RchiOBHm_Chr1g0360141

nephrocystin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016392
Physical Location & Seq
Reverse (-)
51937185 .. 51940603
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58516

Sequence Viewer

Length: 1737 bp
ATGTCAGCTTTGGTGTCGCTGAAGACGTCGCCTTTGAGGACGCCGGGGCGGTCGGTGATCGGACCCGACCCGGTTCACTCAAACGGGTCGAATGGCTTCACCAAAACCCCGTCGCCGTCCGGCTCAAGAGCCCGACCCGCCAAAAAGGCCGCCGCCCAGCCCGTCGACGAGGCCTCGCTGGACAACCCGGATCTGGGTCCCTTCCTGCTGAAGCTCGCCAGAGAGACGGTCGGGTCGGGCGAGAACCCGAACAAGGCCTTGGACTACGCTGTTCGGGCCTCCAAGTCGTTCGAGCTGTGTTCGGGTCCCGGCCTTGACCTGGCCATGAGCCTGCACCTGGTGGCGGCGATCTACTGTAGCTTGGGCCGGTTTGAGGAGGCGACTCGGGTTCTGGAGCGGTCCATTGAGGTCTCGGATCCCGAAAACGGGTCGGACCATGCTCTGGCTAAGTTCTCCGGCTACATGCAGCTGGGTGACACGTACTCTATGCTGGGACAGCTTGAGCAGTCTATATTGTGCTACGGGTCGGGTCTGAAGATCCAGATGGACACTCTCGGTGAGTCCGACCCGAGAGTTGCCGAGACTTGCAGGTACCTAGCGGAGGCACATGTCCAAGTTATGCAATTTGATGAAGCAGAGAACTATAGTATGAAGACTCTTGAAATTCACAGGGAGCATAAGGGACCTGCGTCTATTGAAGAAGCTGCTGACCGTCGTCTCATGGCTCTCATCTATGAGGCAAAGGGAGATTATGAATCTGCGCTTGAGCACCTTGTCCTTGCTAGCATGCTAATGATTGCCAATGGGCAAGACAATGAGGTTGCCGCTATTGATATGGGGATTGGTGACATTTACTTGTCTCTTTGTCGCTTTGACGAGGCTGTTTTCTCCTACCAGAAAGCGCTCACAGTCTTCAAATCTACAAGGGGTGAAAATCATCCTTCTGTGGCATCAGTCTTTATTCGCCTTGCTGATCTGTATTACAAGACAGGGAAGTTAAGAGAGTCTAAATCCTACTGTGAGAATGCCTTGAGGATATATGCTAAACCTTTGCCCGGAATTGTCTCCGAGGAAATTGCCACCGGGTTGACTGAAATTGCAGCCATTTATGAAGCTGTGAATGAGCCTGAAGAGGCACTAAAGCTCTTGCAAAAGGCCATGAAGTTACTGGAGGATACCCCTGCACACCGGAGCACTATTGCAGGAATAGAAGCACAGATGGGGGTTATGTTCTACATGCTTGGGAGGTTTGGGGAAGCTTGGAGTTCATTGGACAGTGCTATAGAGAAGCTTCGGGCCAGCGGGGAGAGGAAATCAGCCTATTTTGGTATTGTGCTGAACCAATTGGGATTGTCTTGTGTGCAGTTATACAAATTAGGTGAGGCTGCTCGACTCTTTGAAGAAGCAAGGGATATACTTGAGCAGGAGTGCGGCATTTGTCACTTGGATACTCTTGGAGTATATAGCAACCTTGCAGCAACTTATGATGCCATGGGAAGGGTAGAATCTGCAATTGAGATATTAGAGTACATTCTGAAGGTGAGGGAAGAAAAGCTTGGGACGGCAAATCCAGATGTTGATGATGAGAAGAAAAGATTAGCTGATCTCTTGAAAGAAGCAGGAAGGGCGCGGAACAGAAAGGGAAAATCGCTTGAAAATCTACTCGGTGGCTCCAACTCCCAAAGGATGAAGAAGGATGGAATGAAGAAGTGGTCTGGAACTAGTTTCAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

578

Amino Acids

63.32

Weight (kDa)

5.48

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 107 - 180 1.2e-08 Tetratricopeptide repeat
TPR_MalT PF17874 112 - 265 7.4e-09 MalT-like TPR region
TPR_NPHP3 PF24885 154 - 254 2.4e-07 Nephrocystin-3 TPR domain
TPR_12 PF13424 198 - 258 2.8e-07 Tetratricopeptide repeat
TPR_MalT PF17874 241 - 407 2.4e-11 MalT-like TPR region
TPR_NPHP3 PF24885 272 - 403 2.1e-08 Nephrocystin-3 TPR domain
