MD01G1083900.v1.1

nephrocystin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016392
Physical Location & Seq
Reverse (-)
19027848 .. 19031439
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1083900.v1.1.491

Sequence Viewer

Length: 1740 bp
ATGCCAGGCTTAGTCTCACCCAAAAGCTCGCCTCTTGGAGCACCTTCGCCGCCAATTTTCGTACCCGACCCGGCCCGCAAAACAGAGCACTCCAATGGCGCCAAAACCCCATCGCCTTCGACCACTCGGGCCAGACCTGCCAAAAAACCAGCCTCAGAGAAGCTACCCATCGACGAGACCTCGCTCGACAACCCGGATCTGGGTCCCTTTTTGCTGAAGCTCGCCCGGGACACTATTGGGTCGGGTGAGAACCCGAATAAGGCCTTGGACTACGCCATTCGGGCATCCAAGTCATTCGAGCGCTGCTCCGGTCCTGGTCTTGACCTGGCTATGAGCTTGCACGTAGTGGCGGCGATATATTGTAATTTGGGCCGGTTTGAGGAGGCGGTTCGGATCTTGGAGAGGTCCATTGAGGTGTCGGATCTGGAAAATGGGTCGGATCATGCGCTGGCAAAGTTCTCGGGGTACATGCAGCTGGGTGACACGTATTCGATGCTGGGACAGCTTGAGCAGTCTATTTTATGTTACGGGTCGGGTTTGAAGATCCAAAAGGAGACTCTGGGTGAGTCGGATCCGAGAGTTGCAGAAACTTGCAGGTACCTAGCAGAAGCCCATGTCCAAGTAATGCAATTCGACGAGGCGGAGAACTACTGTAAGAAGACGCTTGAAATCCGCAGGAAGCACAACTCGCCAGCGTCTGTTGAAGAGGCTGCTGACCGGCGTCTCTTGGCTCTCATTTATGAGGCAAAGGGAGATTACGAATCTGCACTTGAGCACCTTGTCCTTGCAAGCATGATAATGATTGCCAATGGACAGGACAATGAGGTTGCCGCTATTGACATGGGCATTGGCGATATTTACTTGTCTCTTTGCCGCTTTGATGAGGCTGTTTTCTCCTACCAGAAAGCACTTACTGTCTTGAAATCCATGAGGGGCGAGAATCACCCTTCAGTAGCATCCGTCTTTATTCGCCTTGCTGACCTGTATTACAAGACGGGTAAGTTAAGAGAGTCTAAATCCTACTGTGAGAATGCTTTGAGGATATATGCAAAACCTTTGCCTGGAATCGTACCCGAGGAACTTGCTAGCGGGTTGACTGAAATCGCAGCCATCTATGAAGCTGTCAATGAGCCGGAGGAGGCACTGAATCTCTTGCAGAAGGCGATGAAGTTATTAGATGATACACCTGCACAGAGGAGCTCTATCGCAGGAATAGAAGCACAGATGGGCGTTATGTTCTACATGGTCAGGAGGTACAGGGACGCTTGGACGTCTTTTGAGAGTGCTATATCAAAGCTTAGGGCCGGCGGGGAGAGGAAATCTGCCTATTTTGGTGTTGTGTTGAACCAGATGGGATTGGCTGGTGTGCAGTTGTACAAATTAGACGAGGCTGCTCAACTTTTTGAAGAAGCAAAGGAGATACTTGAGCAGGAGTGTGGCCTTTGTCACGCCGATACTCTTGGAGTGTATAGTAATCTTGCAGCCACATATGATGCCATGGGAAGAGTAGAAGCTGCAATTGAGATGTTGGAGCACGTCTTAAAGGTGAGGGAAGAGCAGCTTGGGACGGCAAATCCAGATTTTGACGACGAGAAGAAAAGGCTAGCTGATCTTTTGAAAGAAGCAGGAAGGGCAAGGAACAGAAAAGGAAAATCACTCGAAAATCTCCTCGAACCCAACTCCCAAAAGACGAAGAAGGAAGGATCGAAGAGGCGGTCTGGATTTGGATACAAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

580

Amino Acids

63.8

Weight (kDa)

5.65

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 84 - 139 7.7e-06 Tetratricopeptide repeat
TPR_12 PF13424 109 - 185 1.6e-09 Tetratricopeptide repeat
TPR_MalT PF17874 115 - 265 3.8e-11 MalT-like TPR region
TPR_12 PF13424 156 - 226 2e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 156 - 257 1.5e-07 Nephrocystin-3 TPR domain
