537
MseI	TTAA	2 cut(s)	44, 672
MslI	CAYNNNNRTG	3 cut(s)	742, 845, 936
Msp20I	TGGCCA	2 cut(s)	404, 537
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	2 cut(s)	297, 750
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	5 cut(s)	167, 329, 338, 880, 1067
NdeII	GATC	2 cut(s)	302, 987
NlaIII	CATG	6 cut(s)	193, 320, 899, 924, 935, 1061
NlaIV	GGNNCC	6 cut(s)	181, 625, 681, 820, 835, 943
NmuCI	GTSAC	5 cut(s)	86, 376, 1003, 1022, 1145
NspV	TTCGAA	1 cut(s)	131
PctI	GAATGC	1 cut(s)	428
PdmI	GAANNNNTTC	2 cut(s)	428, 450
PfeI	GAWTC	3 cut(s)	128, 384, 466
PkrI	GCNGC	3 cut(s)	160, 565, 1072
PleI	GAGTC	1 cut(s)	1061
PpsI	GAGTC	1 cut(s)	1061
PsiI	TTATAA	2 cut(s)	278, 312
Psp124BI	GAGCTC	1 cut(s)	876
Psp6I	CCWGG	1 cut(s)	495
PspEI	GGTNACC	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	1044
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	6 cut(s)	181, 625, 681, 820, 835, 943
PspPI	GGNCC	1 cut(s)	179
PstNI	CAGNNNCTG	1 cut(s)	1070
PsuI	RGATCY	1 cut(s)	302
RsaI	GTAC	4 cut(s)	15, 625, 669, 913
RsaNI	GTAC	4 cut(s)	14, 624, 668, 912
RseI	CAYNNNNRTG	3 cut(s)	742, 845, 936
SacI	GAGCTC	1 cut(s)	876
SaqAI	TTAA	2 cut(s)	44, 672
SatI	GCNGC	3 cut(s)	159, 564, 1071
Sau3AI	GATC	2 cut(s)	302, 987
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	1062
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	876, 946
SfaNI	GCATC	3 cut(s)	350, 734, 892
SfcI	CTRYAG	1 cut(s)	222
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	1 cut(s)	179
SmiMI	CAYNNNNRTG	3 cut(s)	742, 845, 936
SmlI	CTYRAG	4 cut(s)	255, 600, 869, 960
SmoI	CTYRAG	4 cut(s)	255, 600, 869, 960
Sse9I	AATT	9 cut(s)	21, 101, 111, 118, 297, 556, 615, 750, 949
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	4 cut(s)	251, 263, 338, 813
SstI	GAGCTC	1 cut(s)	876
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	61, 349, 1157
TaqI	TCGA	4 cut(s)	105, 131, 464, 732
TasI	AATT	9 cut(s)	21, 101, 111, 118, 297, 556, 615, 750, 949
TfiI	GAWTC	3 cut(s)	128, 384, 466
Tru1I	TTAA	2 cut(s)	44, 672
Tru9I	TTAA	2 cut(s)	44, 672
TscAI	CASTG	4 cut(s)	66, 352, 385, 690
TseFI	GTSAC	5 cut(s)	86, 376, 1003, 1022, 1145
TseI	GCWGC	3 cut(s)	158, 563, 1070
Tsp45I	GTSAC	5 cut(s)	86, 376, 1003, 1022, 1145
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	4 cut(s)	66, 352, 385, 690
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	3 cut(s)	21, 101, 111
XmnI	GAANNNNTTC	2 cut(s)	428, 450
XspI	CTAG	4 cut(s)	251, 263, 338, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.