Rh1CG264900

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0017711
Physical Location & Seq
Forward (+)
52915491 .. 52916915
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG264900.1

Sequence Viewer

Length: 1281 bp
ATGGAAGACAACCACAAAGCATCATCACCCCACATAGTTATGATACCCAGTCTAGGCATGGGTCACCTTATCCCACTTGTAGAGCTTGCAAAGCTTCTAGTCCACCACCATAACTTCACCATCACTCTCATTATTCCCACCATTGGACCTCCCCCAAAACCGGAGAAAACCCTTCTCCAAACCCTCCCAAATTCCATAAACTACTTCTTTCTCCCTCCTATTGATTTCCATGACCTCCCCCCAGAAACCAAAACCCAAACTAAAATAACCCTTTCTGTCACTCGCTCCCTTTCCGAAATACGCAACTTTTTCAAATCCTTGGCTGCAAGTTCCAGTCTAGTTGGGTTAGTGGTTGATATGTTTGGTACTGATGCATTTTATGTTGCCAAGGATTTCAATGTCCCATCATATTTGTTCTGGTCCACCATGGCTATTGGTTTGATTTTGTTGCTTCATTTGCCTAAGCTTGACAAAATGGTTGCTTGTGAATACAAAGACTTAGCTGAGCCTGTGAAATTACCAGGGGGCATTCCAATTTCCGGAGCTGAATTTCCAGAGCCATTTCAAGACAGAAAGAGTGAAGCATACAAATGGTTTCTTCAATATGGCAAAAGGTTTGATTTAGCCGAGGGTGTTATAGTGAATAGCTTCATGGAACTGGAGCCAGATGCTATAAAAGCCTTGCAAGATGAAATTGGGTTTCGTGGGCCACCAGTTCATCCAATTGGGCCGATTGTCCAGACCGGTCCATCTTATGGGCCTGGTGGGCATGAGTGTTTGAAATGGTTGGATGAACAACCAAGGGGGTCTGTTCTGTTTGTGTCATTTGGGAGTGGAGGAACTCTCTCATTTGAACAGCTTAATGAACTAGCATTAGGGCTTGAAATGAGTGGAACAAAGTTTTTGTGGGTTGTGAGAAGTCCAGATAACAAAGCTTCTGATGCATCGTTTTTCAGTGTCCAAAGCCAAACAGATCCTCTAGGGTTTTTACCAAAGGGGTTTAAGGAGAGGACCAAATTAGGTCAAGAGCAAAAGATGAATGCAAATGTGTTGTGCGAAGCTTGGAAGGTGGCTCTGAGACCTAAAGCGAATGAAAATGGCATAGTGGGATGTGATGAGATCGCTAGAGTTGTGAAGGAACTAATGGAAGGGGAAGAAGGATTTAGGGTTCGACAGAGGATGAATGGATGGAAGAAAGCTGCTAATAAGGCATTGAGTGAAGAGGGTTCTTCCAGAAAGGCATTGTCTGAGTTGGCAATGAAGTTGAAGAAGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

426

Amino Acids

47.27

Weight (kDa)