TPR_12 PF13424 200 - 260 3.5e-08 Tetratricopeptide repeat
TPR_MalT PF17874 243 - 408 2.6e-09 MalT-like TPR region
TPR_NPHP3 PF24885 274 - 406 1e-07 Nephrocystin-3 TPR domain
TPR_12 PF13424 276 - 350 4.4e-10 Tetratricopeptide repeat
TPR_12 PF13424 320 - 392 1.1e-07 Tetratricopeptide repeat
TPR_12 PF13424 451 - 519 3.6e-09 Tetratricopeptide repeat
TPR_10 PF13374 486 - 527 2.1e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016392)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16910
malus_domestica MD01G1083900.v1.1 MD07G1152700.v1.1
prunus_persica Prupe.2G191200_v2.0.a1
pyrus_communis pycom07g15090
rosa_chinensis RchiOBHm_Chr1g0360141
rosa_laevigata RLG00000027827
rosa_multiflora Rmu_sc0007813.1_g000005 Rmu_ssc0000368.1_g000043
rosa_roxburghii Rroxscaffold_4G00296350
rosa_rugosa Rorug01G0275300
rosa_samantha Rh1AG289100 Rh1BG254800 Rh1DG284200
rosa_wichuraiana Rw1G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1195
AatII GACGTC 1 cut(s) 1274
Acc36I ACCTGC 3 cut(s) 145, 585, 1195
Acc65I GGTACC 1 cut(s) 597
AccB1I GGYRCC 2 cut(s) 98, 597
AclWI GGATC 8 cut(s) 204, 401, 429, 447, 538, 566, 579, 1711
AcuI CTGAAG 2 cut(s) 236, 933
AcyI GRCGYC 3 cut(s) 99, 721, 1271
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 6 cut(s) 63, 467, 599, 1071, 1256, 1376
AfeI AGCGCT 1 cut(s) 302
AfiI CCNNNNNNNGG 5 cut(s) 199, 200, 259, 379, 1061
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 7 cut(s) 541, 668, 704, 922, 1345, 1406, 1618
AjiI CACGTC 1 cut(s) 1537
AjnI CCWGG 4 cut(s) 4, 313, 324, 1060
AjuI GAANNNNNNNTTGG 4 cut(s) 248, 280, 1545, 1577
Alw21I GWGCWC 5 cut(s) 43, 90, 777, 1202, 1536
Alw26I GTCTC 5 cut(s) 19, 170, 548, 728, 870
AlwI GGATC 8 cut(s) 204, 401, 429, 447, 538, 566, 579, 1711
AlwNI CAGNNNCTG 1 cut(s) 698
Ama87I CYCGRG 4 cut(s) 126, 225, 460, 1073
Aor51HI AGCGCT 1 cut(s) 302
AoxI GGCC 6 cut(s) 72, 129, 261, 370, 1302, 1438
ApeKI GCWGC 8 cut(s) 303, 472, 710, 1106, 1391, 1481, 1514, 1558
ArsI GACNNNNNNTTYG 2 cut(s) 1700, 1732
Asp718I GGTACC 1 cut(s) 597
AspLEI GCGC 3 cut(s) 101, 303, 448
AspS9I GGNCC 7 cut(s) 73, 129, 203, 311, 370, 405, 1302
AsuC2I CCSGG 4 cut(s) 71, 194, 226, 227
AsuHPI GGTGA 6 cut(s) 9, 257, 491, 575, 935, 1558
AsuNHI GCTAGC 2 cut(s) 1085, 1603
AvaI CYCGRG 4 cut(s) 126, 225, 460, 1073
AvaII GGWCC 3 cut(s) 203, 311, 405
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 2 cut(s) 98, 597
