FvH4_7g16910

nephrocystin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016392
Physical Location & Seq
Reverse (-)
14513353 .. 14516512
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16910.t3

Sequence Viewer

Length: 1701 bp
ATGGCAGCTTTGGCGTCGTTAAAGAGCTCGCCTTTCGGGACCCCGGCCCGGTCGGTTACTATACCCGACCCGGTTCACAAGACCCGACCCGGGAAAAAGACCGCGCCCCCGGAGAAGCAACCGATGATTGATGAGGCAAATCTCGACAACCCGGATCTGGGTCCGTTTCTGCTGAAGCTGGCCCGGGAGGCGGTCGGGTCGGGCGAGAACCCGAACAAGGCGTTGGACTACGCGCTCCGGGCGGCCAAGTCGTTCGAGCGGTGTTCGGGTCCGGGTCTTGACCTGGCGATGAGCCTGCACCTGGTGGCGGCGATTTACTGTAGCTTGGGGAGGTTTGAGGAAGCGACTCGGGTTCTGGACCGGTCCATTGAGGTTTCGGATCCGGAAAACGGGTCGGATCATGCTCTGGCGAAGTTCTCGGGGTACATGCAGCTGGGTGACACGTACTCGATGCTGGGGCAGCTCGAGCAGTCTATAGTGTGTTACGGGTCGGGTCTGAAGATCCAGATGGATACTCTGGGTGAGTCCGACCCGAGAGTTGCAGAGACTTGCAGGTACCTAGCAGAGGCGCATGTCCAAGTTATGCAATTTGATGAAGCAGAGAACTATAGTATGAAGACACTTGAAATTCACAGGGAGCATAAGGGACCTGCGTCTATTGAAGAAGCAGCTGACCGTCGTTTAATGGCTCTCATCTATGAGGCGAAGGGGGATTATGAATCTGCACTTGAGCACCTTGTCCTTGCTAGCATGCTGATGATAGCCAATGGGCAAGACAACGAGGTTGCCGCTATTGATGTGGGAATTGGCGATATTTATTTGTCTCTTTGTCGCTTTGACGAGGCTGTTTTCTCCTACCAGAAAGCGCTCACAGTCTTCAAGTCTACAAGGGGCGAAAATCATCCTTCTGTTGCATCGGTTTTTATTCGCCTTGCTGATCTGTATTACAAGACAGGGAAGTTAAGAGAGTCTAAATCCTACTGTGAGAATGCCTTGAGGATATATGCAAAGCCTTTGCCTGGAATTGTCTCCGAGGAGATTGCCACCGGGCTGACTGAAATTGCAGCCATTTATGAAGCTGTGAATGAGCCTGAAGAGGCACTAAAGCTCTTGCAAAAGGCCATGAAGTTACTAGAGGATACCCCAGCACACCGAAGCACTATTGCAGGAATAGAAGCACAGATGGGTGTTATGTTCTACATGATTGGGAGGTTTGGGGAAGCTTGGAGTTCGTTGGACAGTGCTATAGAGAAGCTTCGCGCAAGCGGGGAGAAGAAATCAGCCTATTTTGGTATTGTGCTGAACCAGTTGGGATTGTCTTGTGTGCAGTTGTACAAATTAAATGAGGCTGTTCGACTTTTTGAAGAAGCAAGGGATATACTTGAGCAGGAGTGCGGCATTTGTCACTTGGATACTCTTGGTGTATATAGCAACCTTGCAGCAACTTATGATGCCACGGGAAGGGTTGAATCTGCAATTGAGATATTAGAGTACATTCTGAAGGTGAGGGAAGAAAAGCTTGGGACAGCAAATCCAGATGTTGATGATGAGAAGAAACGATTAGCTGATCTCTTGAAAGAAGCAGGAAGGGTGCGGAACAGAAAGGGAAAATCGCTTGAAAATCTAATTGGCGGTTCCAACTCCCAAAGGATGAAGAAGGAAGGAATGAAGAGGTGGTCTGGAACTAGTTACAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

567

Amino Acids

62.4

Weight (kDa)

5.43

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 2 - 52 5.8e-06 Tetratricopeptide repeat
TPR_MalT PF17874 2 - 200 4e-13 MalT-like TPR region
TPR_NPHP3 PF24885 65 - 197 6.2e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 68 - 142 3.9e-12 Tetratricopeptide repeat
TPR_12 PF13424 110 - 185 1.7e-10 Tetratricopeptide repeat
TPR_12 PF13424 238 - 310 6.7e-09 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016392)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16910
