Rmu_sc0001842.1_g000003

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001842.1
OG0017711
Physical Location & Seq
Forward (+)
6121 .. 7545
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001842.1_g000003.1.cds

Sequence Viewer

Length: 1425 bp
atggaaaacaaccgcaaagcatcatcaccccacattgttatgatacccagtccaggcatgggtcaccttatcccacttgtagagcttgcaaagcttctagtccaccaccataacttcaccatcactctcattattcccaccattggacctcccccaaaaccggagaaaaccctcctccaaaccctcccaaattccataaactacttctttctccctcctattgatttccatgacctccccccagaaaccaaaacccaaactaaaataaccctttctgtcactcgctccctttccgaaatacgcaacgttttcaaatccttggctgcaagttccagtctagttgggttagtggttgatatgtttggtactgatgcattttatgttgccaaggatttcaatgtcccatcatatttgttctggtccaccatggctattggtttgattttgttgcttcatttgcctaagcttgacaaaatgtttgcttgtgaatacaaagacttagctgagcctgtgaaattaccagggtgcattccaatttccggagctgaatttccagaaccatttcaagacagaaagagtgaagcatacaaatggtttcttcaatatggcaaaaggtttgatttagctaagggtgttatagtgaatagcttcatggaactggagccagatgctatacaagcctggcaagatgaaattgggcttcgtgggccaccaatttatccaattgggccaattgtccagaccggtccatcttatgggcctgatgggcatgagtgtttgaaatggttggatgaacatccaagggggtctgttctgtttgtgtcatttgggagtggtggaactctctcgtttgaacagcttaatgaactagcattagggcttgaaatgagtggaacaaagtttttgtgggttgtcagaagtccagataacaaagcttctgatgcatcgtttttcagtgtccaaagccaaacagatcctctagggtttttaccaaaggggtttaaggagaggaccaaattaggtcgaggtcttttggtgccatcatgggcgccacaaagtgaggtacttagccatggttcgataggtgggttcttgagtcactgtggatggaattcaatcctcgagagcattgtcaacggtgtccctctcattgcttggcctttatatgcagagcaaaagatgaatgcaaatgtgttgtgcgaagcttggaaggtggctctgagacctaaagcgaatgaaaatggcatagtgggatgtgatgagatcggtagagttgtgaaggaactaatggaaggggaagaaggatttagggttcgacagaggatgaatggatggaaggaagctgctaataaggcattgagtgtagagggttcttccagaaaggcattgtctgagttggcgatgaagttgaagaagcataaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

474

Amino Acids

52.51

Weight (kDa)