BanII GRGCYC 1 cut(s) 1202
BbsI GAAGAC 1 cut(s) 665
Bbv12I GWGCWC 5 cut(s) 43, 90, 777, 1202, 1536
BbvI GCAGC 8 cut(s) 290, 484, 697, 1118, 1378, 1493, 1501, 1570
BccI CCATC 5 cut(s) 118, 176, 1118, 1219, 1345
BceAI ACGGC 1 cut(s) 1584
BcgI CGANNNNNNTGC 4 cut(s) 441, 475, 1064, 1098
BciT130I CCWGG 4 cut(s) 6, 315, 326, 1062
BciVI GTATCC 1 cut(s) 1721
BcnI CCSGG 4 cut(s) 71, 194, 226, 227
BcoDI GTCTC 5 cut(s) 19, 170, 548, 728, 870
BfaI CTAG 3 cut(s) 602, 1086, 1604
BfoI RGCGCY 2 cut(s) 102, 304
BfuAI ACCTGC 3 cut(s) 145, 585, 1195
BfuI GTATCC 1 cut(s) 1721
BglI GCCNNNNNGGC 1 cut(s) 281
Bme1390I CCNGG 8 cut(s) 6, 71, 194, 226, 227, 315, 326, 1062
Bme18I GGWCC 3 cut(s) 203, 311, 405
BmeT110I CYCGRG 4 cut(s) 126, 225, 460, 1073
BmgBI CACGTC 1 cut(s) 1537
BmgT120I GGNCC 7 cut(s) 73, 129, 203, 311, 370, 405, 1302
BmiI GGNNCC 5 cut(s) 100, 204, 205, 573, 599
BmrFI CCNGG 8 cut(s) 6, 71, 194, 226, 227, 315, 326, 1062
BmsI GCATC 4 cut(s) 293, 483, 965, 1483
BmtI GCTAGC 2 cut(s) 1089, 1607
BoxI GACNNNNGTC 1 cut(s) 720
BpiI GAAGAC 1 cut(s) 665
BplI GAGNNNNNCTC 2 cut(s) 290, 322
Bpu10I CCTNAGC 1 cut(s) 1298
BpuEI CTTGAG 3 cut(s) 527, 791, 1445
BpuMI CCSGG 4 cut(s) 71, 194, 226, 227
BsaAI YACGTR 2 cut(s) 343, 486
BsaHI GRCGYC 3 cut(s) 99, 721, 1271
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 225, 264, 1074, 1497
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 5 cut(s) 199, 200, 259, 379, 1061
Bse118I RCCGGY 3 cut(s) 372, 717, 1304
BseBI CCWGG 4 cut(s) 6, 315, 326, 1062
BseDI CCNNGG 4 cut(s) 225, 264, 1074, 1497
BseGI GGATG 2 cut(s) 284, 956
BseLI CCNNNNNNNGG 5 cut(s) 199, 200, 259, 379, 1061
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 4 cut(s) 395, 1151, 1210, 1658
BseXI GCAGC 8 cut(s) 290, 484, 697, 1118, 1378, 1493, 1501, 1570
BseYI CCCAGC 2 cut(s) 475, 496
BsgI GTGCAG 3 cut(s) 750, 1173, 1388
BshFI GGCC 6 cut(s) 74, 131, 263, 372, 1304, 1440
BshNI GGYRCC 2 cut(s) 98, 597
BsiHKAI GWGCWC 5 cut(s) 43, 90, 777, 1202, 1536
BsiHKCI CYCGRG 4 cut(s) 126, 225, 460, 1073
BsiSI CCGG 8 cut(s) 71, 194, 226, 309, 373, 718, 1133, 1305
BslFI GGGAC 5 cut(s) 189, 242, 513, 1274, 1579
BslI CCNNNNNNNGG 5 cut(s) 199, 200, 259, 379, 1061
BsmAI GTCTC 5 cut(s) 19, 170, 548, 728, 870
BsmBI CGTCTC 1 cut(s) 728
BsmFI GGGAC 5 cut(s) 189, 242, 513, 1274, 1579
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 6 cut(s) 74, 131, 263, 372, 1304, 1440