TPR_12 PF13424 274 - 348 1.1e-11 Tetratricopeptide repeat
TPR_12 PF13424 316 - 391 3.3e-10 Tetratricopeptide repeat
TPR_12 PF13424 444 - 516 7.9e-08 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016392)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16910
malus_domestica MD01G1083900.v1.1 MD07G1152700.v1.1
prunus_persica Prupe.2G191200_v2.0.a1
pyrus_communis pycom07g15090
rosa_chinensis RchiOBHm_Chr1g0360141
rosa_laevigata RLG00000027827
rosa_multiflora Rmu_sc0007813.1_g000005 Rmu_ssc0000368.1_g000043
rosa_roxburghii Rroxscaffold_4G00296350
rosa_rugosa Rorug01G0275300
rosa_samantha Rh1AG289100 Rh1BG254800 Rh1DG284200
rosa_wichuraiana Rw1G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AatII GACGTC 1 cut(s) 29
Acc36I ACCTGC 2 cut(s) 579, 694
Acc65I GGTACC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 591
AccB7I CCANNNNNTGG 1 cut(s) 442
AccBSI CCGCTC 1 cut(s) 397
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 1630
AclWI GGATC 4 cut(s) 198, 410, 423, 532
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 663
AcuI CTGAAG 5 cut(s) 41, 230, 554, 1149, 1556
AcyI GRCGYC 2 cut(s) 26, 41
AdeI CACNNNGTG 1 cut(s) 340
AfaI GTAC 3 cut(s) 482, 593, 1529
AfeI AGCGCT 1 cut(s) 903
AflIII ACRYGT 2 cut(s) 477, 607
AgsI TTSAA 7 cut(s) 662, 698, 916, 1400, 1612, 1655, 1729
AhlI ACTAGT 1 cut(s) 1721
AjnI CCWGG 2 cut(s) 318, 336
AjuI GAANNNNNNNTTGG 4 cut(s) 242, 274, 1539, 1571
Alw21I GWGCWC 2 cut(s) 771, 1196
Alw26I GTCTC 6 cut(s) 218, 415, 575, 722, 864, 1069
AlwI GGATC 4 cut(s) 198, 410, 423, 532
Ama87I CYCGRG 2 cut(s) 384, 568
Aor51HI AGCGCT 1 cut(s) 903
AoxI GGCC 9 cut(s) 147, 171, 255, 276, 310, 321, 364, 1155, 1296
ApeKI GCWGC 5 cut(s) 466, 704, 1100, 1385, 1475
ApoI RAATTY 1 cut(s) 663
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 591
AspLEI GCGC 3 cut(s) 763, 904, 1630
AspS9I GGNCC 9 cut(s) 62, 197, 276, 305, 364, 399, 433, 683, 1296
AsuC2I CCSGG 6 cut(s) 45, 71, 188, 309, 1056, 1084
AsuHPI GGTGA 8 cut(s) 67, 91, 485, 569, 857, 941, 1391, 1552
AsuNHI GCTAGC 1 cut(s) 782
AvaI CYCGRG 2 cut(s) 384, 568
AvaII GGWCC 6 cut(s) 62, 197, 305, 399, 433, 683
BalI TGGCCA 1 cut(s) 323
BamHI GGATCC 1 cut(s) 415
BanI GGYRCC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 133
BbsI GAAGAC 3 cut(s) 29, 659, 904
Bbv12I GWGCWC 2 cut(s) 771, 1196
BbvI GCAGC 5 cut(s) 478, 691, 1112, 1372, 1487
BccI CCATC 3 cut(s) 538, 1213, 1691
BceAI ACGGC 2 cut(s) 100, 1578
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 2 cut(s) 320, 338
