FvH4_7g16090

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017711
Physical Location & Seq
Forward (+)
13835419 .. 13836858
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16090.t1

Sequence Viewer

Length: 1440 bp
ATGGAAAACAACCACAAAGCATCATCATCATCACCCAACATAGTTATGATACCTAGTCCAGGCATGGGGCACCTTATCCCCCTTGTAGAGCTTGCCAAGCTTCTAGTCCACCACCACAACTTCACCATCACTTTCATTATTCCCACCATTGGACCTCCCCCAAAACCCCAGGAAAACCTCCTCCAAAGCCTTCCAACTTCCATAAACCACTTCTTTCTCCCTCCTATTGATTTCCATGACCTCCCACCAGAAACCAAAACCGAAACTAAAATAACCCTTGCTGTCACTCGCTCCCTTCCCAAAATTCGTAACGTTTTCGAGTCCTTGGTTGCGAATTCTAGTGTAGTTGGCTTAGTGGTTGATTTATTTGGCACTGATGCATTTGATGTTGCCAAGGAGTTCAATGTCCCATCATATTTGTTCTGGTCCTCCATGGCTATGGGTCTGATTTTGTTGCTTCATTTGCCTAAGCTTGACAAAATGGTTTCGTGTGAATACAAAGACATGGATGAGCCGGTGAAGTTACCAGGGTGCTTTCCAATTTCTGGAGCTGAATTTCCGGAGCCATTACAAGACAGGAAGAGTGAAGCATACAAATGGTTTCTTCAATACGGCAAAAGGGTTGATTTAGCTGAGGGTGTTCTACTTAATAGCTTCATGGAATTGGAGCCAGATGCTATAAAAACTTTGCAAGATGAAATTGGGCTTTGTGGGCCACCAGTTTACCCAGTTGGGCCGATTATCCAGACCGGTCCATCTTATGGGCCGGGTGGGCATGAGTGTTTGAAATGGTTAGATGAACAGGCAAGGGGATCTGTTTTGTTTGTGTCATTTGGGAGTGGTGGAACTCTTTCATTTGAACAGCTTAATGCACTAGCATCAGGGCTTGAAATGAGTGGAACAAAGTTCTTGTGGGTTGTGAGAAGTCCTGATAACAAAGCTTCTAATGCAGCATTTTTCAGTGTCCAAAGCCAAACAGATCCTTTAGGGTTTTTACCAAAGGGGTTTACGGAGAGGACTAGATCATTAGGTCGAGGTCTATTGGTGCCATCATGGGCGCCACAGAGTGAGGTCCTCAGCCATGGTTCGATAGGTGGGTTCTTGAGTCATTGTGGATGGAATTCAATCCTCGAGAGCATTGCCAATGGAGTCCCTCTCATTGCTTGGCCTTTGTACGCAGAGCAAAAGATGAACGCAAATGTATTGTGCGAGGGTTTGAAGGTGGCGCTGAGACCGAAAGCGAATGAAAATGGCATGGTGGGATGTGAAGAGATTTGTAGAGTTGTGAAGGAACTAATGGAAGGGGAAGAAGGGTTTAGGGTTCGAGAGAGGATGAATGGATGGAAGAAAGCTGCTAATAAGGCCTTGAGTGAAGAGGGTTCTTCCATAAAGGCATTGTCAGAGTTGGTGATGAAGTTGAAGAAACAGGCATGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

480

Amino Acids

52.61

Weight (kDa)