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 4 cut(s) 126, 225, 460, 1073
Bsp1286I GDGCHC 5 cut(s) 43, 90, 777, 1202, 1536
Bsp1407I TGTACA 1 cut(s) 1374
Bsp143I GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
Bsp19I CCATGG 1 cut(s) 1497
BspANI GGCC 6 cut(s) 74, 131, 263, 372, 1304, 1440
BspCNI CTCAG 1 cut(s) 167
BspLI GGNNCC 5 cut(s) 100, 204, 205, 573, 599
BspMI ACCTGC 3 cut(s) 145, 585, 1195
BspOI GCTAGC 2 cut(s) 1089, 1607
BspPI GGATC 8 cut(s) 204, 401, 429, 447, 538, 566, 579, 1711
BspQI GCTCTTC 1 cut(s) 1548
BspT107I GGYRCC 2 cut(s) 98, 597
BspTNI GGTCTC 1 cut(s) 170
BsrFI RCCGGY 3 cut(s) 372, 717, 1304
BsrGI TGTACA 1 cut(s) 1374
BssAI RCCGGY 3 cut(s) 372, 717, 1304
BssECI CCNNGG 4 cut(s) 225, 264, 1074, 1497
BssMI GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
BssNI GRCGYC 3 cut(s) 99, 721, 1271
BssT1I CCWWGG 2 cut(s) 264, 1497
Bst2UI CCWGG 4 cut(s) 6, 315, 326, 1062
Bst4CI ACNGT 3 cut(s) 653, 916, 1025
Bst6I CTCTTC 4 cut(s) 699, 1498, 1548, 1703
BstACI GRCGYC 3 cut(s) 99, 721, 1271
BstAUI TGTACA 1 cut(s) 1374
BstBAI YACGTR 2 cut(s) 343, 486
BstDEI CTNAG 3 cut(s) 10, 154, 1298
BstDSI CCRYGG 1 cut(s) 1497
BstF5I GGATG 2 cut(s) 284, 956
BstH2I RGCGCY 2 cut(s) 102, 304
BstHHI GCGC 3 cut(s) 101, 303, 448
BstKTI GATC 8 cut(s) 199, 396, 424, 442, 546, 574, 1612, 1706
BstMAI GTCTC 5 cut(s) 19, 170, 548, 728, 870
BstMBI GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
BstMWI GCNNNNNNNGC 5 cut(s) 137, 281, 502, 688, 1631
BstNI CCWGG 4 cut(s) 6, 315, 326, 1062
BstNSI RCATGY 1 cut(s) 472
BstPAI GACNNNNGTC 1 cut(s) 720
BstSCI CCNGG 8 cut(s) 4, 69, 192, 224, 225, 313, 324, 1060
BstV1I GCAGC 8 cut(s) 290, 484, 697, 1118, 1378, 1493, 1501, 1570
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 5 cut(s) 196, 393, 421, 543, 571
BstYI RGATCY 5 cut(s) 196, 393, 421, 543, 571
BsuI GTATCC 1 cut(s) 1721
BsuRI GGCC 6 cut(s) 74, 131, 263, 372, 1304, 1440
BtgI CCRYGG 1 cut(s) 1497
BtgZI GCGATG 2 cut(s) 96, 1178
BtrI CACGTC 1 cut(s) 1537
BtsCI GGATG 2 cut(s) 284, 956
BtsIMutI CAGTG 1 cut(s) 1142
BveI ACCTGC 3 cut(s) 145, 585, 1195
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 3 cut(s) 101, 303, 448
Cfr10I RCCGGY 3 cut(s) 372, 717, 1304
Cfr13I GGNCC 7 cut(s) 73, 129, 203, 311, 370, 405, 1302
Cfr9I CCCGGG 1 cut(s) 225
CseI GACGC 4 cut(s) 670, 684, 710, 1271
