Rw1G024960

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0017711
Physical Location & Seq
Forward (+)
51391974 .. 51393540
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024960.1

Sequence Viewer

Length: 1413 bp
ATGTTTCTGGAATCCTTGAGACATTTTTATGATACCCAGTCTAGGCATGGGTCACCTTATCCCACTTGTAGAGCTTGCAAAGCTCTAGTCCACCACCATAACTTCACCATCACTCTCATTATTCCCACCATTGGACCTCCCCCAAAACCGGAGAAAACCCTTCTCCAAACCCTCCCAAATTCCATAAACTACTTCTTTCTCCCTCCTATTGATTTCCATGACCTCCCCCCAGAAACCAAAACCCAAACTAAAATAACCCTTTCTGTCACTCGCTCCCTTTCCGAAATACGCAACTTTTTCAAATCCTTGGCTGCAAGTTCCAGTCTAGTTGGGTTAGTGGTTGATATGTTTGGTACTGATGCATTTTATGTTGCCAAGGATTTCAATGTCCCATCATATTTGTTCTGGTCCACCATGGCTATTGGTTTGATTTTGTTGCTTCATTTGCCTAAGCTTGACAAAATGGTTGCTTGTGAATACAAAGACTTAGCTGAGCCTGTGAAATTACCAGGGGGCATTCCAATTTCCGGAGCTGAATTTCCAGAGCCATTTCAAGACAGAAAGAGTGAAGCATACAAATGGTTTCTTCAATATGGCAAAAGGTTTGATTTAGCCGAGGGTGTTATAGTGAATAGCTTCATGGAACTGGAGCCAGATGCTATAAAAGCCTTGCAAGATGAAATTGGGTTTCGTGGGCCACCAGTTCATCCAATTGGGCCGATTGTCCAGACCGGTCCATCTTATGGGCCTGGTGGGCATGAGTGTTTGAAATGGTTGGATGAACAACCAAGGGGGTCTGTTCTGTTTGTGTCATTTGGGAGTGGAGGAACTCTCTCATTTGAACAGCTTAATGAACTAGCATTAGGGCTTGAAATGAGTGGAACAAAGTTTTTGTGGGTTGTGAGAAGTCCAGATAACAAAGCTTCTGATGCATCGTTTTTCAGTGTCCAAAGCCAAACAGATCCTCTAGGGTTTTTACCAAAGGGGTTTAAGGAGAGGACCAAATTAGGTCAAGGTCTTTTGGTGCCATCATGGGCGCCACAAAGTGAGGTACTTAGCCATGGTTCGATAGGTGGGTTCTTGAGTCACTGTGGATGGAATTCAATCCTAGAGAGCATTGTCAACGGTGTCCCTCTCATTGCTTGGCCTTTATATGCAGAGCAAAAGATGAATGCAAATGTGTTGTGCGAAGCTTGGAAGGTGGCTCTGAGACCTAAAGCGAATGAAAATGGCATAGTGGGATGTGATGAGATCGCTAGAGTTGTGAAGGAACTAATGGAAGGGGAAGAAGGATTTAGGGTTCGACAGAGGATGAATGGATGGAAGAAAGCTGCTAATAAGGCATTGAGTGAAGAGGGTTCTTCCAGAAAGGCATTGTCTGAGTTGGCAATGAAGTTGAAGAAGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

470

Amino Acids

52.15

Weight (kDa)

7.63

Isoelectric Point (pI)