7.18

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16090
prunus_persica Prupe.2G184700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359041
rosa_laevigata RLG00000027906
rosa_multiflora Rmu_co8449533.1_g000001 Rmu_sc0001842.1_g000003
rosa_roxburghii Rroxscaffold_4G00297440
rosa_samantha Rh1AG280700 Rh1BG247700 Rh1CG264900 Rh1DG276000
rosa_wichuraiana Rw1G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 539
AclWI GGATC 1 cut(s) 968
AcsI RAATTY 2 cut(s) 190, 548
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 5 cut(s) 53, 143, 160, 539, 755
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 8 cut(s) 313, 397, 566, 602, 781, 854, 884, 1267
AjnI CCWGG 2 cut(s) 520, 760
AloI GAACNNNNNNTCC 2 cut(s) 1152, 1184
Alw26I GTCTC 1 cut(s) 1072
AlwI GGATC 1 cut(s) 968
Aor13HI TCCGGA 1 cut(s) 539
AoxI GGCC 3 cut(s) 707, 728, 758
ApeKI GCWGC 2 cut(s) 323, 1199
ApoI RAATTY 2 cut(s) 190, 548
AsiGI ACCGGT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 647
AspS9I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
AsuHPI GGTGA 3 cut(s) 18, 56, 109
AvaII GGWCC 4 cut(s) 146, 420, 746, 1011
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 310, 1186
BccI CCATC 4 cut(s) 128, 412, 757, 1182
BciT130I CCWGG 2 cut(s) 522, 762
BcoDI GTCTC 1 cut(s) 1072
BfaI CTAG 6 cut(s) 53, 98, 338, 869, 980, 1125
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 2 cut(s) 324, 1200
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 2 cut(s) 325, 1201
Bme1390I CCNGG 2 cut(s) 522, 762
Bme18I GGWCC 4 cut(s) 146, 420, 746, 1011
BmgT120I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
BmiI GGNNCC 1 cut(s) 663
BmrFI CCNGG 2 cut(s) 522, 762
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 5 cut(s) 29, 361, 658, 931, 953
BmuI ACTGGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 828, 860
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 462
Bpu1102I GCTNAGC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 1072
BsaJI CCNNGG 6 cut(s) 318, 387, 426, 521, 627, 800
BsaWI WCCGGW 3 cut(s) 160, 539, 743
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 143, 160, 539, 755
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 4 cut(s) 48, 333, 663, 713
Bse3DI GCAATG 1 cut(s) 1263
BseAI TCCGGA 1 cut(s) 539
BseBI CCWGG 2 cut(s) 522, 762
BseDI CCNNGG 6 cut(s) 318, 387, 426, 521, 627, 800
BseGI GGATG 5 cut(s) 718, 796, 1115, 1185, 1193
BseLI CCNNNNNNNGG 5 cut(s) 53, 143, 160, 539, 755
BseMI GCAATG 1 cut(s) 1263
BseMII CTCAG 3 cut(s) 495, 1067, 1239
BseNI ACTGG 4 cut(s) 48, 333, 663, 713
BseXI GCAGC 2 cut(s) 310, 1186
BshFI GGCC 3 cut(s) 709, 730, 760
BshTI ACCGGT 1 cut(s) 743
BsiSI CCGG 3 cut(s) 161, 540, 744
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 5 cut(s) 53, 143, 160, 539, 755
BsmAI GTCTC 1 cut(s) 1072
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 2 cut(s) 528, 1045
BsnI GGCC 3 cut(s) 709, 730, 760
Bso31I GGTCTC 1 cut(s) 1072
Bsp13I TCCGGA 1 cut(s) 539
Bsp143I GATC 2 cut(s) 973, 1119
Bsp1720I GCTNAGC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 426
BspANI GGCC 3 cut(s) 709, 730, 760
BspCNI CTCAG 3 cut(s) 496, 1068, 1240
BspEI TCCGGA 1 cut(s) 539
BspLI GGNNCC 1 cut(s) 663
BspPI GGATC 1 cut(s) 968
BspTNI GGTCTC 1 cut(s) 1072
BsrDI GCAATG 1 cut(s) 1263
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 4 cut(s) 48, 333, 663, 713
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 6 cut(s) 318, 387, 426, 521, 627, 800
BssMI GATC 2 cut(s) 973, 1119
BssT1I CCWWGG 4 cut(s) 318, 387, 426, 800
Bst2UI CCWGG 2 cut(s) 522, 762
Bst6I CTCTTC 1 cut(s) 1215
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 5 cut(s) 462, 499, 504, 1076, 1248
BstDSI CCRYGG 1 cut(s) 426
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 5 cut(s) 718, 796, 1115, 1185, 1193
BstKTI GATC 2 cut(s) 976, 1122
BstMAI GTCTC 1 cut(s) 1072
BstMBI GATC 2 cut(s) 973, 1119
BstMWI GCNNNNNNNGC 6 cut(s) 91, 457, 677, 766, 941, 1208
BstNI CCWGG 2 cut(s) 522, 762
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 520, 760
BstV1I GCAGC 2 cut(s) 310, 1186
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 3 cut(s) 709, 730, 760
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 5 cut(s) 718, 796, 1115, 1185, 1193
BtsIMutI CAGTG 1 cut(s) 961
Cac8I GCNNGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 743