Csp6I GTAC 6 cut(s) 62, 466, 598, 1070, 1255, 1375
CviAII CATG 8 cut(s) 443, 469, 614, 793, 841, 928, 1243, 1498
CviQI GTAC 6 cut(s) 62, 466, 598, 1070, 1255, 1375
DdeI CTNAG 3 cut(s) 10, 154, 1298
DinI GGCGCC 1 cut(s) 100
DpnI GATC 8 cut(s) 198, 395, 423, 441, 545, 573, 1611, 1705
DpnII GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
DraIII CACNNNGTG 1 cut(s) 346
Eam1104I CTCTTC 4 cut(s) 699, 1498, 1548, 1703
EarI CTCTTC 4 cut(s) 699, 1498, 1548, 1703
EciI GGCGGA 1 cut(s) 656
Ecl136II GAGCTC 1 cut(s) 1200
Eco130I CCWWGG 2 cut(s) 264, 1497
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 1202
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 3 cut(s) 203, 311, 405
Eco47III AGCGCT 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 1200
Eco57I CTGAAG 2 cut(s) 236, 933
Eco88I CYCGRG 4 cut(s) 126, 225, 460, 1073
EcoICRI GAGCTC 1 cut(s) 1200
EcoO109I RGGNCCY 1 cut(s) 203
EcoRII CCWGG 4 cut(s) 4, 313, 324, 1060
EcoT14I CCWWGG 2 cut(s) 264, 1497
EcoT38I GRGCYC 1 cut(s) 1202
EgeI GGCGCC 1 cut(s) 100
EheI GGCGCC 1 cut(s) 100
ErhI CCWWGG 2 cut(s) 264, 1497
Esp3I CGTCTC 1 cut(s) 728
FaeI CATG 8 cut(s) 446, 472, 617, 796, 844, 931, 1246, 1501
FalI AAGNNNNNCTT 2 cut(s) 1545, 1577
FaqI GGGAC 5 cut(s) 189, 242, 513, 1274, 1579
FatI CATG 8 cut(s) 442, 468, 613, 792, 840, 927, 1242, 1497
FauI CCCGC 3 cut(s) 83, 1082, 1301
FauNDI CATATG 1 cut(s) 1489
FokI GGATG 2 cut(s) 271, 943
FriOI GRGCYC 1 cut(s) 1202
FspBI CTAG 3 cut(s) 602, 1086, 1604
GlaI GCGC 3 cut(s) 100, 302, 447
GsaI CCCAGC 2 cut(s) 479, 500
HaeII RGCGCY 2 cut(s) 102, 304
HaeIII GGCC 6 cut(s) 74, 131, 263, 372, 1304, 1440
HapII CCGG 8 cut(s) 71, 194, 226, 309, 373, 718, 1133, 1305
HgaI GACGC 4 cut(s) 670, 684, 710, 1271
HhaI GCGC 3 cut(s) 101, 303, 448
Hin1I GRCGYC 3 cut(s) 99, 721, 1271
Hin1II CATG 8 cut(s) 446, 472, 617, 796, 844, 931, 1246, 1501
Hin6I GCGC 3 cut(s) 99, 301, 446
HinP1I GCGC 3 cut(s) 99, 301, 446
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HindIII AAGCTT 1 cut(s) 1295
HinfI GANTC 7 cut(s) 556, 566, 761, 940, 1010, 1065, 1147
HpaII CCGG 8 cut(s) 71, 194, 226, 309, 373, 718, 1133, 1305
HphI GGTGA 6 cut(s) 9, 257, 491, 575, 935, 1558
Hpy166II GTNNAC 1 cut(s) 1095
Hpy188I TCNGA 6 cut(s) 157, 393, 421, 439, 571, 576
Hpy188III TCNNGA 6 cut(s) 320, 425, 919, 1249, 1577, 1719
Hpy8I GTNNAC 1 cut(s) 1095
Hpy99I CGWCG 3 cut(s) 176, 638, 1592
HpyAV CCTTC 7 cut(s) 54, 126, 957, 1153, 1623, 1690, 1694