7.19

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16090
prunus_persica Prupe.2G184700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359041
rosa_laevigata RLG00000027906
rosa_multiflora Rmu_co8449533.1_g000001 Rmu_sc0001842.1_g000003
rosa_roxburghii Rroxscaffold_4G00297440
rosa_samantha Rh1AG280700 Rh1BG247700 Rh1CG264900 Rh1DG276000
rosa_wichuraiana Rw1G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1036, 1048
AccB7I CCANNNNNTGG 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 539
AciI CCGC 1 cut(s) 13
AclI AACGTT 1 cut(s) 306
AclWI GGATC 1 cut(s) 968
AcsI RAATTY 3 cut(s) 190, 548, 1111
AcyI GRCGYC 1 cut(s) 1049
AdeI CACNNNGTG 1 cut(s) 1058
AfaI GTAC 2 cut(s) 367, 1065
AfiI CCNNNNNNNGG 6 cut(s) 53, 59, 143, 160, 539, 755
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 9 cut(s) 313, 397, 566, 602, 781, 854, 884, 1116, 1411
AjnI CCWGG 3 cut(s) 52, 520, 680
AloI GAACNNNNNNTCC 2 cut(s) 1296, 1328
Alw26I GTCTC 1 cut(s) 1216
AlwI GGATC 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 1121
Aor13HI TCCGGA 1 cut(s) 539
AoxI GGCC 4 cut(s) 707, 728, 758, 1157
ApeKI GCWGC 2 cut(s) 323, 1343
ApoI RAATTY 3 cut(s) 190, 548, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AsiGI ACCGGT 1 cut(s) 743
Asp700I GAANNNNTTC 2 cut(s) 561, 647
AspLEI GCGC 1 cut(s) 1051
AspS9I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
AsuHPI GGTGA 3 cut(s) 18, 56, 109
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 4 cut(s) 146, 420, 746, 1011
BanI GGYRCC 2 cut(s) 1036, 1048
BbvI GCAGC 2 cut(s) 310, 1330
BccI CCATC 7 cut(s) 128, 412, 757, 758, 1048, 1101, 1326
BciT130I CCWGG 3 cut(s) 54, 522, 682
BcoDI GTCTC 1 cut(s) 1216
BfaI CTAG 4 cut(s) 98, 338, 869, 980
BfoI RGCGCY 1 cut(s) 1052
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 2 cut(s) 324, 1344
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 2 cut(s) 325, 1345
Bme1390I CCNGG 3 cut(s) 54, 522, 682
Bme18I GGWCC 4 cut(s) 146, 420, 746, 1011
BmeT110I CYCGRG 1 cut(s) 1121
BmgT120I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
BmiI GGNNCC 3 cut(s) 663, 1038, 1050
BmrFI CCNGG 3 cut(s) 54, 522, 682
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 5 cut(s) 29, 361, 658, 931, 953
BmuI ACTGGG 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 2 cut(s) 462, 627
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 1114
BsaBI GATNNNNATC 1 cut(s) 795
BsaHI GRCGYC 1 cut(s) 1049
BsaI GGTCTC 1 cut(s) 1216
BsaJI CCNNGG 6 cut(s) 318, 387, 426, 521, 800, 1072
BsaWI WCCGGW 3 cut(s) 160, 539, 743
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 59, 143, 160, 539, 755
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 48, 333, 663
Bse3DI GCAATG 1 cut(s) 1149
Bse8I GATNNNNATC 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 539
BseBI CCWGG 3 cut(s) 54, 522, 682
BseDI CCNNGG 6 cut(s) 318, 387, 426, 521, 800, 1072
BseGI GGATG 6 cut(s) 796, 796, 1112, 1259, 1329, 1337
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 6 cut(s) 53, 59, 143, 160, 539, 755
BseMI GCAATG 1 cut(s) 1149
BseMII CTCAG 3 cut(s) 495, 1211, 1383
BseNI ACTGG 3 cut(s) 48, 333, 663
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 310, 1330
BshFI GGCC 4 cut(s) 709, 730, 760, 1159
BshNI GGYRCC 2 cut(s) 1036, 1048
BshTI ACCGGT 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 3 cut(s) 161, 540, 744
BslFI GGGAC 2 cut(s) 386, 1127
BslI CCNNNNNNNGG 6 cut(s) 53, 59, 143, 160, 539, 755
BsmAI GTCTC 1 cut(s) 1216
BsmFI GGGAC 2 cut(s) 386, 1127
BsmI GAATGC 2 cut(s) 528, 1189
BsnI GGCC 4 cut(s) 709, 730, 760, 1159
Bso31I GGTCTC 1 cut(s) 1216
