RLG00000027906

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0017711
Physical Location & Seq
Reverse (-)
16644892 .. 16646316
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027906

Sequence Viewer

Length: 1425 bp
ATGGAAAACACCCACAAAGCATTGTCACCACACATAGTTATGATACCTAGTCCGGGCATGGGTCACCTTATCCCACTTGTAGAGCTTGCCAAGCTTCTAGTCCACCAGCATAACTTCACCATCACCTTCATTATTCCCACCATTGGACCTCCCCCAAAACCGGAGAAAACCCTCCTCCAAACCCTCCCAAATTCCATAAACTACTTCTTTCTCCCTCCTATTGATTTCCAGGACCTCCCCCCAGAAACCAAAACCCAAACTAAAATAACCCTTTCTGTCACTCGCTCCCTTTCCGAAATACGCAACGTTTTCAAATCCTTGGCTGCAAGTTCCAGTCTAGTTGGGTTAGTGGTTGATATGTTTGGTACCGATGCATTTTATGTTGCCAAGGATTTCAATGTCCCATCATATTTGTTCTGGTCCACCATGGCTATTGGTTTGATTTTGTTGCTTCATTTGCCTAAGCTTGACAAAATGGTTGTTTGTGAATACAAAGACTTATCTGAGCCTGTGAAATTACCAGGGTGCATTACAATTTCCGGAGCTGAATTTCCAGAGCCATTTCAAGACAGAAAGAGTGAAGCATACAAATGGTTTCTTCAATATGGCAAAAGGTTTGATTTAGCCGAGGGTGTTATAGTGAATAGCTTCATGGAACTGGAGCCAGATGCTATAAAAGCCTTGCAAGATGAAATTGGGCTTCGTGGGCCACCAGTTTTTCCAATTGGGCCGATTATCCAGACCGGTCCATCTTATGGGCCTGGTGGGCATGAGTGTTTGAAATGGTTGGATGAACAACCAAGGGGTTCTGTTCTGTTTGTGTCATTTGGGAGTGGCGGAACTCTCTCGTTTGAACAGCTTAATGAACTAGCATTAGGGCTTGAAATGAGTGGAACAAAGTTTTTGTGGGTTGTGAGAAGTCCAGATAACAAAGCTTCTGATGCATCGTTTTTCAGTGTCCAAAGCCAAACAGATCCTCTAGGCTTTTTACCAAAGGGGTTTCAGGAGAGGACCAAATTAGGTCGAGGTCTTTTGGTGCCATCATGGGCCCCACAAAGTGAGGTACTTAGCCATGGTTCGATAGGTGGGTTCTTGAGTCACTGTGGATGGAATTCAATCCTCGAGAGCATTGTCAACGGTGTCCCTCTCATTGCTTGGCCTTTATATGCAGAGCAAAAGATGAATGCAAATGTGTTGTGCGAAGCTTGGAAGGTGGCTTTGAGACCTAAAGCGAATGAAAATGGCATAGTCGGATGTGATGAGATCGGTAGAGTGGTGAAGGAACTAATGGAAGGGGAAGAAGGATTTAGGGTTCGACAGAGGATGAATGGATGGAAGGAAGCTGCTAATAAGGCATTGAGTGAAGAGGGTTCTTCCAGAAAGGCATTGTCTGAGTTGGCGATGAAGTTGAAGAAGCATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

475

Amino Acids

52.39

Weight (kDa)