HpyCH4III ACNGT 3 cut(s) 653, 916, 1025
HpyCH4IV ACGT 4 cut(s) 342, 485, 1271, 1536
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 281, 502, 688, 1631
HpyF3I CTNAG 3 cut(s) 10, 154, 1298
HpySE526I ACGT 4 cut(s) 342, 485, 1271, 1536
Hsp92I GRCGYC 3 cut(s) 99, 721, 1271
Hsp92II CATG 8 cut(s) 446, 472, 617, 796, 844, 931, 1246, 1501
HspAI GCGC 3 cut(s) 99, 301, 446
KasI GGCGCC 1 cut(s) 98
KflI GGGWCCC 1 cut(s) 203
KpnI GGTACC 1 cut(s) 601
KroI GCCGGC 1 cut(s) 1304
KroNI GCCGGC 1 cut(s) 1306
Kzo9I GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
LguI GCTCTTC 1 cut(s) 1548
LmnI GCTCC 4 cut(s) 38, 311, 1197, 1531
Lsp1109I GCAGC 8 cut(s) 290, 484, 697, 1118, 1378, 1493, 1501, 1570
LweI GCATC 4 cut(s) 293, 483, 965, 1483
MaeI CTAG 3 cut(s) 602, 1086, 1604
MaeII ACGT 4 cut(s) 342, 485, 1271, 1536
MaeIII GTNAC 3 cut(s) 479, 524, 1445
MalI GATC 8 cut(s) 198, 395, 423, 441, 545, 573, 1611, 1705
MboI GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
MboII GAAGA 9 cut(s) 553, 670, 716, 1418, 1515, 1565, 1606, 1705, 1720
MfeI CAATTG 1 cut(s) 1518
MflI RGATCY 5 cut(s) 196, 393, 421, 543, 571
MhlI GDGCHC 5 cut(s) 43, 90, 777, 1202, 1536
MluCI AATT 5 cut(s) 54, 364, 629, 1379, 1518
Mly113I GGCGCC 1 cut(s) 99
MlyI GAGTC 3 cut(s) 550, 575, 1019
MmeI TCCRAC 4 cut(s) 399, 417, 549, 1509
MroNI GCCGGC 1 cut(s) 1304
MseI TTAA 2 cut(s) 1004, 1541
MslI CAYNNNNRTG 3 cut(s) 93, 413, 797
MspA1I CMGCKG 1 cut(s) 475
MspI CCGG 8 cut(s) 71, 194, 226, 309, 373, 718, 1133, 1305
MspR9I CCNGG 8 cut(s) 6, 71, 194, 226, 227, 315, 326, 1062
MunI CAATTG 1 cut(s) 1518
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 4 cut(s) 6, 315, 326, 1062
MwoI GCNNNNNNNGC 5 cut(s) 137, 281, 502, 688, 1631
NaeI GCCGGC 1 cut(s) 1306
NarI GGCGCC 1 cut(s) 99
NciI CCSGG 4 cut(s) 71, 194, 226, 227
NcoI CCATGG 1 cut(s) 1497
NdeI CATATG 1 cut(s) 1489
NdeII GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
NgoMIV GCCGGC 1 cut(s) 1304
NheI GCTAGC 2 cut(s) 1085, 1603
NlaIII CATG 8 cut(s) 446, 472, 617, 796, 844, 931, 1246, 1501
NlaIV GGNNCC 5 cut(s) 100, 204, 205, 573, 599
NmuCI GTSAC 2 cut(s) 479, 1445
NspI RCATGY 1 cut(s) 472
PaqCI CACCTGC 1 cut(s) 1195
PceI AGGCCT 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 1548
PctI GAATGC 1 cut(s) 1036
PdiI GCCGGC 1 cut(s) 1306
PfeI GAWTC 4 cut(s) 761, 940, 1065, 1147
PleI GAGTC 3 cut(s) 550, 574, 1018