BciVI GTATCC 2 cut(s) 1168, 1441
BcnI CCSGG 6 cut(s) 45, 71, 188, 309, 1056, 1084
BcoDI GTCTC 6 cut(s) 218, 415, 575, 722, 864, 1069
BcuI ACTAGT 1 cut(s) 1721
BfaI CTAG 3 cut(s) 596, 783, 1722
BfmI CTRYAG 3 cut(s) 355, 643, 1281
BfoI RGCGCY 1 cut(s) 905
BfuAI ACCTGC 2 cut(s) 579, 694
BfuI GTATCC 2 cut(s) 1168, 1441
BglI GCCNNNNNGGC 1 cut(s) 146
Bme1390I CCNGG 8 cut(s) 45, 71, 188, 309, 320, 338, 1056, 1084
Bme18I GGWCC 6 cut(s) 62, 197, 305, 399, 433, 683
BmeT110I CYCGRG 2 cut(s) 384, 568
BmgT120I GGNCC 9 cut(s) 62, 197, 276, 305, 364, 399, 433, 683, 1296
BmiI GGNNCC 9 cut(s) 64, 198, 199, 306, 307, 417, 593, 684, 1672
BmrFI CCNGG 8 cut(s) 45, 71, 188, 309, 320, 338, 1056, 1084
BmsI GCATC 2 cut(s) 959, 1477
BmtI GCTAGC 1 cut(s) 786
BoxI GACNNNNGTC 2 cut(s) 688, 714
BpiI GAAGAC 3 cut(s) 29, 659, 904
BpmI CTGGAG 2 cut(s) 413, 1190
BpuEI CTTGAG 5 cut(s) 109, 521, 785, 1051, 1439
BpuMI CCSGG 6 cut(s) 45, 71, 188, 309, 1056, 1084
BsaAI YACGTR 1 cut(s) 480
BsaHI GRCGYC 2 cut(s) 26, 41
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 4 cut(s) 44, 258, 1068, 1491
BsaWI WCCGGW 1 cut(s) 1188
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 1173
BseBI CCWGG 2 cut(s) 320, 338
BseDI CCNNGG 4 cut(s) 44, 258, 1068, 1491
BseGI GGATG 3 cut(s) 937, 1692, 1702
BseNI ACTGG 1 cut(s) 1173
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 5 cut(s) 478, 691, 1112, 1372, 1487
BseYI CCCAGC 3 cut(s) 156, 469, 490
BsgI GTGCAG 3 cut(s) 317, 1167, 1382
Bsh1236I CGCG 1 cut(s) 1630
Bsh1285I CGRYCG 2 cut(s) 53, 231
BshFI GGCC 9 cut(s) 149, 173, 257, 278, 312, 323, 366, 1157, 1298
BshNI GGYRCC 1 cut(s) 591
BsiEI CGRYCG 2 cut(s) 53, 231
BsiHKAI GWGCWC 2 cut(s) 771, 1196
BsiHKCI CYCGRG 2 cut(s) 384, 568
BslFI GGGAC 5 cut(s) 183, 291, 507, 696, 1573
BsmAI GTCTC 6 cut(s) 218, 415, 575, 722, 864, 1069
BsmBI CGTCTC 2 cut(s) 218, 722
BsmFI GGGAC 5 cut(s) 183, 291, 507, 696, 1573
BsmI GAATGC 1 cut(s) 1030
BsnI GGCC 9 cut(s) 149, 173, 257, 278, 312, 323, 366, 1157, 1298
Bso31I GGTCTC 1 cut(s) 415
BsoBI CYCGRG 2 cut(s) 384, 568
Bsp1286I GDGCHC 3 cut(s) 133, 771, 1196
Bsp143I GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
Bsp19I CCATGG 1 cut(s) 1491
BspANI GGCC 9 cut(s) 149, 173, 257, 278, 312, 323, 366, 1157, 1298
BspFNI CGCG 1 cut(s) 1630
BspLI GGNNCC 9 cut(s) 64, 198, 199, 306, 307, 417, 593, 684, 1672
BspMI ACCTGC 2 cut(s) 579, 694
BspOI GCTAGC 1 cut(s) 786
BspPI GGATC 4 cut(s) 198, 410, 423, 532
BspT107I GGYRCC 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 415