47.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 266 - 400 3.9e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16090
prunus_persica Prupe.2G184700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359041
rosa_laevigata RLG00000027906
rosa_multiflora Rmu_co8449533.1_g000001 Rmu_sc0001842.1_g000003
rosa_roxburghii Rroxscaffold_4G00297440
rosa_samantha Rh1AG280700 Rh1BG247700 Rh1CG264900 Rh1DG276000
rosa_wichuraiana Rw1G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1024, 1036
AccB7I CCANNNNNTGG 1 cut(s) 743
AccIII TCCGGA 1 cut(s) 527
AclWI GGATC 1 cut(s) 956
AcsI RAATTY 3 cut(s) 178, 536, 1099
AcyI GRCGYC 1 cut(s) 1037
AdeI CACNNNGTG 1 cut(s) 1046
AfaI GTAC 2 cut(s) 355, 1053
AfiI CCNNNNNNNGG 5 cut(s) 42, 131, 148, 527, 743
AgeI ACCGGT 1 cut(s) 731
AgsI TTSAA 9 cut(s) 301, 385, 554, 590, 769, 842, 872, 1104, 1399
AjnI CCWGG 2 cut(s) 508, 748
AloI GAACNNNNNNTCC 2 cut(s) 1284, 1316
Alw26I GTCTC 2 cut(s) 13, 1204
AlwI GGATC 1 cut(s) 956
Aor13HI TCCGGA 1 cut(s) 527
AoxI GGCC 4 cut(s) 695, 716, 746, 1145
ApeKI GCWGC 2 cut(s) 311, 1331
ApoI RAATTY 3 cut(s) 178, 536, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AsiGI ACCGGT 1 cut(s) 731
Asp700I GAANNNNTTC 1 cut(s) 635
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 7 cut(s) 134, 408, 695, 716, 734, 746, 999
AsuHPI GGTGA 2 cut(s) 45, 97
AvaII GGWCC 4 cut(s) 134, 408, 734, 999
BanI GGYRCC 2 cut(s) 1024, 1036
BbvI GCAGC 2 cut(s) 298, 1318
BccI CCATC 6 cut(s) 116, 400, 745, 1036, 1089, 1314
BciT130I CCWGG 2 cut(s) 510, 750
BcoDI GTCTC 2 cut(s) 13, 1204
BfaI CTAG 7 cut(s) 42, 86, 326, 857, 968, 1109, 1257
BfoI RGCGCY 1 cut(s) 1040
BglI GCCNNNNNGGC 1 cut(s) 754
BisI GCNGC 2 cut(s) 312, 1332
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 2 cut(s) 313, 1333
Bme1390I CCNGG 2 cut(s) 510, 750
Bme18I GGWCC 4 cut(s) 134, 408, 734, 999
BmgT120I GGNCC 7 cut(s) 134, 408, 695, 716, 734, 746, 999
BmiI GGNNCC 3 cut(s) 651, 1026, 1038
BmrFI CCNGG 2 cut(s) 510, 750
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 4 cut(s) 349, 646, 919, 941
BmuI ACTGGG 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 816, 848
BpmI CTGGAG 1 cut(s) 668
Bpu10I CCTNAGC 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 492
BpuEI CTTGAG 2 cut(s) 37, 1102
BsaHI GRCGYC 1 cut(s) 1037
BsaI GGTCTC 1 cut(s) 1204
BsaJI CCNNGG 7 cut(s) 306, 375, 414, 509, 615, 788, 1060
BsaWI WCCGGW 3 cut(s) 148, 527, 731
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 131, 148, 527, 743
Bse118I RCCGGY 1 cut(s) 731
Bse1I ACTGG 4 cut(s) 37, 321, 651, 701