BsoBI CYCGRG 1 cut(s) 1121
Bsp13I TCCGGA 1 cut(s) 539
Bsp143I GATC 2 cut(s) 973, 1263
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 2 cut(s) 426, 1072
BspACI CCGC 1 cut(s) 13
BspANI GGCC 4 cut(s) 709, 730, 760, 1159
BspCNI CTCAG 3 cut(s) 496, 1212, 1384
BspEI TCCGGA 1 cut(s) 539
BspLI GGNNCC 3 cut(s) 663, 1038, 1050
BspPI GGATC 1 cut(s) 968
BspT107I GGYRCC 2 cut(s) 1036, 1048
BspTNI GGTCTC 1 cut(s) 1216
BsrDI GCAATG 1 cut(s) 1149
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 3 cut(s) 48, 333, 663
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 6 cut(s) 318, 387, 426, 521, 800, 1072
BssMI GATC 2 cut(s) 973, 1263
BssNI GRCGYC 1 cut(s) 1049
BssT1I CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
Bst2UI CCWGG 3 cut(s) 54, 522, 682
Bst4CI ACNGT 2 cut(s) 1103, 1139
BstACI GRCGYC 1 cut(s) 1049
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 7 cut(s) 462, 499, 504, 627, 1067, 1220, 1392
BstDSI CCRYGG 2 cut(s) 426, 1072
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 6 cut(s) 796, 796, 1112, 1259, 1329, 1337
BstH2I RGCGCY 1 cut(s) 1052
BstHHI GCGC 1 cut(s) 1051
BstKTI GATC 2 cut(s) 976, 1266
BstMAI GTCTC 1 cut(s) 1216
BstMBI GATC 2 cut(s) 973, 1263
BstMWI GCNNNNNNNGC 7 cut(s) 91, 457, 677, 706, 766, 941, 1352
BstNI CCWGG 3 cut(s) 54, 522, 682
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 3 cut(s) 52, 520, 680
BstV1I GCAGC 2 cut(s) 310, 1330
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 4 cut(s) 709, 730, 760, 1159
BtgI CCRYGG 2 cut(s) 426, 1072
BtgZI GCGATG 1 cut(s) 1415
BtsCI GGATG 6 cut(s) 796, 796, 1112, 1259, 1329, 1337
BtsIMutI CAGTG 2 cut(s) 961, 1099
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 1051
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
Csp6I GTAC 2 cut(s) 366, 1064
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 7 cut(s) 58, 230, 427, 652, 770, 1044, 1073
CviQI GTAC 2 cut(s) 366, 1064
DdeI CTNAG 7 cut(s) 462, 499, 504, 627, 1067, 1220, 1392
DinI GGCGCC 1 cut(s) 1050
DpnI GATC 2 cut(s) 975, 1265
DpnII GATC 2 cut(s) 973, 1263
DraIII CACNNNGTG 1 cut(s) 1058
Eco130I CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
Eco31I GGTCTC 1 cut(s) 1216
Eco47I GGWCC 4 cut(s) 146, 420, 746, 1011
Eco88I CYCGRG 1 cut(s) 1121
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 1111
EcoRII CCWGG 3 cut(s) 52, 520, 680
EcoT14I CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
EcoT22I ATGCAT 2 cut(s) 376, 946
EgeI GGCGCC 1 cut(s) 1050
EheI GGCGCC 1 cut(s) 1050
ErhI CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
FaeI CATG 7 cut(s) 61, 233, 430, 655, 773, 1047, 1076
FaqI GGGAC 2 cut(s) 386, 1127
FatI CATG 7 cut(s) 57, 229, 426, 651, 769, 1043, 1072
Fnu4HI GCNGC 2 cut(s) 324, 1344
FokI GGATG 6 cut(s) 783, 803, 1119, 1266, 1336, 1344
Fsp4HI GCNGC 2 cut(s) 324, 1344
FspBI CTAG 4 cut(s) 98, 338, 869, 980
GlaI GCGC 1 cut(s) 1050
GluI GCNGC 2 cut(s) 324, 1344
GsuI CTGGAG 1 cut(s) 680
HaeII RGCGCY 1 cut(s) 1052
HaeIII GGCC 4 cut(s) 709, 730, 760, 1159
HapII CCGG 3 cut(s) 161, 540, 744
HhaI GCGC 1 cut(s) 1051
Hin1I GRCGYC 1 cut(s) 1049
Hin1II CATG 7 cut(s) 61, 233, 430, 655, 773, 1047, 1076
Hin6I GCGC 1 cut(s) 1049
HinP1I GCGC 1 cut(s) 1049
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 4 cut(s) 92, 464, 933, 1203
HinfI GANTC 1 cut(s) 1096
HpaII CCGG 3 cut(s) 161, 540, 744
HphI GGTGA 3 cut(s) 18, 56, 109
Hpy166II GTNNAC 3 cut(s) 103, 423, 1135
Hpy188I TCNGA 5 cut(s) 295, 917, 940, 1221, 1393
Hpy188III TCNNGA 8 cut(s) 540, 554, 566, 739, 923, 1093, 1123, 1377
Hpy8I GTNNAC 3 cut(s) 103, 423, 1135
HpyAV CCTTC 5 cut(s) 1204, 1273, 1286, 1295, 1330
