Rroxscaffold_4G00297440

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017711
Physical Location & Seq
Reverse (-)
17354849 .. 17355844
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297440.1

Sequence Viewer

Length: 996 bp
ATGGCTATTGGTTTGATTTTGTTGCTTCATTTGCCTAAGCTTGACAAAATGGTTGCTTGTGAATACAAAGACTTAGCTGAGCCTGTGAAATTACCAGGGTGCATTCCAATTTCCGGAGCTGAATTTCCAGAACCATTTCAAGACAGAAAGAGTGAAGCATACAAATGGTTTCTTCAATATGGCAAAAGGTTTGATTTAGCTGAGGGTGTTATAGTGAATAGCTTCATGGAACTGGAGCCAGATGCTATAAAAACCTTGCAAGATGAAATTGGGCTTCGTGGGCCACCAGTTTATCCAATTGGGCCGATTGTCCGGACCGGTCCATCTTATGGGTCTGGTGGGCATGAGTGTTTGAAATGGTTGGATGAACAACCAAGGGGGTCTGTTCTGTTTGTGTCATTTGGGAGTGGTGGAACTCTCTCGTTTGAACAGCTTAATGAACTAGCATTAGGGCTTGAAATGAGTGGAACAAAGTTTTTGTGGGTTGTGAGAAGTCCAGATAACAAAGCTTCTGATGCATCGTTTTTCAGTGTCCAAAGCCAAACAGATCCTCTAGTGTTTTTACCAAAGGGGTTTAGGGAGAGGACCATATTAGGTCGAGGTCTTTTGGTGCCATCATGGGCGCCACAAAGTGAGGTACTTAGACACGGTTCGGTAGGTGGGTTCTTGAGTCACTGTGGGTGGAATTCAATCCTCGAGAGCATTTTCAACGGTGTCCCTCTCATTGCTTGGCCTTTATATGCAGAGCAAAAGATGAATGCAAATGTGTTGTGCGAAGCTTGGAAGGTGTCTCTGAGACCTAAAGCGAATGAAAATGGCATAGTGGGATGTGATGAGATCGCTAGAGTTGTGAAGGAACTAATGGAAGGGGAAGAAGGATTTAGGGTTCGACAGAGGATGAATGGATGGAAGGAAGCTGCTAATAAGGCATTGAGTGTAGAGGGTTCTTCCAGAAAGGCATTGTCTGAGTTGGCGATGAAGTTGAAGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

331

Amino Acids

36.62

Weight (kDa)