malus_domestica MD01G1083900.v1.1 MD07G1152700.v1.1
prunus_persica Prupe.2G191200_v2.0.a1
pyrus_communis pycom07g15090
rosa_chinensis RchiOBHm_Chr1g0360141
rosa_laevigata RLG00000027827
rosa_multiflora Rmu_sc0007813.1_g000005 Rmu_ssc0000368.1_g000043
rosa_roxburghii Rroxscaffold_4G00296350
rosa_rugosa Rorug01G0275300
rosa_samantha Rh1AG289100 Rh1BG254800 Rh1DG284200
rosa_wichuraiana Rw1G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 543, 658
Acc65I GGTACC 1 cut(s) 555
AccB1I GGYRCC 1 cut(s) 555
AccBSI CCGCTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 884
AccII CGCG 3 cut(s) 104, 233, 1260
AccIII TCCGGA 1 cut(s) 382
AclWI GGATC 5 cut(s) 162, 374, 387, 405, 496
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 627
AcuI CTGAAG 4 cut(s) 194, 518, 1113, 1520
AcyI GRCGYC 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 5 cut(s) 425, 446, 557, 1334, 1493
AfeI AGCGCT 1 cut(s) 867
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 7 cut(s) 626, 662, 880, 1364, 1469, 1576, 1619
AhlI ACTAGT 1 cut(s) 1685
AjnI CCWGG 3 cut(s) 282, 300, 1018
AjuI GAANNNNNNNTTGG 6 cut(s) 206, 238, 1503, 1535, 1611, 1643
Alw21I GWGCWC 2 cut(s) 29, 735
Alw26I GTCTC 3 cut(s) 539, 828, 1033
AlwI GGATC 5 cut(s) 162, 374, 387, 405, 496
Ama87I CYCGRG 6 cut(s) 89, 183, 348, 418, 464, 532
Aor13HI TCCGGA 1 cut(s) 382
Aor51HI AGCGCT 1 cut(s) 867
AoxI GGCC 4 cut(s) 45, 180, 243, 1119
ApeKI GCWGC 6 cut(s) 5, 430, 460, 668, 1064, 1439
ApoI RAATTY 1 cut(s) 627
AsiGI ACCGGT 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 555
AspLEI GCGC 5 cut(s) 106, 235, 571, 868, 1262
AspS9I GGNCC 8 cut(s) 39, 46, 161, 181, 269, 358, 363, 647
AsuHPI GGTGA 3 cut(s) 449, 533, 1516
AsuNHI GCTAGC 1 cut(s) 746
AvaI CYCGRG 6 cut(s) 89, 183, 348, 418, 464, 532
AvaII GGWCC 6 cut(s) 39, 161, 269, 358, 363, 647
BamHI GGATCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 555
BanII GRGCYC 1 cut(s) 29
BbsI GAAGAC 2 cut(s) 623, 868
Bbv12I GWGCWC 2 cut(s) 29, 735
BbvI GCAGC 6 cut(s) 17, 442, 472, 680, 1076, 1451
BccI CCATC 2 cut(s) 502, 1177
BcgI CGANNNNNNTGC 4 cut(s) 277, 311, 1022, 1056
BciT130I CCWGG 3 cut(s) 284, 302, 1020
BciVI GTATCC 3 cut(s) 505, 1132, 1405
BcoDI GTCTC 3 cut(s) 539, 828, 1033
BcuI ACTAGT 1 cut(s) 1685
BfaI CTAG 4 cut(s) 560, 747, 1133, 1686
BfmI CTRYAG 4 cut(s) 319, 474, 607, 1245
BfoI RGCGCY 1 cut(s) 869
BfuAI ACCTGC 2 cut(s) 543, 658
BfuI GTATCC 3 cut(s) 505, 1132, 1405
BglI GCCNNNNNGGC 1 cut(s) 188