5.94

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 402 1.3e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16090
prunus_persica Prupe.2G184700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359041
rosa_laevigata RLG00000027906
rosa_multiflora Rmu_co8449533.1_g000001 Rmu_sc0001842.1_g000003
rosa_roxburghii Rroxscaffold_4G00297440
rosa_samantha Rh1AG280700 Rh1BG247700 Rh1CG264900 Rh1DG276000
rosa_wichuraiana Rw1G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 69, 1045, 1057
AccB7I CCANNNNNTGG 2 cut(s) 545, 761
AccIII TCCGGA 1 cut(s) 559
AclI AACGTT 1 cut(s) 312
AclWI GGATC 2 cut(s) 820, 974
AcsI RAATTY 4 cut(s) 303, 334, 554, 1120
AcyI GRCGYC 1 cut(s) 1058
AdeI CACNNNGTG 1 cut(s) 1067
AfaI GTAC 1 cut(s) 1175
AfiI CCNNNNNNNGG 5 cut(s) 59, 65, 149, 545, 761
AgeI ACCGGT 1 cut(s) 749
AgsI TTSAA 8 cut(s) 403, 608, 787, 860, 890, 1125, 1219, 1420
AjnI CCWGG 3 cut(s) 58, 168, 526
AluBI AGCT 9 cut(s) 91, 100, 472, 551, 632, 654, 865, 941, 1352
AluI AGCT 9 cut(s) 91, 100, 472, 551, 632, 654, 865, 941, 1352
Alw26I GTCTC 1 cut(s) 1225
AlwI GGATC 2 cut(s) 820, 974
Ama87I CYCGRG 1 cut(s) 1130
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 5 cut(s) 713, 734, 764, 1166, 1362
ApeKI GCWGC 2 cut(s) 950, 1352
ApoI RAATTY 4 cut(s) 303, 334, 554, 1120
AsiGI ACCGGT 1 cut(s) 749
Asp700I GAANNNNTTC 1 cut(s) 850
AspLEI GCGC 2 cut(s) 1060, 1228
AspS9I GGNCC 7 cut(s) 152, 426, 713, 734, 752, 764, 1072
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 4 cut(s) 24, 115, 529, 1420
AvaI CYCGRG 1 cut(s) 1130
AvaII GGWCC 4 cut(s) 152, 426, 752, 1072
BaeGI GKGCMC 1 cut(s) 72
BanI GGYRCC 3 cut(s) 69, 1045, 1057
BbvCI CCTCAGC 2 cut(s) 633, 1076
BbvI GCAGC 2 cut(s) 962, 1339
BccI CCATC 6 cut(s) 134, 418, 763, 1057, 1110, 1335
BceAI ACGGC 1 cut(s) 628
BcgI CGANNNNNNTGC 2 cut(s) 1121, 1155
BciT130I CCWGG 3 cut(s) 60, 170, 528
BcnI CCSGG 1 cut(s) 768
BcoDI GTCTC 1 cut(s) 1225
BfaI CTAG 5 cut(s) 54, 104, 339, 875, 1020
BfoI RGCGCY 2 cut(s) 1061, 1229
BglI GCCNNNNNGGC 1 cut(s) 772
BisI GCNGC 2 cut(s) 951, 1353
BlsI GCNGC 2 cut(s) 952, 1354
Bme1390I CCNGG 4 cut(s) 60, 170, 528, 768
Bme18I GGWCC 4 cut(s) 152, 426, 752, 1072
BmeT110I CYCGRG 1 cut(s) 1130
BmgT120I GGNCC 7 cut(s) 152, 426, 713, 734, 752, 764, 1072
BmiI GGNNCC 5 cut(s) 71, 564, 669, 1047, 1059
BmrFI CCNGG 4 cut(s) 60, 170, 528, 768
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 4 cut(s) 29, 367, 664, 887
BmuI ACTGGG 1 cut(s) 722
BplI GAGNNNNNCTC 2 cut(s) 1140, 1172
BpmI CTGGAG 1 cut(s) 567
Bpu10I CCTNAGC 3 cut(s) 468, 633, 1076
BpuEI CTTGAG 2 cut(s) 1123, 1387
BpuMI CCSGG 1 cut(s) 768
BsaHI GRCGYC 1 cut(s) 1058
BsaI GGTCTC 1 cut(s) 1225
BsaJI CCNNGG 6 cut(s) 168, 324, 393, 432, 527, 1081
BsaWI WCCGGW 2 cut(s) 559, 749