Bse3DI GCAATG 2 cut(s) 1137, 1395
BseAI TCCGGA 1 cut(s) 527
BseBI CCWGG 2 cut(s) 510, 750
BseDI CCNNGG 7 cut(s) 306, 375, 414, 509, 615, 788, 1060
BseGI GGATG 6 cut(s) 706, 784, 1100, 1247, 1317, 1325
BseLI CCNNNNNNNGG 5 cut(s) 42, 131, 148, 527, 743
BseMI GCAATG 2 cut(s) 1137, 1395
BseMII CTCAG 3 cut(s) 483, 1199, 1371
BseNI ACTGG 4 cut(s) 37, 321, 651, 701
BseXI GCAGC 2 cut(s) 298, 1318
BshFI GGCC 4 cut(s) 697, 718, 748, 1147
BshNI GGYRCC 2 cut(s) 1024, 1036
BshTI ACCGGT 1 cut(s) 731
BsiSI CCGG 3 cut(s) 149, 528, 732
BslFI GGGAC 2 cut(s) 374, 1115
BslI CCNNNNNNNGG 5 cut(s) 42, 131, 148, 527, 743
BsmAI GTCTC 2 cut(s) 13, 1204
BsmFI GGGAC 2 cut(s) 374, 1115
BsmI GAATGC 2 cut(s) 516, 1177
BsnI GGCC 4 cut(s) 697, 718, 748, 1147
Bso31I GGTCTC 1 cut(s) 1204
Bsp13I TCCGGA 1 cut(s) 527
Bsp143I GATC 2 cut(s) 961, 1251
Bsp1720I GCTNAGC 1 cut(s) 492
Bsp19I CCATGG 2 cut(s) 414, 1060
BspANI GGCC 4 cut(s) 697, 718, 748, 1147
BspCNI CTCAG 3 cut(s) 484, 1200, 1372
BspEI TCCGGA 1 cut(s) 527
BspLI GGNNCC 3 cut(s) 651, 1026, 1038
BspPI GGATC 1 cut(s) 956
BspT107I GGYRCC 2 cut(s) 1024, 1036
BspTNI GGTCTC 1 cut(s) 1204
BsrDI GCAATG 2 cut(s) 1137, 1395
BsrFI RCCGGY 1 cut(s) 731
BsrI ACTGG 4 cut(s) 37, 321, 651, 701
BssAI RCCGGY 1 cut(s) 731
BssECI CCNNGG 7 cut(s) 306, 375, 414, 509, 615, 788, 1060
BssMI GATC 2 cut(s) 961, 1251
BssNI GRCGYC 1 cut(s) 1037
BssT1I CCWWGG 5 cut(s) 306, 375, 414, 788, 1060
Bst2UI CCWGG 2 cut(s) 510, 750
Bst4CI ACNGT 2 cut(s) 1091, 1127
Bst6I CTCTTC 1 cut(s) 1347
BstACI GRCGYC 1 cut(s) 1037
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 6 cut(s) 450, 487, 492, 1055, 1208, 1380
BstDSI CCRYGG 2 cut(s) 414, 1060
BstEII GGTNACC 1 cut(s) 51
BstF5I GGATG 6 cut(s) 706, 784, 1100, 1247, 1317, 1325
BstH2I RGCGCY 1 cut(s) 1040
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 2 cut(s) 964, 1254
BstMAI GTCTC 2 cut(s) 13, 1204
BstMBI GATC 2 cut(s) 961, 1251
BstMWI GCNNNNNNNGC 6 cut(s) 80, 445, 665, 754, 929, 1340
BstNI CCWGG 2 cut(s) 510, 750
BstPI GGTNACC 1 cut(s) 51
BstSCI CCNGG 2 cut(s) 508, 748
BstV1I GCAGC 2 cut(s) 298, 1318
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BsuRI GGCC 4 cut(s) 697, 718, 748, 1147
BtgI CCRYGG 2 cut(s) 414, 1060
BtsCI GGATG 6 cut(s) 706, 784, 1100, 1247, 1317, 1325
BtsIMutI CAGTG 2 cut(s) 949, 1087
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 1039
Cfr10I RCCGGY 1 cut(s) 731
Cfr13I GGNCC 7 cut(s) 134, 408, 695, 716, 734, 746, 999
Csp6I GTAC 2 cut(s) 354, 1052
CspAI ACCGGT 1 cut(s) 731
CviAII CATG 7 cut(s) 47, 218, 415, 640, 758, 1032, 1061
CviQI GTAC 2 cut(s) 354, 1052