6.4

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 270 - 403 5.9e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017711)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16090
prunus_persica Prupe.2G184700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0359041
rosa_laevigata RLG00000027906
rosa_multiflora Rmu_co8449533.1_g000001 Rmu_sc0001842.1_g000003
rosa_roxburghii Rroxscaffold_4G00297440
rosa_samantha Rh1AG280700 Rh1BG247700 Rh1CG264900 Rh1DG276000
rosa_wichuraiana Rw1G024960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 2 cut(s) 365, 1036
AccB7I CCANNNNNTGG 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 539
AciI CCGC 1 cut(s) 837
AclI AACGTT 1 cut(s) 306
AclWI GGATC 1 cut(s) 968
AcsI RAATTY 3 cut(s) 190, 548, 1111
AdeI CACNNNGTG 1 cut(s) 1058
AfaI GTAC 2 cut(s) 367, 1065
AfiI CCNNNNNNNGG 5 cut(s) 53, 59, 143, 160, 755
AgeI ACCGGT 1 cut(s) 743
AgsI TTSAA 9 cut(s) 313, 397, 566, 602, 781, 854, 884, 1116, 1411
AjnI CCWGG 3 cut(s) 228, 520, 760
AloI GAACNNNNNNTCC 2 cut(s) 1296, 1328
AluBI AGCT 9 cut(s) 85, 94, 466, 545, 648, 859, 935, 1205, 1343
AluI AGCT 9 cut(s) 85, 94, 466, 545, 648, 859, 935, 1205, 1343
Alw26I GTCTC 1 cut(s) 1216
AlwI GGATC 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 1121
Aor13HI TCCGGA 1 cut(s) 539
AoxI GGCC 5 cut(s) 707, 728, 758, 1047, 1157
ApaI GGGCCC 1 cut(s) 1051
ApeKI GCWGC 2 cut(s) 323, 1343
ApoI RAATTY 3 cut(s) 190, 548, 1111
AsiGI ACCGGT 1 cut(s) 743
Asp700I GAANNNNTTC 1 cut(s) 647
Asp718I GGTACC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 5 cut(s) 18, 56, 109, 115, 1288
AvaI CYCGRG 1 cut(s) 1121
AvaII GGWCC 5 cut(s) 146, 232, 420, 746, 1011
BaeGI GKGCMC 1 cut(s) 1051
BanI GGYRCC 2 cut(s) 365, 1036
BanII GRGCYC 1 cut(s) 1051
BbvI GCAGC 2 cut(s) 310, 1330
BccI CCATC 6 cut(s) 128, 412, 757, 1048, 1101, 1326
BciT130I CCWGG 3 cut(s) 230, 522, 762
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 1216
BfaI CTAG 5 cut(s) 48, 98, 338, 869, 980
BglI GCCNNNNNGGC 1 cut(s) 766
BisI GCNGC 2 cut(s) 324, 1344
BlsI GCNGC 2 cut(s) 325, 1345
Bme1390I CCNGG 4 cut(s) 54, 230, 522, 762
Bme18I GGWCC 5 cut(s) 146, 232, 420, 746, 1011
BmeT110I CYCGRG 1 cut(s) 1121
BmiI GGNNCC 5 cut(s) 367, 663, 1038, 1049, 1050
BmrFI CCNGG 4 cut(s) 54, 230, 522, 762
BmsI GCATC 4 cut(s) 361, 658, 931, 953
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 1114
BpuMI CCSGG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 1216
BsaJI CCNNGG 7 cut(s) 318, 387, 426, 521, 627, 800, 1072
BsaWI WCCGGW 3 cut(s) 160, 539, 743
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 59, 143, 160, 755
Bse118I RCCGGY 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 333, 663, 713