Bme18I GGWCC 6 cut(s) 39, 161, 269, 358, 363, 647
BmeT110I CYCGRG 6 cut(s) 89, 183, 348, 418, 464, 532
BmgT120I GGNCC 8 cut(s) 39, 46, 161, 181, 269, 358, 363, 647
BmiI GGNNCC 8 cut(s) 40, 41, 162, 270, 381, 557, 648, 1636
BmsI GCATC 3 cut(s) 441, 923, 1441
BmtI GCTAGC 1 cut(s) 750
BoxI GACNNNNGTC 1 cut(s) 652
BpiI GAAGAC 2 cut(s) 623, 868
BpuEI CTTGAG 3 cut(s) 749, 1015, 1403
BsaAI YACGTR 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 6 cut(s) 42, 89, 108, 183, 1032, 1455
BsaWI WCCGGW 2 cut(s) 360, 382
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 1306
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 3 cut(s) 284, 302, 1020
BseDI CCNNGG 6 cut(s) 42, 89, 108, 183, 1032, 1455
BseGI GGATG 2 cut(s) 901, 1656
BseNI ACTGG 1 cut(s) 1306
BseRI GAGGAG 1 cut(s) 1049
BseXI GCAGC 6 cut(s) 17, 442, 472, 680, 1076, 1451
BseYI CCCAGC 3 cut(s) 433, 454, 1144
BsgI GTGCAG 3 cut(s) 281, 708, 1346
Bsh1236I CGCG 3 cut(s) 104, 233, 1260
Bsh1285I CGRYCG 2 cut(s) 53, 195
BshFI GGCC 4 cut(s) 47, 182, 245, 1121
BshNI GGYRCC 1 cut(s) 555
BshTI ACCGGT 1 cut(s) 360
BsiEI CGRYCG 2 cut(s) 53, 195
BsiHKAI GWGCWC 2 cut(s) 29, 735
BsiHKCI CYCGRG 6 cut(s) 89, 183, 348, 418, 464, 532
BslFI GGGAC 3 cut(s) 52, 660, 1537
BsmAI GTCTC 3 cut(s) 539, 828, 1033
BsmFI GGGAC 3 cut(s) 52, 660, 1537
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 4 cut(s) 47, 182, 245, 1121
BsoBI CYCGRG 6 cut(s) 89, 183, 348, 418, 464, 532
Bsp1286I GDGCHC 2 cut(s) 29, 735
Bsp13I TCCGGA 1 cut(s) 382
Bsp1407I TGTACA 1 cut(s) 1332
Bsp143I GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
BspANI GGCC 4 cut(s) 47, 182, 245, 1121
BspEI TCCGGA 1 cut(s) 382
BspFNI CGCG 3 cut(s) 104, 233, 1260
BspLI GGNNCC 8 cut(s) 40, 41, 162, 270, 381, 557, 648, 1636
BspMI ACCTGC 2 cut(s) 543, 658
BspOI GCTAGC 1 cut(s) 750
BspPI GGATC 5 cut(s) 162, 374, 387, 405, 496
BspT107I GGYRCC 1 cut(s) 555
BsrBI CCGCTC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 1332
BsrI ACTGG 1 cut(s) 1306
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 6 cut(s) 42, 89, 108, 183, 1032, 1455
BssMI GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
BssNI GRCGYC 1 cut(s) 14
Bst2UI CCWGG 3 cut(s) 284, 302, 1020
Bst4CI ACNGT 5 cut(s) 320, 677, 874, 983, 1241
Bst6I CTCTTC 2 cut(s) 1089, 1664
BstACI GRCGYC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 1332
BstBAI YACGTR 1 cut(s) 444
BstC8I GCNNGC 6 cut(s) 29, 180, 296, 748, 752, 1264
BstDSI CCRYGG 1 cut(s) 1455
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 2 cut(s) 901, 1656