DdeI CTNAG 6 cut(s) 450, 487, 492, 1055, 1208, 1380
DinI GGCGCC 1 cut(s) 1038
DpnI GATC 2 cut(s) 963, 1253
DpnII GATC 2 cut(s) 961, 1251
DraIII CACNNNGTG 1 cut(s) 1046
Eam1104I CTCTTC 1 cut(s) 1347
EarI CTCTTC 1 cut(s) 1347
Eco130I CCWWGG 5 cut(s) 306, 375, 414, 788, 1060
Eco31I GGTCTC 1 cut(s) 1204
Eco47I GGWCC 4 cut(s) 134, 408, 734, 999
Eco91I GGTNACC 1 cut(s) 51
EcoO65I GGTNACC 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 1099
EcoRII CCWGG 2 cut(s) 508, 748
EcoT14I CCWWGG 5 cut(s) 306, 375, 414, 788, 1060
EcoT22I ATGCAT 2 cut(s) 364, 934
EgeI GGCGCC 1 cut(s) 1038
EheI GGCGCC 1 cut(s) 1038
ErhI CCWWGG 5 cut(s) 306, 375, 414, 788, 1060
FaeI CATG 7 cut(s) 50, 221, 418, 643, 761, 1035, 1064
FaqI GGGAC 2 cut(s) 374, 1115
FatI CATG 7 cut(s) 46, 217, 414, 639, 757, 1031, 1060
Fnu4HI GCNGC 2 cut(s) 312, 1332
FokI GGATG 6 cut(s) 693, 791, 1107, 1254, 1324, 1332
Fsp4HI GCNGC 2 cut(s) 312, 1332
FspBI CTAG 7 cut(s) 42, 86, 326, 857, 968, 1109, 1257
GlaI GCGC 1 cut(s) 1038
GluI GCNGC 2 cut(s) 312, 1332
GsuI CTGGAG 1 cut(s) 668
HaeII RGCGCY 1 cut(s) 1040
HaeIII GGCC 4 cut(s) 697, 718, 748, 1147
HapII CCGG 3 cut(s) 149, 528, 732
HhaI GCGC 1 cut(s) 1039
Hin1I GRCGYC 1 cut(s) 1037
Hin1II CATG 7 cut(s) 50, 221, 418, 643, 761, 1035, 1064
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HindIII AAGCTT 3 cut(s) 452, 921, 1191
HinfI GANTC 2 cut(s) 11, 1084
HpaII CCGG 3 cut(s) 149, 528, 732
HphI GGTGA 2 cut(s) 45, 97
Hpy166II GTNNAC 3 cut(s) 91, 411, 1123
Hpy188I TCNGA 4 cut(s) 283, 928, 1209, 1381
Hpy188III TCNNGA 8 cut(s) 8, 528, 542, 554, 727, 911, 1081, 1365
Hpy8I GTNNAC 3 cut(s) 91, 411, 1123
HpyAV CCTTC 5 cut(s) 170, 1192, 1261, 1274, 1283
HpyCH4III ACNGT 2 cut(s) 1091, 1127
HpyCH4V TGCA 7 cut(s) 78, 314, 362, 673, 932, 1157, 1175
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 445, 665, 754, 929, 1340
HpyF3I CTNAG 6 cut(s) 450, 487, 492, 1055, 1208, 1380
Hsp92I GRCGYC 1 cut(s) 1037
Hsp92II CATG 7 cut(s) 50, 221, 418, 643, 761, 1035, 1064
HspAI GCGC 1 cut(s) 1037
KasI GGCGCC 1 cut(s) 1036
Kpn2I TCCGGA 1 cut(s) 527
Kzo9I GATC 2 cut(s) 961, 1251
LmnI GCTCC 3 cut(s) 278, 530, 649
Lsp1109I GCAGC 2 cut(s) 298, 1318
LweI GCATC 4 cut(s) 349, 646, 919, 941
MaeI CTAG 7 cut(s) 42, 86, 326, 857, 968, 1109, 1257
MaeIII GTNAC 3 cut(s) 51, 265, 1085
MalI GATC 2 cut(s) 963, 1253
MboI GATC 2 cut(s) 961, 1251
MboII GAAGA 6 cut(s) 578, 1298, 1336, 1353, 1364, 1411
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 961
MluCI AATT 8 cut(s) 178, 503, 522, 536, 681, 711, 1004, 1099
Mly113I GGCGCC 1 cut(s) 1037