Bse3DI GCAATG 1 cut(s) 1149
BseAI TCCGGA 1 cut(s) 539
BseBI CCWGG 3 cut(s) 230, 522, 762
BseDI CCNNGG 7 cut(s) 318, 387, 426, 521, 627, 800, 1072
BseGI GGATG 5 cut(s) 796, 1112, 1259, 1329, 1337
BseLI CCNNNNNNNGG 5 cut(s) 53, 59, 143, 160, 755
BseMI GCAATG 1 cut(s) 1149
BseMII CTCAG 2 cut(s) 495, 1383
BseNI ACTGG 3 cut(s) 333, 663, 713
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 1051
BseXI GCAGC 2 cut(s) 310, 1330
BshFI GGCC 5 cut(s) 709, 730, 760, 1049, 1159
BshNI GGYRCC 2 cut(s) 365, 1036
BshTI ACCGGT 1 cut(s) 743
BsiHKCI CYCGRG 1 cut(s) 1121
BsiSI CCGG 4 cut(s) 53, 161, 540, 744
BslFI GGGAC 2 cut(s) 386, 1127
BslI CCNNNNNNNGG 5 cut(s) 53, 59, 143, 160, 755
BsmAI GTCTC 1 cut(s) 1216
BsmFI GGGAC 2 cut(s) 386, 1127
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 5 cut(s) 709, 730, 760, 1049, 1159
Bso31I GGTCTC 1 cut(s) 1216
BsoBI CYCGRG 1 cut(s) 1121
Bsp120I GGGCCC 1 cut(s) 1047
Bsp1286I GDGCHC 1 cut(s) 1051
Bsp13I TCCGGA 1 cut(s) 539
Bsp143I GATC 2 cut(s) 973, 1263
Bsp19I CCATGG 2 cut(s) 426, 1072
BspACI CCGC 1 cut(s) 837
BspANI GGCC 5 cut(s) 709, 730, 760, 1049, 1159
BspCNI CTCAG 2 cut(s) 496, 1384
BspEI TCCGGA 1 cut(s) 539
BspLI GGNNCC 5 cut(s) 367, 663, 1038, 1049, 1050
BspPI GGATC 1 cut(s) 968
BspT107I GGYRCC 2 cut(s) 365, 1036
BspTNI GGTCTC 1 cut(s) 1216
BsrDI GCAATG 1 cut(s) 1149
BsrFI RCCGGY 1 cut(s) 743
BsrI ACTGG 3 cut(s) 333, 663, 713
BssAI RCCGGY 1 cut(s) 743
BssECI CCNNGG 7 cut(s) 318, 387, 426, 521, 627, 800, 1072
BssMI GATC 2 cut(s) 973, 1263
BssT1I CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
Bst2UI CCWGG 3 cut(s) 230, 522, 762
Bst4CI ACNGT 2 cut(s) 1103, 1139
Bst6I CTCTTC 1 cut(s) 1359
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 4 cut(s) 462, 504, 1067, 1392
BstDSI CCRYGG 2 cut(s) 426, 1072
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 5 cut(s) 796, 1112, 1259, 1329, 1337
BstKTI GATC 2 cut(s) 976, 1266
BstMAI GTCTC 1 cut(s) 1216
BstMBI GATC 2 cut(s) 973, 1263
BstMWI GCNNNNNNNGC 7 cut(s) 91, 457, 677, 706, 766, 941, 1352
BstNI CCWGG 3 cut(s) 230, 522, 762
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 4 cut(s) 52, 228, 520, 760
BstSLI GKGCMC 1 cut(s) 1051
BstV1I GCAGC 2 cut(s) 310, 1330
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 5 cut(s) 709, 730, 760, 1049, 1159
BtgI CCRYGG 2 cut(s) 426, 1072
BtgZI GCGATG 1 cut(s) 1415
BtsCI GGATG 5 cut(s) 796, 1112, 1259, 1329, 1337
BtsIMutI CAGTG 2 cut(s) 961, 1099
Cac8I GCNNGC 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 743
Csp6I GTAC 2 cut(s) 366, 1064
CspAI ACCGGT 1 cut(s) 743
CviAII CATG 6 cut(s) 58, 427, 652, 770, 1044, 1073