BsrBI CCGCTC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 1173
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 4 cut(s) 44, 258, 1068, 1491
BssMI GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
BssNI GRCGYC 2 cut(s) 26, 41
BssT1I CCWWGG 2 cut(s) 258, 1491
Bst2UI CCWGG 2 cut(s) 320, 338
Bst4CI ACNGT 6 cut(s) 229, 356, 713, 910, 1019, 1277
Bst6I CTCTTC 1 cut(s) 1125
BstACI GRCGYC 2 cut(s) 26, 41
BstBAI YACGTR 1 cut(s) 480
BstC8I GCNNGC 5 cut(s) 216, 332, 784, 788, 1300
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 1 cut(s) 1491
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 3 cut(s) 937, 1692, 1702
BstFNI CGCG 1 cut(s) 1630
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 3 cut(s) 763, 904, 1630
BstKTI GATC 7 cut(s) 60, 193, 351, 418, 540, 976, 1606
BstMAI GTCTC 6 cut(s) 218, 415, 575, 722, 864, 1069
BstMBI GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
BstMCI CGRYCG 2 cut(s) 53, 231
BstMWI GCNNNNNNNGC 5 cut(s) 137, 146, 275, 496, 1625
BstNI CCWGG 2 cut(s) 320, 338
BstNSI RCATGY 4 cut(s) 466, 611, 790, 1240
BstPAI GACNNNNGTC 2 cut(s) 688, 714
BstSCI CCNGG 8 cut(s) 43, 69, 186, 307, 318, 336, 1054, 1082
BstSFI CTRYAG 3 cut(s) 355, 643, 1281
BstUI CGCG 1 cut(s) 1630
BstV1I GCAGC 5 cut(s) 478, 691, 1112, 1372, 1487
BstV2I GAAGAC 3 cut(s) 29, 659, 904
BstX2I RGATCY 3 cut(s) 190, 415, 537
BstYI RGATCY 3 cut(s) 190, 415, 537
BsuI GTATCC 2 cut(s) 1168, 1441
BsuRI GGCC 9 cut(s) 149, 173, 257, 278, 312, 323, 366, 1157, 1298
BtgI CCRYGG 1 cut(s) 1491
BtsCI GGATG 3 cut(s) 937, 1692, 1702
BtsIMutI CAGTG 1 cut(s) 1282
BveI ACCTGC 2 cut(s) 579, 694
Cac8I GCNNGC 5 cut(s) 216, 332, 784, 788, 1300
CfoI GCGC 3 cut(s) 763, 904, 1630
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 9 cut(s) 62, 197, 276, 305, 364, 399, 433, 683, 1296
CseI GACGC 2 cut(s) 49, 678
CsiI ACCWGGT 1 cut(s) 336
Csp6I GTAC 3 cut(s) 481, 592, 1528
CviAII CATG 9 cut(s) 325, 437, 463, 608, 721, 787, 1159, 1237, 1492
CviQI GTAC 3 cut(s) 481, 592, 1528
DdeI CTNAG 1 cut(s) 447
DpnI GATC 7 cut(s) 59, 192, 350, 417, 539, 975, 1605
DpnII GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
DraIII CACNNNGTG 1 cut(s) 340
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 1125
EarI CTCTTC 1 cut(s) 1125
Eco130I CCWWGG 2 cut(s) 258, 1491
Eco147I AGGCCT 2 cut(s) 173, 257
Eco24I GRGCYC 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 415
Eco47I GGWCC 6 cut(s) 62, 197, 305, 399, 433, 683