MlyI GAGTC 1 cut(s) 1093
MmeI TCCRAC 1 cut(s) 756
Mph1103I ATGCAT 2 cut(s) 364, 934
MroI TCCGGA 1 cut(s) 527
MroXI GAANNNNTTC 1 cut(s) 635
MseI TTAA 2 cut(s) 849, 990
MslI CAYNNNNRTG 2 cut(s) 27, 577
MspI CCGG 3 cut(s) 149, 528, 732
MspR9I CCNGG 2 cut(s) 510, 750
MunI CAATTG 1 cut(s) 711
Mva1269I GAATGC 2 cut(s) 516, 1177
MvaI CCWGG 2 cut(s) 510, 750
MwoI GCNNNNNNNGC 6 cut(s) 80, 445, 665, 754, 929, 1340
NarI GGCGCC 1 cut(s) 1037
NcoI CCATGG 2 cut(s) 414, 1060
NdeII GATC 2 cut(s) 961, 1251
NlaIII CATG 7 cut(s) 50, 221, 418, 643, 761, 1035, 1064
NlaIV GGNNCC 3 cut(s) 651, 1026, 1038
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 3 cut(s) 51, 265, 1085
NsiI ATGCAT 2 cut(s) 364, 934
PctI GAATGC 2 cut(s) 516, 1177
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 743
PinAI ACCGGT 1 cut(s) 731
PkrI GCNGC 2 cut(s) 313, 1333
PleI GAGTC 1 cut(s) 1092
PluTI GGCGCC 1 cut(s) 1040
PpsI GAGTC 1 cut(s) 1092
Psp6I CCWGG 2 cut(s) 508, 748
PspEI GGTNACC 1 cut(s) 51
PspGI CCWGG 2 cut(s) 508, 748
PspN4I GGNNCC 3 cut(s) 651, 1026, 1038
PspPI GGNCC 7 cut(s) 134, 408, 695, 716, 734, 746, 999
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 2 cut(s) 355, 1053
RsaNI GTAC 2 cut(s) 354, 1052
RseI CAYNNNNRTG 2 cut(s) 27, 577
SaqAI TTAA 2 cut(s) 849, 990
SatI GCNGC 2 cut(s) 312, 1332
Sau3AI GATC 2 cut(s) 961, 1251
Sau96I GGNCC 7 cut(s) 134, 408, 695, 716, 734, 746, 999
SchI GAGTC 1 cut(s) 1093
ScrFI CCNGG 2 cut(s) 510, 750
SfaNI GCATC 4 cut(s) 349, 646, 919, 941
SfoI GGCGCC 1 cut(s) 1038
SinI GGWCC 4 cut(s) 134, 408, 734, 999
SmiMI CAYNNNNRTG 2 cut(s) 27, 577
SmlI CTYRAG 2 cut(s) 16, 1081
SmoI CTYRAG 2 cut(s) 16, 1081
Sse9I AATT 8 cut(s) 178, 503, 522, 536, 681, 711, 1004, 1099
SspDI GGCGCC 1 cut(s) 1036
SspMI CTAG 7 cut(s) 42, 86, 326, 857, 968, 1109, 1257
StyD4I CCNGG 2 cut(s) 508, 748
StyI CCWWGG 5 cut(s) 306, 375, 414, 788, 1060
TaaI ACNGT 2 cut(s) 1091, 1127
TaqI TCGA 2 cut(s) 1067, 1303
TasI AATT 8 cut(s) 178, 503, 522, 536, 681, 711, 1004, 1099
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 2 cut(s) 849, 990
Tru9I TTAA 2 cut(s) 849, 990
TscAI CASTG 2 cut(s) 949, 1094
TseFI GTSAC 3 cut(s) 51, 265, 1085
TseI GCWGC 2 cut(s) 311, 1331
Tsp45I GTSAC 3 cut(s) 51, 265, 1085
TspRI CASTG 2 cut(s) 949, 1094
Van91I CCANNNNNTGG 1 cut(s) 743
VpaK11BI GGWCC 4 cut(s) 134, 408, 734, 999
XapI RAATTY 3 cut(s) 178, 536, 1099
XcmI CCANNNNNNNNNTGG 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 7 cut(s) 42, 86, 326, 857, 968, 1109, 1257
Zsp2I ATGCAT 2 cut(s) 364, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.