Cfr13I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
Csp6I GTAC 1 cut(s) 366
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 5 cut(s) 58, 230, 427, 652, 770
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 5 cut(s) 462, 499, 504, 1076, 1248
DpnI GATC 2 cut(s) 975, 1121
DpnII GATC 2 cut(s) 973, 1119
Eam1104I CTCTTC 1 cut(s) 1215
EarI CTCTTC 1 cut(s) 1215
Eco130I CCWWGG 4 cut(s) 318, 387, 426, 800
Eco31I GGTCTC 1 cut(s) 1072
Eco47I GGWCC 4 cut(s) 146, 420, 746, 1011
Eco91I GGTNACC 1 cut(s) 62
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 520, 760
EcoT14I CCWWGG 4 cut(s) 318, 387, 426, 800
EcoT22I ATGCAT 2 cut(s) 376, 946
ErhI CCWWGG 4 cut(s) 318, 387, 426, 800
FaeI CATG 5 cut(s) 61, 233, 430, 655, 773
FaqI GGGAC 1 cut(s) 386
FatI CATG 5 cut(s) 57, 229, 426, 651, 769
Fnu4HI GCNGC 2 cut(s) 324, 1200
FokI GGATG 5 cut(s) 705, 803, 1122, 1192, 1200
Fsp4HI GCNGC 2 cut(s) 324, 1200
FspBI CTAG 6 cut(s) 53, 98, 338, 869, 980, 1125
GluI GCNGC 2 cut(s) 324, 1200
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 3 cut(s) 709, 730, 760
HapII CCGG 3 cut(s) 161, 540, 744
Hin1II CATG 5 cut(s) 61, 233, 430, 655, 773
HindIII AAGCTT 4 cut(s) 92, 464, 933, 1059
HpaII CCGG 3 cut(s) 161, 540, 744
HphI GGTGA 3 cut(s) 18, 56, 109
Hpy166II GTNNAC 2 cut(s) 103, 423
Hpy188I TCNGA 4 cut(s) 295, 940, 1077, 1249
Hpy188III TCNNGA 7 cut(s) 540, 554, 566, 739, 923, 1025, 1233
Hpy8I GTNNAC 2 cut(s) 103, 423
HpyAV CCTTC 5 cut(s) 182, 1060, 1129, 1142, 1151
HpyCH4V TGCA 6 cut(s) 89, 326, 374, 685, 944, 1043
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 457, 677, 766, 941, 1208
HpyF3I CTNAG 5 cut(s) 462, 499, 504, 1076, 1248
Hsp92II CATG 5 cut(s) 61, 233, 430, 655, 773
Kpn2I TCCGGA 1 cut(s) 539
Kzo9I GATC 2 cut(s) 973, 1119
LmnI GCTCC 3 cut(s) 290, 542, 661
Lsp1109I GCAGC 2 cut(s) 310, 1186
LweI GCATC 5 cut(s) 29, 361, 658, 931, 953
MaeI CTAG 6 cut(s) 53, 98, 338, 869, 980, 1125
MaeIII GTNAC 2 cut(s) 62, 277
MalI GATC 2 cut(s) 975, 1121
MboI GATC 2 cut(s) 973, 1119
MboII GAAGA 7 cut(s) 17, 590, 1166, 1204, 1221, 1232, 1279
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 1 cut(s) 973
MluCI AATT 7 cut(s) 190, 515, 534, 548, 693, 723, 1016
MmeI TCCRAC 1 cut(s) 768
Mph1103I ATGCAT 2 cut(s) 376, 946
MroI TCCGGA 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 647
MseI TTAA 2 cut(s) 861, 1002
MslI CAYNNNNRTG 2 cut(s) 38, 589
MspI CCGG 3 cut(s) 161, 540, 744
MspR9I CCNGG 2 cut(s) 522, 762
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 2 cut(s) 528, 1045
MvaI CCWGG 2 cut(s) 522, 762
MwoI GCNNNNNNNGC 6 cut(s) 91, 457, 677, 766, 941, 1208
NcoI CCATGG 1 cut(s) 426
NdeII GATC 2 cut(s) 973, 1119
NlaIII CATG 5 cut(s) 61, 233, 430, 655, 773
NlaIV GGNNCC 1 cut(s) 663
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 2 cut(s) 62, 277
NsiI ATGCAT 2 cut(s) 376, 946
PctI GAATGC 2 cut(s) 528, 1045
PdmI GAANNNNTTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 755
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 2 cut(s) 325, 1201
Psp6I CCWGG 2 cut(s) 520, 760
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 2 cut(s) 520, 760
PspN4I GGNNCC 1 cut(s) 663
PspPI GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
RseI CAYNNNNRTG 2 cut(s) 38, 589
SaqAI TTAA 2 cut(s) 861, 1002
SatI GCNGC 2 cut(s) 324, 1200
Sau3AI GATC 2 cut(s) 973, 1119
Sau96I GGNCC 7 cut(s) 146, 420, 707, 728, 746, 758, 1011
ScrFI CCNGG 2 cut(s) 522, 762
SfaNI GCATC 5 cut(s) 29, 361, 658, 931, 953
SinI GGWCC 4 cut(s) 146, 420, 746, 1011
SmiMI CAYNNNNRTG 2 cut(s) 38, 589
Sse9I AATT 7 cut(s) 190, 515, 534, 548, 693, 723, 1016
SspMI CTAG 6 cut(s) 53, 98, 338, 869, 980, 1125
StyD4I CCNGG 2 cut(s) 520, 760
StyI CCWWGG 4 cut(s) 318, 387, 426, 800
TaqI TCGA 1 cut(s) 1171
TasI AATT 7 cut(s) 190, 515, 534, 548, 693, 723, 1016
Tru1I TTAA 2 cut(s) 861, 1002
Tru9I TTAA 2 cut(s) 861, 1002
TscAI CASTG 1 cut(s) 961
TseFI GTSAC 2 cut(s) 62, 277
TseI GCWGC 2 cut(s) 323, 1199
Tsp45I GTSAC 2 cut(s) 62, 277
TspRI CASTG 1 cut(s) 961
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 4 cut(s) 146, 420, 746, 1011
XapI RAATTY 2 cut(s) 190, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 6 cut(s) 53, 98, 338, 869, 980, 1125
Zsp2I ATGCAT 2 cut(s) 376, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.