PluTI GGCGCC 1 cut(s) 102
PpsI GAGTC 3 cut(s) 550, 574, 1018
Ppu21I YACGTR 2 cut(s) 343, 486
PpuMI RGGWCCY 1 cut(s) 203
PshAI GACNNNNGTC 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 1202
Psp5II RGGWCCY 1 cut(s) 203
Psp6I CCWGG 4 cut(s) 4, 313, 324, 1060
PspFI CCCAGC 2 cut(s) 475, 496
PspGI CCWGG 4 cut(s) 4, 313, 324, 1060
PspN4I GGNNCC 5 cut(s) 100, 204, 205, 573, 599
PspPI GGNCC 7 cut(s) 73, 129, 203, 311, 370, 405, 1302
PspPPI RGGWCCY 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 5 cut(s) 196, 393, 421, 543, 571
PvuII CAGCTG 1 cut(s) 475
RsaI GTAC 6 cut(s) 63, 467, 599, 1071, 1256, 1376
RsaNI GTAC 6 cut(s) 62, 466, 598, 1070, 1255, 1375
RseI CAYNNNNRTG 3 cut(s) 93, 413, 797
SacI GAGCTC 1 cut(s) 1202
SapI GCTCTTC 1 cut(s) 1548
SaqAI TTAA 2 cut(s) 1004, 1541
Sau3AI GATC 8 cut(s) 196, 393, 421, 439, 543, 571, 1609, 1703
Sau96I GGNCC 7 cut(s) 73, 129, 203, 311, 370, 405, 1302
SchI GAGTC 3 cut(s) 550, 575, 1019
ScrFI CCNGG 8 cut(s) 6, 71, 194, 226, 227, 315, 326, 1062
SduI GDGCHC 5 cut(s) 43, 90, 777, 1202, 1536
SfaNI GCATC 4 cut(s) 293, 483, 965, 1483
SfoI GGCGCC 1 cut(s) 100
SinI GGWCC 3 cut(s) 203, 311, 405
SmaI CCCGGG 1 cut(s) 227
SmiMI CAYNNNNRTG 3 cut(s) 93, 413, 797
SmlI CTYRAG 3 cut(s) 506, 770, 1424
SmoI CTYRAG 3 cut(s) 506, 770, 1424
Sse9I AATT 5 cut(s) 54, 364, 629, 1379, 1518
SseBI AGGCCT 1 cut(s) 263
SspDI GGCGCC 1 cut(s) 98
SspMI CTAG 3 cut(s) 602, 1086, 1604
SstI GAGCTC 1 cut(s) 1202
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 8 cut(s) 4, 69, 192, 224, 225, 313, 324, 1060
StyI CCWWGG 2 cut(s) 264, 1497
TaaI ACNGT 3 cut(s) 653, 916, 1025
TaiI ACGT 4 cut(s) 345, 488, 1274, 1539
TaqI TCGA 9 cut(s) 119, 171, 186, 297, 491, 633, 1659, 1671, 1706
TasI AATT 5 cut(s) 54, 364, 629, 1379, 1518
TatI WGTACW 1 cut(s) 1374
TauI GCSGC 4 cut(s) 52, 353, 833, 876
TfiI GAWTC 4 cut(s) 761, 940, 1065, 1147
Tru1I TTAA 2 cut(s) 1004, 1541
Tru9I TTAA 2 cut(s) 1004, 1541
TscAI CASTG 1 cut(s) 1149
TseFI GTSAC 2 cut(s) 479, 1445
TseI GCWGC 8 cut(s) 303, 472, 710, 1106, 1391, 1481, 1514, 1558
Tsp45I GTSAC 2 cut(s) 479, 1445
TspDTI ATGAA 2 cut(s) 1131, 1181
TspGWI ACGGA 1 cut(s) 949
TspMI CCCGGG 1 cut(s) 225
TspRI CASTG 1 cut(s) 1149
VpaK11BI GGWCC 3 cut(s) 203, 311, 405
XceI RCATGY 1 cut(s) 472
XmaI CCCGGG 1 cut(s) 225
XspI CTAG 3 cut(s) 602, 1086, 1604
ZraI GACGTC 1 cut(s) 1272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.