6.56

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 128 - 262 7.4e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16090
prunus_persica Prupe.2G184700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359041
rosa_laevigata RLG00000027906
rosa_multiflora Rmu_co8449533.1_g000001 Rmu_sc0001842.1_g000003
rosa_roxburghii Rroxscaffold_4G00297440
rosa_samantha Rh1AG280700 Rh1BG247700 Rh1CG264900 Rh1DG276000
rosa_wichuraiana Rw1G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 610, 622
AccB7I CCANNNNNTGG 1 cut(s) 329
AccIII TCCGGA 2 cut(s) 113, 312
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 2 cut(s) 122, 685
AcyI GRCGYC 1 cut(s) 623
AdeI CACNNNGTG 1 cut(s) 632
AfaI GTAC 1 cut(s) 639
AfiI CCNNNNNNNGG 2 cut(s) 113, 329
AgeI ACCGGT 1 cut(s) 317
AgsI TTSAA 8 cut(s) 140, 176, 355, 428, 458, 690, 709, 985
AjnI CCWGG 1 cut(s) 94
AloI GAACNNNNNNTCC 2 cut(s) 870, 902
AluBI AGCT 9 cut(s) 40, 77, 119, 200, 222, 433, 509, 779, 917
AluI AGCT 9 cut(s) 40, 77, 119, 200, 222, 433, 509, 779, 917
Alw26I GTCTC 2 cut(s) 790, 795
AlwI GGATC 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 695
Aor13HI TCCGGA 2 cut(s) 113, 312
AoxI GGCC 3 cut(s) 281, 302, 731
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 2 cut(s) 122, 685
AsiGI ACCGGT 1 cut(s) 317
Asp700I GAANNNNTTC 2 cut(s) 135, 221
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 5 cut(s) 281, 302, 315, 320, 585
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 3 cut(s) 315, 320, 585
BanI GGYRCC 2 cut(s) 610, 622
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 904
BccI CCATC 3 cut(s) 331, 622, 900
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 790, 795
BfaI CTAG 3 cut(s) 443, 554, 843
BfoI RGCGCY 1 cut(s) 626
BisI GCNGC 1 cut(s) 918
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 919
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 3 cut(s) 315, 320, 585
BmeT110I CYCGRG 1 cut(s) 695
BmgT120I GGNCC 5 cut(s) 281, 302, 315, 320, 585
BmiI GGNNCC 3 cut(s) 237, 612, 624
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 3 cut(s) 232, 505, 527
BpmI CTGGAG 1 cut(s) 254
Bpu10I CCTNAGC 2 cut(s) 36, 201
Bpu1102I GCTNAGC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 790
BsaJI CCNNGG 2 cut(s) 95, 374
BsaWI WCCGGW 3 cut(s) 113, 312, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 329
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 237, 287
Bse3DI GCAATG 1 cut(s) 723
BseAI TCCGGA 2 cut(s) 113, 312
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 95, 374
BseGI GGATG 4 cut(s) 370, 833, 903, 911
BseLI CCNNNNNNNGG 2 cut(s) 113, 329
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 4 cut(s) 69, 192, 785, 957
BseNI ACTGG 2 cut(s) 237, 287
BseXI GCAGC 1 cut(s) 904
BshFI GGCC 3 cut(s) 283, 304, 733
BshNI GGYRCC 2 cut(s) 610, 622
BshTI ACCGGT 1 cut(s) 317
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 3 cut(s) 114, 313, 318
BslFI GGGAC 1 cut(s) 701
BslI CCNNNNNNNGG 2 cut(s) 113, 329
BsmAI GTCTC 2 cut(s) 790, 795
BsmFI GGGAC 1 cut(s) 701
BsmI GAATGC 2 cut(s) 102, 763
BsnI GGCC 3 cut(s) 283, 304, 733
Bso31I GGTCTC 1 cut(s) 790
BsoBI CYCGRG 1 cut(s) 695
Bsp13I TCCGGA 2 cut(s) 113, 312
Bsp143I GATC 2 cut(s) 547, 837
Bsp1720I GCTNAGC 1 cut(s) 78
BspANI GGCC 3 cut(s) 283, 304, 733
BspCNI CTCAG 4 cut(s) 70, 193, 786, 958
BspEI TCCGGA 2 cut(s) 113, 312
BspLI GGNNCC 3 cut(s) 237, 612, 624
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 2 cut(s) 610, 622
BspTNI GGTCTC 1 cut(s) 790
BsrDI GCAATG 1 cut(s) 723
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 2 cut(s) 237, 287
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 95, 374
BssMI GATC 2 cut(s) 547, 837
BssNI GRCGYC 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 650, 677, 713
BstACI GRCGYC 1 cut(s) 623
BstDEI CTNAG 7 cut(s) 36, 73, 78, 201, 641, 794, 966
BstF5I GGATG 4 cut(s) 370, 833, 903, 911
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 2 cut(s) 550, 840
BstMAI GTCTC 2 cut(s) 790, 795
BstMBI GATC 2 cut(s) 547, 837
BstMWI GCNNNNNNNGC 4 cut(s) 31, 280, 515, 926
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 904
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 3 cut(s) 283, 304, 733
BtgZI GCGATG 1 cut(s) 989
BtsCI GGATG 4 cut(s) 370, 833, 903, 911
BtsIMutI CAGTG 2 cut(s) 535, 673
CfoI GCGC 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 5 cut(s) 281, 302, 315, 320, 585
CpoI CGGWCCG 1 cut(s) 315
Csp6I GTAC 1 cut(s) 638
CspAI ACCGGT 1 cut(s) 317