HpyCH4III ACNGT 2 cut(s) 1103, 1139
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 7 cut(s) 89, 326, 374, 528, 944, 1169, 1187
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 457, 677, 706, 766, 941, 1352
HpyF3I CTNAG 7 cut(s) 462, 499, 504, 627, 1067, 1220, 1392
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 1049
Hsp92II CATG 7 cut(s) 61, 233, 430, 655, 773, 1047, 1076
HspAI GCGC 1 cut(s) 1049
KasI GGCGCC 1 cut(s) 1048
Kpn2I TCCGGA 1 cut(s) 539
Kzo9I GATC 2 cut(s) 973, 1263
LmnI GCTCC 3 cut(s) 290, 542, 661
Lsp1109I GCAGC 2 cut(s) 310, 1330
LweI GCATC 5 cut(s) 29, 361, 658, 931, 953
MaeI CTAG 4 cut(s) 98, 338, 869, 980
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 62, 277, 1097
MalI GATC 2 cut(s) 975, 1265
MboI GATC 2 cut(s) 973, 1263
MboII GAAGA 4 cut(s) 590, 1310, 1365, 1423
MfeI CAATTG 2 cut(s) 723, 732
MflI RGATCY 1 cut(s) 973
Mly113I GGCGCC 1 cut(s) 1049
MlyI GAGTC 1 cut(s) 1105
MmeI TCCRAC 1 cut(s) 768
Mph1103I ATGCAT 2 cut(s) 376, 946
MroI TCCGGA 1 cut(s) 539
MroXI GAANNNNTTC 2 cut(s) 561, 647
MseI TTAA 2 cut(s) 861, 1002
MslI CAYNNNNRTG 2 cut(s) 38, 589
MspI CCGG 3 cut(s) 161, 540, 744
MspR9I CCNGG 3 cut(s) 54, 522, 682
MunI CAATTG 2 cut(s) 723, 732
Mva1269I GAATGC 2 cut(s) 528, 1189
MvaI CCWGG 3 cut(s) 54, 522, 682
MwoI GCNNNNNNNGC 7 cut(s) 91, 457, 677, 706, 766, 941, 1352
NarI GGCGCC 1 cut(s) 1049
NcoI CCATGG 2 cut(s) 426, 1072
NdeII GATC 2 cut(s) 973, 1263
NlaIII CATG 7 cut(s) 61, 233, 430, 655, 773, 1047, 1076
NlaIV GGNNCC 3 cut(s) 663, 1038, 1050
NmuCI GTSAC 3 cut(s) 62, 277, 1097
NsiI ATGCAT 2 cut(s) 376, 946
PaeR7I CTCGAG 1 cut(s) 1121
PctI GAATGC 2 cut(s) 528, 1189
PdmI GAANNNNTTC 2 cut(s) 561, 647
PflMI CCANNNNNTGG 1 cut(s) 755
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 2 cut(s) 325, 1345
PleI GAGTC 1 cut(s) 1104
PluTI GGCGCC 1 cut(s) 1052
PpsI GAGTC 1 cut(s) 1104
Psp1406I AACGTT 1 cut(s) 306
Psp6I CCWGG 3 cut(s) 52, 520, 680
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 3 cut(s) 52, 520, 680
PspN4I GGNNCC 3 cut(s) 663, 1038, 1050
PspPI GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 2 cut(s) 367, 1065
RsaNI GTAC 2 cut(s) 366, 1064
RseI CAYNNNNRTG 2 cut(s) 38, 589
SaqAI TTAA 2 cut(s) 861, 1002
SatI GCNGC 2 cut(s) 324, 1344
Sau3AI GATC 2 cut(s) 973, 1263
Sau96I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
SchI GAGTC 1 cut(s) 1105
ScrFI CCNGG 3 cut(s) 54, 522, 682
SfaNI GCATC 5 cut(s) 29, 361, 658, 931, 953
SfoI GGCGCC 1 cut(s) 1050
Sfr274I CTCGAG 1 cut(s) 1121
SinI GGWCC 4 cut(s) 146, 420, 746, 1011
SlaI CTCGAG 1 cut(s) 1121
SmiMI CAYNNNNRTG 2 cut(s) 38, 589
SmlI CTYRAG 2 cut(s) 1093, 1121
SmoI CTYRAG 2 cut(s) 1093, 1121
SsiI CCGC 1 cut(s) 13
SspDI GGCGCC 1 cut(s) 1048
SspMI CTAG 4 cut(s) 98, 338, 869, 980
StyD4I CCNGG 3 cut(s) 52, 520, 680
StyI CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
TaaI ACNGT 2 cut(s) 1103, 1139
TaiI ACGT 1 cut(s) 309
TaqI TCGA 4 cut(s) 1024, 1079, 1122, 1315
Tru1I TTAA 2 cut(s) 861, 1002
Tru9I TTAA 2 cut(s) 861, 1002
TscAI CASTG 2 cut(s) 961, 1106
TseFI GTSAC 3 cut(s) 62, 277, 1097
TseI GCWGC 2 cut(s) 323, 1343
Tsp45I GTSAC 3 cut(s) 62, 277, 1097
TspDTI ATGAA 9 cut(s) 443, 640, 705, 807, 879, 1196, 1251, 1340, 1418
TspRI CASTG 2 cut(s) 961, 1106
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 4 cut(s) 146, 420, 746, 1011
XapI RAATTY 3 cut(s) 190, 548, 1111
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 1121
XmnI GAANNNNTTC 2 cut(s) 561, 647
XspI CTAG 4 cut(s) 98, 338, 869, 980
Zsp2I ATGCAT 2 cut(s) 376, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.