BstFNI CGCG 3 cut(s) 104, 233, 1260
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 5 cut(s) 106, 235, 571, 868, 1262
BstKTI GATC 6 cut(s) 157, 382, 400, 504, 940, 1570
BstMAI GTCTC 3 cut(s) 539, 828, 1033
BstMBI GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
BstMCI CGRYCG 2 cut(s) 53, 195
BstMWI GCNNNNNNNGC 5 cut(s) 11, 188, 239, 460, 466
BstNI CCWGG 3 cut(s) 284, 302, 1020
BstNSI RCATGY 3 cut(s) 430, 575, 754
BstPAI GACNNNNGTC 1 cut(s) 652
BstSFI CTRYAG 4 cut(s) 319, 474, 607, 1245
BstUI CGCG 3 cut(s) 104, 233, 1260
BstV1I GCAGC 6 cut(s) 17, 442, 472, 680, 1076, 1451
BstV2I GAAGAC 2 cut(s) 623, 868
BstX2I RGATCY 3 cut(s) 154, 379, 501
BstYI RGATCY 3 cut(s) 154, 379, 501
BsuI GTATCC 3 cut(s) 505, 1132, 1405
BsuRI GGCC 4 cut(s) 47, 182, 245, 1121
BtgI CCRYGG 1 cut(s) 1455
BtgZI GCGATG 1 cut(s) 302
BtsCI GGATG 2 cut(s) 901, 1656
BtsIMutI CAGTG 1 cut(s) 1246
BveI ACCTGC 2 cut(s) 543, 658
Cac8I GCNNGC 6 cut(s) 29, 180, 296, 748, 752, 1264
CfoI GCGC 5 cut(s) 106, 235, 571, 868, 1262
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 8 cut(s) 39, 46, 161, 181, 269, 358, 363, 647
Cfr9I CCCGGG 2 cut(s) 89, 183
CseI GACGC 2 cut(s) 3, 642
CsiI ACCWGGT 1 cut(s) 300
Csp6I GTAC 5 cut(s) 424, 445, 556, 1333, 1492
CspAI ACCGGT 1 cut(s) 360
CviAII CATG 6 cut(s) 401, 427, 572, 751, 1123, 1201
CviQI GTAC 5 cut(s) 424, 445, 556, 1333, 1492
DpnI GATC 6 cut(s) 156, 381, 399, 503, 939, 1569
DpnII GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
DraIII CACNNNGTG 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 1089, 1664
EarI CTCTTC 2 cut(s) 1089, 1664
Ecl136II GAGCTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 29
Eco47I GGWCC 6 cut(s) 39, 161, 269, 358, 363, 647
Eco47III AGCGCT 1 cut(s) 867
Eco53kI GAGCTC 1 cut(s) 27
Eco57I CTGAAG 4 cut(s) 194, 518, 1113, 1520
Eco88I CYCGRG 6 cut(s) 89, 183, 348, 418, 464, 532
EcoICRI GAGCTC 1 cut(s) 27
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoO109I RGGNCCY 2 cut(s) 39, 647
EcoRII CCWGG 3 cut(s) 282, 300, 1018
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 6 cut(s) 404, 430, 575, 754, 1126, 1204
FalI AAGNNNNNCTT 2 cut(s) 1503, 1535
FaqI GGGAC 3 cut(s) 52, 660, 1537
FatI CATG 6 cut(s) 400, 426, 571, 750, 1122, 1200
FauI CCCGC 1 cut(s) 1259
FblI GTMKAC 1 cut(s) 884
FokI GGATG 2 cut(s) 888, 1663
FriOI GRGCYC 1 cut(s) 29
FspBI CTAG 4 cut(s) 560, 747, 1133, 1686
GlaI GCGC 5 cut(s) 105, 234, 570, 867, 1261
GsaI CCCAGC 3 cut(s) 437, 458, 1148