Eco47III AGCGCT 1 cut(s) 903
Eco57I CTGAAG 5 cut(s) 41, 230, 554, 1149, 1556
Eco88I CYCGRG 2 cut(s) 384, 568
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 3 cut(s) 197, 305, 683
EcoRII CCWGG 2 cut(s) 318, 336
EcoT14I CCWWGG 2 cut(s) 258, 1491
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 258, 1491
Esp3I CGTCTC 2 cut(s) 218, 722
FaeI CATG 9 cut(s) 328, 440, 466, 611, 724, 790, 1162, 1240, 1495
FalI AAGNNNNNCTT 2 cut(s) 1539, 1571
FaqI GGGAC 5 cut(s) 183, 291, 507, 696, 1573
FatI CATG 9 cut(s) 324, 436, 462, 607, 720, 786, 1158, 1236, 1491
FauI CCCGC 2 cut(s) 145, 1295
FblI GTMKAC 1 cut(s) 165
FokI GGATG 3 cut(s) 924, 1699, 1709
FriOI GRGCYC 1 cut(s) 133
FspBI CTAG 3 cut(s) 596, 783, 1722
GlaI GCGC 3 cut(s) 762, 903, 1629
GsaI CCCAGC 3 cut(s) 160, 473, 494
GsuI CTGGAG 2 cut(s) 413, 1190
HaeII RGCGCY 1 cut(s) 905
HaeIII GGCC 9 cut(s) 149, 173, 257, 278, 312, 323, 366, 1157, 1298
HgaI GACGC 2 cut(s) 49, 678
HhaI GCGC 3 cut(s) 763, 904, 1630
Hin1I GRCGYC 2 cut(s) 26, 41
Hin1II CATG 9 cut(s) 328, 440, 466, 611, 724, 790, 1162, 1240, 1495
Hin6I GCGC 3 cut(s) 761, 902, 1628
HinP1I GCGC 3 cut(s) 761, 902, 1628
HincII GTYRAC 2 cut(s) 166, 1089
HindII GTYRAC 2 cut(s) 166, 1089
HindIII AAGCTT 3 cut(s) 1257, 1289, 1553
HinfI GANTC 7 cut(s) 382, 560, 655, 755, 1004, 1392, 1505
HphI GGTGA 8 cut(s) 67, 91, 485, 569, 857, 941, 1391, 1552
Hpy166II GTNNAC 3 cut(s) 76, 166, 1089
Hpy188I TCNGA 7 cut(s) 62, 415, 433, 534, 565, 1069, 1536
Hpy188III TCNNGA 8 cut(s) 126, 392, 419, 541, 659, 1571, 1609, 1716
Hpy8I GTNNAC 3 cut(s) 76, 166, 1089
Hpy99I CGWCG 5 cut(s) 31, 115, 167, 170, 717
HpyAV CCTTC 6 cut(s) 211, 951, 1491, 1531, 1617, 1687
HpyCH4III ACNGT 6 cut(s) 229, 356, 713, 910, 1019, 1277
HpyCH4IV ACGT 2 cut(s) 26, 479
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 146, 275, 496, 1625
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 26, 479
Hsp92I GRCGYC 2 cut(s) 26, 41
Hsp92II CATG 9 cut(s) 328, 440, 466, 611, 724, 790, 1162, 1240, 1495
HspAI GCGC 3 cut(s) 761, 902, 1628
KflI GGGWCCC 2 cut(s) 197, 305
KpnI GGTACC 1 cut(s) 595
Kzo9I GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
LmnI GCTCC 4 cut(s) 394, 673, 1191, 1676
Lsp1109I GCAGC 5 cut(s) 478, 691, 1112, 1372, 1487
LweI GCATC 2 cut(s) 959, 1477
MabI ACCWGGT 1 cut(s) 336
MaeI CTAG 3 cut(s) 596, 783, 1722
MaeII ACGT 2 cut(s) 26, 479
MaeIII GTNAC 4 cut(s) 473, 845, 1164, 1439
MalI GATC 7 cut(s) 59, 192, 350, 417, 539, 975, 1605
MbiI CCGCTC 1 cut(s) 397