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 65, 149, 545, 761
Bse118I RCCGGY 2 cut(s) 514, 749
Bse1I ACTGG 2 cut(s) 719, 728
Bse3DI GCAATG 2 cut(s) 1137, 1158
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 3 cut(s) 60, 170, 528
BseDI CCNNGG 6 cut(s) 168, 324, 393, 432, 527, 1081
BseGI GGATG 5 cut(s) 514, 1121, 1268, 1338, 1346
BseLI CCNNNNNNNGG 5 cut(s) 59, 65, 149, 545, 761
BseMI GCAATG 2 cut(s) 1137, 1158
BseMII CTCAG 3 cut(s) 624, 1090, 1220
BseNI ACTGG 2 cut(s) 719, 728
BseRI GAGGAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 2 cut(s) 962, 1339
BshFI GGCC 5 cut(s) 715, 736, 766, 1168, 1364
BshNI GGYRCC 3 cut(s) 69, 1045, 1057
BshTI ACCGGT 1 cut(s) 749
BsiHKCI CYCGRG 1 cut(s) 1130
BsiSI CCGG 4 cut(s) 515, 560, 750, 767
BslFI GGGAC 2 cut(s) 392, 1136
BslI CCNNNNNNNGG 5 cut(s) 59, 65, 149, 545, 761
BsmAI GTCTC 1 cut(s) 1225
BsmFI GGGAC 2 cut(s) 392, 1136
BsnI GGCC 5 cut(s) 715, 736, 766, 1168, 1364
Bso31I GGTCTC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 1130
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 3 cut(s) 812, 979, 1022
Bsp19I CCATGG 2 cut(s) 432, 1081
BspANI GGCC 5 cut(s) 715, 736, 766, 1168, 1364
BspCNI CTCAG 3 cut(s) 625, 1089, 1221
BspEI TCCGGA 1 cut(s) 559
BspLI GGNNCC 5 cut(s) 71, 564, 669, 1047, 1059
BspPI GGATC 2 cut(s) 820, 974
BspT107I GGYRCC 3 cut(s) 69, 1045, 1057
BspTNI GGTCTC 1 cut(s) 1225
BsrDI GCAATG 2 cut(s) 1137, 1158
BsrFI RCCGGY 2 cut(s) 514, 749
BsrI ACTGG 2 cut(s) 719, 728
BssAI RCCGGY 2 cut(s) 514, 749
BssECI CCNNGG 6 cut(s) 168, 324, 393, 432, 527, 1081
BssMI GATC 3 cut(s) 812, 979, 1022
BssNI GRCGYC 1 cut(s) 1058
BssT1I CCWWGG 4 cut(s) 324, 393, 432, 1081
Bst2UI CCWGG 3 cut(s) 60, 170, 528
Bst6I CTCTTC 3 cut(s) 575, 1263, 1368
BstACI GRCGYC 1 cut(s) 1058
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 5 cut(s) 352, 468, 633, 1076, 1229
BstDSI CCRYGG 2 cut(s) 432, 1081
BstENI CCTNNNNNAGG 1 cut(s) 57
BstF5I GGATG 5 cut(s) 514, 1121, 1268, 1338, 1346
BstH2I RGCGCY 2 cut(s) 1061, 1229
BstHHI GCGC 2 cut(s) 1060, 1228
BstKTI GATC 3 cut(s) 815, 982, 1025
BstMAI GTCTC 1 cut(s) 1225
BstMBI GATC 3 cut(s) 812, 979, 1022
BstMWI GCNNNNNNNGC 6 cut(s) 97, 463, 712, 772, 947, 1361
BstNI CCWGG 3 cut(s) 60, 170, 528
BstSCI CCNGG 4 cut(s) 58, 168, 526, 766
BstSLI GKGCMC 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 962, 1339
BstX2I RGATCY 2 cut(s) 812, 979
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 2 cut(s) 812, 979
BsuRI GGCC 5 cut(s) 715, 736, 766, 1168, 1364
BtgI CCRYGG 2 cut(s) 432, 1081
BtsCI GGATG 5 cut(s) 514, 1121, 1268, 1338, 1346
BtsIMutI CAGTG 2 cut(s) 372, 967
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 2 cut(s) 1060, 1228
Cfr10I RCCGGY 2 cut(s) 514, 749