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 4 cut(s) 47, 182, 245, 1121
HgaI GACGC 2 cut(s) 3, 642
HhaI GCGC 5 cut(s) 106, 235, 571, 868, 1262
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 404, 430, 575, 754, 1126, 1204
Hin6I GCGC 5 cut(s) 104, 233, 569, 866, 1260
HinP1I GCGC 5 cut(s) 104, 233, 569, 866, 1260
HindIII AAGCTT 3 cut(s) 1221, 1253, 1517
HinfI GANTC 5 cut(s) 346, 524, 719, 968, 1469
HphI GGTGA 3 cut(s) 449, 533, 1516
Hpy166II GTNNAC 2 cut(s) 76, 885
Hpy188I TCNGA 6 cut(s) 379, 397, 498, 529, 1033, 1500
Hpy188III TCNNGA 9 cut(s) 37, 143, 278, 356, 383, 505, 1535, 1573, 1680
Hpy8I GTNNAC 2 cut(s) 76, 885
Hpy99I CGWCG 2 cut(s) 19, 681
HpyAV CCTTC 7 cut(s) 700, 915, 1455, 1495, 1581, 1651, 1655
HpyCH4III ACNGT 5 cut(s) 320, 677, 874, 983, 1241
HpyCH4IV ACGT 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 188, 239, 460, 466
HpySE526I ACGT 1 cut(s) 443
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 404, 430, 575, 754, 1126, 1204
HspAI GCGC 5 cut(s) 104, 233, 569, 866, 1260
KflI GGGWCCC 1 cut(s) 39
Kpn2I TCCGGA 1 cut(s) 382
KpnI GGTACC 1 cut(s) 559
Kzo9I GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
LmnI GCTCC 2 cut(s) 240, 637
Lsp1109I GCAGC 6 cut(s) 17, 442, 472, 680, 1076, 1451
LweI GCATC 3 cut(s) 441, 923, 1441
MabI ACCWGGT 1 cut(s) 300
MaeI CTAG 4 cut(s) 560, 747, 1133, 1686
MaeII ACGT 1 cut(s) 443
MaeIII GTNAC 6 cut(s) 55, 437, 482, 1128, 1403, 1688
MalI GATC 6 cut(s) 156, 381, 399, 503, 939, 1569
MbiI CCGCTC 1 cut(s) 259
MboI GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
MfeI CAATTG 1 cut(s) 1476
MflI RGATCY 3 cut(s) 154, 379, 501
MhlI GDGCHC 2 cut(s) 29, 735
MluCI AATT 9 cut(s) 587, 627, 804, 1023, 1059, 1337, 1476, 1626, 1696
MlyI GAGTC 3 cut(s) 340, 533, 977
MmeI TCCRAC 5 cut(s) 204, 375, 552, 1215, 1662
MroI TCCGGA 1 cut(s) 382
MseI TTAA 4 cut(s) 20, 683, 962, 1340
MslI CAYNNNNRTG 1 cut(s) 755
MspA1I CMGCKG 2 cut(s) 433, 671
MunI CAATTG 1 cut(s) 1476
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 3 cut(s) 284, 302, 1020
MvnI CGCG 3 cut(s) 104, 233, 1260
MwoI GCNNNNNNNGC 5 cut(s) 11, 188, 239, 460, 466
NdeII GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 6 cut(s) 404, 430, 575, 754, 1126, 1204
NlaIV GGNNCC 8 cut(s) 40, 41, 162, 270, 381, 557, 648, 1636
NmuCI GTSAC 2 cut(s) 437, 1403
NspI RCATGY 3 cut(s) 430, 575, 754
PaeI GCATGC 1 cut(s) 754
PaeR7I CTCGAG 1 cut(s) 464
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 1 cut(s) 994
PfeI GAWTC 2 cut(s) 719, 1469