CspI CGGWCCG 1 cut(s) 315
CviAII CATG 3 cut(s) 226, 344, 618
CviQI GTAC 1 cut(s) 638
DdeI CTNAG 7 cut(s) 36, 73, 78, 201, 641, 794, 966
DinI GGCGCC 1 cut(s) 624
DpnI GATC 2 cut(s) 549, 839
DpnII GATC 2 cut(s) 547, 837
DraIII CACNNNGTG 1 cut(s) 632
Eco130I CCWWGG 1 cut(s) 374
Eco31I GGTCTC 1 cut(s) 790
Eco47I GGWCC 3 cut(s) 315, 320, 585
Eco88I CYCGRG 1 cut(s) 695
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 520
EgeI GGCGCC 1 cut(s) 624
EheI GGCGCC 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 374
FaeI CATG 3 cut(s) 229, 347, 621
FaqI GGGAC 1 cut(s) 701
FatI CATG 3 cut(s) 225, 343, 617
Fnu4HI GCNGC 1 cut(s) 918
FokI GGATG 4 cut(s) 377, 840, 910, 918
Fsp4HI GCNGC 1 cut(s) 918
FspBI CTAG 3 cut(s) 443, 554, 843
GlaI GCGC 1 cut(s) 624
GluI GCNGC 1 cut(s) 918
GsuI CTGGAG 1 cut(s) 254
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 3 cut(s) 283, 304, 733
HapII CCGG 3 cut(s) 114, 313, 318
HhaI GCGC 1 cut(s) 625
Hin1I GRCGYC 1 cut(s) 623
Hin1II CATG 3 cut(s) 229, 347, 621
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HindIII AAGCTT 3 cut(s) 38, 507, 777
HinfI GANTC 1 cut(s) 670
HpaII CCGG 3 cut(s) 114, 313, 318
Hpy188I TCNGA 3 cut(s) 514, 795, 967
Hpy188III TCNNGA 8 cut(s) 114, 128, 140, 313, 497, 667, 697, 951
HpyAV CCTTC 5 cut(s) 778, 847, 860, 869, 904
HpyCH4III ACNGT 3 cut(s) 650, 677, 713
HpyCH4V TGCA 5 cut(s) 102, 259, 518, 743, 761
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 280, 515, 926
HpyF3I CTNAG 7 cut(s) 36, 73, 78, 201, 641, 794, 966
Hsp92I GRCGYC 1 cut(s) 623
Hsp92II CATG 3 cut(s) 229, 347, 621
HspAI GCGC 1 cut(s) 623
KasI GGCGCC 1 cut(s) 622
Kpn2I TCCGGA 2 cut(s) 113, 312
Kzo9I GATC 2 cut(s) 547, 837
LmnI GCTCC 2 cut(s) 116, 235
Lsp1109I GCAGC 1 cut(s) 904
LweI GCATC 3 cut(s) 232, 505, 527
MaeI CTAG 3 cut(s) 443, 554, 843
MaeIII GTNAC 1 cut(s) 671
MalI GATC 2 cut(s) 549, 839
MboI GATC 2 cut(s) 547, 837
MboII GAAGA 3 cut(s) 164, 884, 939
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 547
MluCI AATT 6 cut(s) 89, 108, 122, 267, 297, 685
Mly113I GGCGCC 1 cut(s) 623
MlyI GAGTC 1 cut(s) 679
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 9 cut(s) 196, 561, 576, 593, 628, 704, 729, 888, 934
Mph1103I ATGCAT 1 cut(s) 520
MroI TCCGGA 2 cut(s) 113, 312
MroXI GAANNNNTTC 2 cut(s) 135, 221
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 163
MspI CCGG 3 cut(s) 114, 313, 318
MspR9I CCNGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 2 cut(s) 102, 763
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 31, 280, 515, 926
NarI GGCGCC 1 cut(s) 623
NdeII GATC 2 cut(s) 547, 837
NlaIII CATG 3 cut(s) 229, 347, 621
NlaIV GGNNCC 3 cut(s) 237, 612, 624
NmuCI GTSAC 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 520
PaeR7I CTCGAG 1 cut(s) 695
PctI GAATGC 2 cut(s) 102, 763
PdmI GAANNNNTTC 2 cut(s) 135, 221
PflMI CCANNNNNTGG 1 cut(s) 329
PinAI ACCGGT 1 cut(s) 317
PkrI GCNGC 1 cut(s) 919
PleI GAGTC 1 cut(s) 678
PluTI GGCGCC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 3 cut(s) 237, 612, 624
PspPI GGNCC 5 cut(s) 281, 302, 315, 320, 585
PsuI RGATCY 1 cut(s) 547
RsaI GTAC 1 cut(s) 639
RsaNI GTAC 1 cut(s) 638
RseI CAYNNNNRTG 1 cut(s) 163
Rsr2I CGGWCCG 1 cut(s) 315
RsrII CGGWCCG 1 cut(s) 315
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 1 cut(s) 918
Sau3AI GATC 2 cut(s) 547, 837
Sau96I GGNCC 5 cut(s) 281, 302, 315, 320, 585
SchI GAGTC 1 cut(s) 679
ScrFI CCNGG 1 cut(s) 96
SfaNI GCATC 3 cut(s) 232, 505, 527
SfoI GGCGCC 1 cut(s) 624
Sfr274I CTCGAG 1 cut(s) 695
SinI GGWCC 3 cut(s) 315, 320, 585
SlaI CTCGAG 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 163
SmlI CTYRAG 2 cut(s) 667, 695
SmoI CTYRAG 2 cut(s) 667, 695
Sse9I AATT 6 cut(s) 89, 108, 122, 267, 297, 685
SspDI GGCGCC 1 cut(s) 622
SspMI CTAG 3 cut(s) 443, 554, 843
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 374
TaaI ACNGT 3 cut(s) 650, 677, 713
TaqI TCGA 3 cut(s) 598, 696, 889
TasI AATT 6 cut(s) 89, 108, 122, 267, 297, 685
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 2 cut(s) 535, 680
TseFI GTSAC 1 cut(s) 671
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 1 cut(s) 671
TspDTI ATGAA 9 cut(s) 17, 214, 279, 381, 453, 770, 825, 914, 992
TspRI CASTG 2 cut(s) 535, 680
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 3 cut(s) 315, 320, 585
XapI RAATTY 2 cut(s) 122, 685
XhoI CTCGAG 1 cut(s) 695
XmnI GAANNNNTTC 2 cut(s) 135, 221
XspI CTAG 3 cut(s) 443, 554, 843
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.