Cfr13I GGNCC 7 cut(s) 152, 426, 713, 734, 752, 764, 1072
Csp6I GTAC 1 cut(s) 1174
CspAI ACCGGT 1 cut(s) 749
CviQI GTAC 1 cut(s) 1174
DdeI CTNAG 5 cut(s) 352, 468, 633, 1076, 1229
DinI GGCGCC 1 cut(s) 1059
DpnI GATC 3 cut(s) 814, 981, 1024
DpnII GATC 3 cut(s) 812, 979, 1022
DraIII CACNNNGTG 1 cut(s) 1067
Eam1104I CTCTTC 3 cut(s) 575, 1263, 1368
EarI CTCTTC 3 cut(s) 575, 1263, 1368
Eco130I CCWWGG 4 cut(s) 324, 393, 432, 1081
Eco147I AGGCCT 1 cut(s) 1364
Eco31I GGTCTC 1 cut(s) 1225
Eco47I GGWCC 4 cut(s) 152, 426, 752, 1072
Eco88I CYCGRG 1 cut(s) 1130
EcoNI CCTNNNNNAGG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 1072
EcoRI GAATTC 2 cut(s) 334, 1120
EcoRII CCWGG 3 cut(s) 58, 168, 526
EcoT14I CCWWGG 4 cut(s) 324, 393, 432, 1081
EcoT22I ATGCAT 1 cut(s) 382
EgeI GGCGCC 1 cut(s) 1059
EheI GGCGCC 1 cut(s) 1059
ErhI CCWWGG 4 cut(s) 324, 393, 432, 1081
FaqI GGGAC 2 cut(s) 392, 1136
Fnu4HI GCNGC 2 cut(s) 951, 1353
FokI GGATG 5 cut(s) 521, 1128, 1275, 1345, 1353
Fsp4HI GCNGC 2 cut(s) 951, 1353
FspBI CTAG 5 cut(s) 54, 104, 339, 875, 1020
GlaI GCGC 2 cut(s) 1059, 1227
GluI GCNGC 2 cut(s) 951, 1353
GsuI CTGGAG 1 cut(s) 567
HaeII RGCGCY 2 cut(s) 1061, 1229
HaeIII GGCC 5 cut(s) 715, 736, 766, 1168, 1364
HapII CCGG 4 cut(s) 515, 560, 750, 767
HhaI GCGC 2 cut(s) 1060, 1228
Hin1I GRCGYC 1 cut(s) 1058
Hin6I GCGC 2 cut(s) 1058, 1226
HinP1I GCGC 2 cut(s) 1058, 1226
HindIII AAGCTT 3 cut(s) 98, 470, 939
HinfI GANTC 3 cut(s) 320, 1105, 1149
HpaII CCGG 4 cut(s) 515, 560, 750, 767
HphI GGTGA 4 cut(s) 24, 115, 529, 1420
Hpy166II GTNNAC 3 cut(s) 109, 724, 1008
Hpy188I TCNGA 2 cut(s) 447, 1402
Hpy188III TCNNGA 7 cut(s) 546, 560, 745, 929, 1102, 1132, 1325
Hpy8I GTNNAC 3 cut(s) 109, 724, 1008
HpyAV CCTTC 6 cut(s) 200, 305, 1213, 1282, 1295, 1304
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 380, 691, 872, 950
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 463, 712, 772, 947, 1361
HpyF3I CTNAG 5 cut(s) 352, 468, 633, 1076, 1229
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 1058
HspAI GCGC 2 cut(s) 1058, 1226
KasI GGCGCC 1 cut(s) 1057
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 812, 979, 1022
LmnI GCTCC 4 cut(s) 296, 548, 562, 667
Lsp1109I GCAGC 2 cut(s) 962, 1339
LweI GCATC 4 cut(s) 29, 367, 664, 887
MaeI CTAG 5 cut(s) 54, 104, 339, 875, 1020
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 3 cut(s) 283, 308, 522
MalI GATC 3 cut(s) 814, 981, 1024
MboI GATC 3 cut(s) 812, 979, 1022
MboII GAAGA 8 cut(s) 592, 596, 1280, 1319, 1357, 1374, 1385, 1432
MflI RGATCY 2 cut(s) 812, 979
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 8 cut(s) 303, 334, 540, 554, 662, 699, 1120, 1435
Mly113I GGCGCC 1 cut(s) 1058
MlyI GAGTC 3 cut(s) 329, 1114, 1158
MmeI TCCRAC 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 382