PinAI ACCGGT 1 cut(s) 360
PleI GAGTC 3 cut(s) 340, 532, 976
PpsI GAGTC 3 cut(s) 340, 532, 976
Ppu21I YACGTR 1 cut(s) 444
PpuMI RGGWCCY 2 cut(s) 39, 647
PshAI GACNNNNGTC 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 29
Psp5II RGGWCCY 2 cut(s) 39, 647
Psp6I CCWGG 3 cut(s) 282, 300, 1018
PspFI CCCAGC 3 cut(s) 433, 454, 1144
PspGI CCWGG 3 cut(s) 282, 300, 1018
PspN4I GGNNCC 8 cut(s) 40, 41, 162, 270, 381, 557, 648, 1636
PspPI GGNCC 8 cut(s) 39, 46, 161, 181, 269, 358, 363, 647
PspPPI RGGWCCY 2 cut(s) 39, 647
PspXI VCTCGAGB 1 cut(s) 464
PsuI RGATCY 3 cut(s) 154, 379, 501
PvuII CAGCTG 2 cut(s) 433, 671
RsaI GTAC 5 cut(s) 425, 446, 557, 1334, 1493
RsaNI GTAC 5 cut(s) 424, 445, 556, 1333, 1492
RseI CAYNNNNRTG 1 cut(s) 755
SacI GAGCTC 1 cut(s) 29
SaqAI TTAA 4 cut(s) 20, 683, 962, 1340
Sau3AI GATC 6 cut(s) 154, 379, 397, 501, 937, 1567
Sau96I GGNCC 8 cut(s) 39, 46, 161, 181, 269, 358, 363, 647
SchI GAGTC 3 cut(s) 340, 533, 977
SduI GDGCHC 2 cut(s) 29, 735
SexAI ACCWGGT 1 cut(s) 300
SfaNI GCATC 3 cut(s) 441, 923, 1441
SfcI CTRYAG 4 cut(s) 319, 474, 607, 1245
Sfr274I CTCGAG 1 cut(s) 464
SinI GGWCC 6 cut(s) 39, 161, 269, 358, 363, 647
SlaI CTCGAG 1 cut(s) 464
SmaI CCCGGG 2 cut(s) 91, 185
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 4 cut(s) 464, 728, 994, 1382
SmoI CTYRAG 4 cut(s) 464, 728, 994, 1382
SpeI ACTAGT 1 cut(s) 1685
SphI GCATGC 1 cut(s) 754
Sse9I AATT 9 cut(s) 587, 627, 804, 1023, 1059, 1337, 1476, 1626, 1696
SspMI CTAG 4 cut(s) 560, 747, 1133, 1686
SstI GAGCTC 1 cut(s) 29
TaaI ACNGT 5 cut(s) 320, 677, 874, 983, 1241
TaiI ACGT 1 cut(s) 446
TaqI TCGA 5 cut(s) 144, 255, 449, 465, 1354
TasI AATT 9 cut(s) 587, 627, 804, 1023, 1059, 1337, 1476, 1626, 1696
TatI WGTACW 2 cut(s) 1332, 1491
TauI GCSGC 4 cut(s) 245, 311, 791, 1398
TfiI GAWTC 2 cut(s) 719, 1469
Tru1I TTAA 4 cut(s) 20, 683, 962, 1340
Tru9I TTAA 4 cut(s) 20, 683, 962, 1340
TscAI CASTG 1 cut(s) 1246
TseFI GTSAC 2 cut(s) 437, 1403
TseI GCWGC 6 cut(s) 5, 430, 460, 668, 1064, 1439
Tsp45I GTSAC 2 cut(s) 437, 1403
TspDTI ATGAA 7 cut(s) 609, 629, 732, 1089, 1139, 1667, 1682
TspGWI ACGGA 1 cut(s) 153
TspMI CCCGGG 2 cut(s) 89, 183
TspRI CASTG 1 cut(s) 1246
VpaK11BI GGWCC 6 cut(s) 39, 161, 269, 358, 363, 647
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 627
XceI RCATGY 3 cut(s) 430, 575, 754
XhoI CTCGAG 1 cut(s) 464
XmaI CCCGGG 2 cut(s) 89, 183
XmiI GTMKAC 1 cut(s) 884
XspI CTAG 4 cut(s) 560, 747, 1133, 1686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.