CviQI GTAC 2 cut(s) 366, 1064
DdeI CTNAG 4 cut(s) 462, 504, 1067, 1392
DpnI GATC 2 cut(s) 975, 1265
DpnII GATC 2 cut(s) 973, 1263
DraIII CACNNNGTG 1 cut(s) 1058
Eam1104I CTCTTC 1 cut(s) 1359
EarI CTCTTC 1 cut(s) 1359
EciI GGCGGA 1 cut(s) 852
Eco130I CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 1216
Eco47I GGWCC 5 cut(s) 146, 232, 420, 746, 1011
Eco88I CYCGRG 1 cut(s) 1121
Eco91I GGTNACC 1 cut(s) 62
EcoO109I RGGNCCY 2 cut(s) 232, 1048
EcoO65I GGTNACC 1 cut(s) 62
EcoRI GAATTC 1 cut(s) 1111
EcoRII CCWGG 3 cut(s) 228, 520, 760
EcoT14I CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
EcoT22I ATGCAT 2 cut(s) 376, 946
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
FaeI CATG 6 cut(s) 61, 430, 655, 773, 1047, 1076
FaqI GGGAC 2 cut(s) 386, 1127
FatI CATG 6 cut(s) 57, 426, 651, 769, 1043, 1072
Fnu4HI GCNGC 2 cut(s) 324, 1344
FokI GGATG 5 cut(s) 803, 1119, 1266, 1336, 1344
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 2 cut(s) 324, 1344
FspBI CTAG 5 cut(s) 48, 98, 338, 869, 980
GluI GCNGC 2 cut(s) 324, 1344
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 5 cut(s) 709, 730, 760, 1049, 1159
HapII CCGG 4 cut(s) 53, 161, 540, 744
Hin1II CATG 6 cut(s) 61, 430, 655, 773, 1047, 1076
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HindIII AAGCTT 4 cut(s) 92, 464, 933, 1203
HinfI GANTC 1 cut(s) 1096
HpaII CCGG 4 cut(s) 53, 161, 540, 744
HphI GGTGA 5 cut(s) 18, 56, 109, 115, 1288
Hpy166II GTNNAC 3 cut(s) 103, 423, 1135
Hpy188I TCNGA 5 cut(s) 295, 505, 940, 1253, 1393
Hpy188III TCNNGA 9 cut(s) 540, 554, 566, 739, 923, 1004, 1093, 1123, 1377
Hpy8I GTNNAC 3 cut(s) 103, 423, 1135
HpyAV CCTTC 6 cut(s) 136, 1204, 1273, 1286, 1295, 1330
HpyCH4III ACNGT 2 cut(s) 1103, 1139
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 7 cut(s) 326, 374, 528, 685, 944, 1169, 1187
HpyF10VI GCNNNNNNNGC 7 cut(s) 91, 457, 677, 706, 766, 941, 1352
HpyF3I CTNAG 4 cut(s) 462, 504, 1067, 1392
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 6 cut(s) 61, 430, 655, 773, 1047, 1076
Kpn2I TCCGGA 1 cut(s) 539
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 2 cut(s) 973, 1263
LmnI GCTCC 3 cut(s) 290, 542, 661
Lsp1109I GCAGC 2 cut(s) 310, 1330
LweI GCATC 4 cut(s) 361, 658, 931, 953
MaeI CTAG 5 cut(s) 48, 98, 338, 869, 980
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 4 cut(s) 24, 62, 277, 1097
MalI GATC 2 cut(s) 975, 1265
MboI GATC 2 cut(s) 973, 1263
MboII GAAGA 5 cut(s) 590, 1310, 1365, 1376, 1423
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 1 cut(s) 1051
MluCI AATT 8 cut(s) 190, 515, 534, 548, 693, 723, 1016, 1111
MlyI GAGTC 1 cut(s) 1105
MmeI TCCRAC 2 cut(s) 768, 1231