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 850
MseI TTAA 2 cut(s) 648, 867
MslI CAYNNNNRTG 3 cut(s) 44, 437, 595
MspI CCGG 4 cut(s) 515, 560, 750, 767
MspR9I CCNGG 4 cut(s) 60, 170, 528, 768
MvaI CCWGG 3 cut(s) 60, 170, 528
MwoI GCNNNNNNNGC 6 cut(s) 97, 463, 712, 772, 947, 1361
NarI GGCGCC 1 cut(s) 1058
NciI CCSGG 1 cut(s) 768
NcoI CCATGG 2 cut(s) 432, 1081
NdeII GATC 3 cut(s) 812, 979, 1022
NlaIV GGNNCC 5 cut(s) 71, 564, 669, 1047, 1059
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 1130
PceI AGGCCT 1 cut(s) 1364
PdmI GAANNNNTTC 1 cut(s) 850
PflMI CCANNNNNTGG 2 cut(s) 545, 761
PinAI ACCGGT 1 cut(s) 749
PkrI GCNGC 2 cut(s) 952, 1354
PleI GAGTC 3 cut(s) 328, 1113, 1157
PluTI GGCGCC 1 cut(s) 1061
PpsI GAGTC 3 cut(s) 328, 1113, 1157
PpuMI RGGWCCY 1 cut(s) 1072
Psp1406I AACGTT 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 3 cut(s) 58, 168, 526
PspGI CCWGG 3 cut(s) 58, 168, 526
PspN4I GGNNCC 5 cut(s) 71, 564, 669, 1047, 1059
PspPI GGNCC 7 cut(s) 152, 426, 713, 734, 752, 764, 1072
PspPPI RGGWCCY 1 cut(s) 1072
PsuI RGATCY 2 cut(s) 812, 979
RsaI GTAC 1 cut(s) 1175
RsaNI GTAC 1 cut(s) 1174
RseI CAYNNNNRTG 3 cut(s) 44, 437, 595
SaqAI TTAA 2 cut(s) 648, 867
SatI GCNGC 2 cut(s) 951, 1353
Sau3AI GATC 3 cut(s) 812, 979, 1022
Sau96I GGNCC 7 cut(s) 152, 426, 713, 734, 752, 764, 1072
SchI GAGTC 3 cut(s) 329, 1114, 1158
ScrFI CCNGG 4 cut(s) 60, 170, 528, 768
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 4 cut(s) 29, 367, 664, 887
SfoI GGCGCC 1 cut(s) 1059
Sfr274I CTCGAG 1 cut(s) 1130
SinI GGWCC 4 cut(s) 152, 426, 752, 1072
SlaI CTCGAG 1 cut(s) 1130
SmiMI CAYNNNNRTG 3 cut(s) 44, 437, 595
SmlI CTYRAG 3 cut(s) 1102, 1130, 1366
SmoI CTYRAG 3 cut(s) 1102, 1130, 1366
Sse9I AATT 8 cut(s) 303, 334, 540, 554, 662, 699, 1120, 1435
SseBI AGGCCT 1 cut(s) 1364
SspDI GGCGCC 1 cut(s) 1057
SspMI CTAG 5 cut(s) 54, 104, 339, 875, 1020
StuI AGGCCT 1 cut(s) 1364
StyD4I CCNGG 4 cut(s) 58, 168, 526, 766
StyI CCWWGG 4 cut(s) 324, 393, 432, 1081
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 318, 1033, 1088, 1131, 1324
TaqII GACCGA 1 cut(s) 1249
TasI AATT 8 cut(s) 303, 334, 540, 554, 662, 699, 1120, 1435
Tru1I TTAA 2 cut(s) 648, 867
Tru9I TTAA 2 cut(s) 648, 867
TscAI CASTG 2 cut(s) 379, 967
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 2 cut(s) 950, 1352
Tsp45I GTSAC 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 1025
TspRI CASTG 2 cut(s) 379, 967
Van91I CCANNNNNTGG 2 cut(s) 545, 761
VpaK11BI GGWCC 4 cut(s) 152, 426, 752, 1072
XagI CCTNNNNNAGG 1 cut(s) 57
XapI RAATTY 4 cut(s) 303, 334, 554, 1120
XhoI CTCGAG 1 cut(s) 1130
XmnI GAANNNNTTC 1 cut(s) 850
XspI CTAG 5 cut(s) 54, 104, 339, 875, 1020
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.