Mph1103I ATGCAT 2 cut(s) 376, 946
MroI TCCGGA 1 cut(s) 539
MroXI GAANNNNTTC 1 cut(s) 647
MseI TTAA 1 cut(s) 861
MslI CAYNNNNRTG 2 cut(s) 38, 589
MspI CCGG 4 cut(s) 53, 161, 540, 744
MspR9I CCNGG 4 cut(s) 54, 230, 522, 762
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 3 cut(s) 230, 522, 762
MwoI GCNNNNNNNGC 7 cut(s) 91, 457, 677, 706, 766, 941, 1352
NciI CCSGG 1 cut(s) 54
NcoI CCATGG 2 cut(s) 426, 1072
NdeII GATC 2 cut(s) 973, 1263
NlaIII CATG 6 cut(s) 61, 430, 655, 773, 1047, 1076
NlaIV GGNNCC 5 cut(s) 367, 663, 1038, 1049, 1050
NmeAIII GCCGAG 1 cut(s) 652
NmuCI GTSAC 4 cut(s) 24, 62, 277, 1097
NsiI ATGCAT 2 cut(s) 376, 946
PaeR7I CTCGAG 1 cut(s) 1121
PctI GAATGC 1 cut(s) 1189
PdmI GAANNNNTTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 755
PfoI TCCNGGA 1 cut(s) 228
PinAI ACCGGT 1 cut(s) 743
PkrI GCNGC 2 cut(s) 325, 1345
PleI GAGTC 1 cut(s) 1104
PpsI GAGTC 1 cut(s) 1104
PpuMI RGGWCCY 1 cut(s) 232
Psp1406I AACGTT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 228, 520, 760
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 3 cut(s) 228, 520, 760
PspN4I GGNNCC 5 cut(s) 367, 663, 1038, 1049, 1050
PspOMI GGGCCC 1 cut(s) 1047
PspPPI RGGWCCY 1 cut(s) 232
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 2 cut(s) 367, 1065
RsaNI GTAC 2 cut(s) 366, 1064
RseI CAYNNNNRTG 2 cut(s) 38, 589
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 2 cut(s) 324, 1344
Sau3AI GATC 2 cut(s) 973, 1263
SchI GAGTC 1 cut(s) 1105
ScrFI CCNGG 4 cut(s) 54, 230, 522, 762
SduI GDGCHC 1 cut(s) 1051
SfaNI GCATC 4 cut(s) 361, 658, 931, 953
Sfr274I CTCGAG 1 cut(s) 1121
SinI GGWCC 5 cut(s) 146, 232, 420, 746, 1011
SlaI CTCGAG 1 cut(s) 1121
SmiMI CAYNNNNRTG 2 cut(s) 38, 589
SmlI CTYRAG 2 cut(s) 1093, 1121
SmoI CTYRAG 2 cut(s) 1093, 1121
Sse9I AATT 8 cut(s) 190, 515, 534, 548, 693, 723, 1016, 1111
SsiI CCGC 1 cut(s) 837
SspMI CTAG 5 cut(s) 48, 98, 338, 869, 980
StyD4I CCNGG 4 cut(s) 52, 228, 520, 760
StyI CCWWGG 5 cut(s) 318, 387, 426, 800, 1072
TaaI ACNGT 2 cut(s) 1103, 1139
TaiI ACGT 1 cut(s) 309
TaqI TCGA 4 cut(s) 1024, 1079, 1122, 1315
TasI AATT 8 cut(s) 190, 515, 534, 548, 693, 723, 1016, 1111
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 2 cut(s) 961, 1106
TseFI GTSAC 4 cut(s) 24, 62, 277, 1097
TseI GCWGC 2 cut(s) 323, 1343
Tsp45I GTSAC 4 cut(s) 24, 62, 277, 1097
TspRI CASTG 2 cut(s) 961, 1106
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 5 cut(s) 146, 232, 420, 746, 1011
XapI RAATTY 3 cut(s) 190, 548, 1111
XhoI CTCGAG 1 cut(s) 1121
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 5 cut(s) 48, 98, 338, 869, 980
Zsp2I ATGCAT 2 cut(s) 376, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.