MboI GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
MfeI CAATTG 2 cut(s) 1343, 1512
MflI RGATCY 3 cut(s) 190, 415, 537
MhlI GDGCHC 3 cut(s) 133, 771, 1196
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 8 cut(s) 623, 663, 1059, 1074, 1095, 1343, 1373, 1512
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 5 cut(s) 376, 569, 649, 1013, 1386
MmeI TCCRAC 3 cut(s) 411, 588, 1698
Mox20I TGGCCA 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 95
MscI TGGCCA 1 cut(s) 323
MseI TTAA 1 cut(s) 998
MslI CAYNNNNRTG 1 cut(s) 791
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 2 cut(s) 469, 1302
MspR9I CCNGG 8 cut(s) 45, 71, 188, 309, 320, 338, 1056, 1084
MunI CAATTG 2 cut(s) 1343, 1512
Mva1269I GAATGC 1 cut(s) 1030
MvaI CCWGG 2 cut(s) 320, 338
MvnI CGCG 1 cut(s) 1630
MwoI GCNNNNNNNGC 5 cut(s) 137, 146, 275, 496, 1625
NciI CCSGG 6 cut(s) 45, 71, 188, 309, 1056, 1084
NcoI CCATGG 1 cut(s) 1491
NdeII GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
NheI GCTAGC 1 cut(s) 782
NlaIII CATG 9 cut(s) 328, 440, 466, 611, 724, 790, 1162, 1240, 1495
NlaIV GGNNCC 9 cut(s) 64, 198, 199, 306, 307, 417, 593, 684, 1672
NmeAIII GCCGAG 1 cut(s) 604
NmuCI GTSAC 3 cut(s) 473, 845, 1439
NspI RCATGY 4 cut(s) 466, 611, 790, 1240
PaeI GCATGC 1 cut(s) 790
PceI AGGCCT 2 cut(s) 173, 257
PciI ACATGT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 3 cut(s) 23, 237, 561
PctI GAATGC 1 cut(s) 1030
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 755, 1505
PflMI CCANNNNNTGG 1 cut(s) 442
PleI GAGTC 5 cut(s) 376, 568, 649, 1012, 1386
PpsI GAGTC 5 cut(s) 376, 568, 649, 1012, 1386
Ppu21I YACGTR 1 cut(s) 480
PpuMI RGGWCCY 3 cut(s) 197, 305, 683
PscI ACATGT 1 cut(s) 607
PshAI GACNNNNGTC 2 cut(s) 688, 714
Psp5II RGGWCCY 3 cut(s) 197, 305, 683
Psp6I CCWGG 2 cut(s) 318, 336
PspFI CCCAGC 3 cut(s) 156, 469, 490
PspGI CCWGG 2 cut(s) 318, 336
PspN4I GGNNCC 9 cut(s) 64, 198, 199, 306, 307, 417, 593, 684, 1672
PspPI GGNCC 9 cut(s) 62, 197, 276, 305, 364, 399, 433, 683, 1296
PspPPI RGGWCCY 3 cut(s) 197, 305, 683
PsuI RGATCY 3 cut(s) 190, 415, 537
PvuII CAGCTG 1 cut(s) 469
RsaI GTAC 3 cut(s) 482, 593, 1529
RsaNI GTAC 3 cut(s) 481, 592, 1528
RseI CAYNNNNRTG 1 cut(s) 791
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 998
Sau3AI GATC 7 cut(s) 57, 190, 348, 415, 537, 973, 1603
Sau96I GGNCC 9 cut(s) 62, 197, 276, 305, 364, 399, 433, 683, 1296
SchI GAGTC 5 cut(s) 376, 569, 649, 1013, 1386
ScrFI CCNGG 8 cut(s) 45, 71, 188, 309, 320, 338, 1056, 1084
SduI GDGCHC 3 cut(s) 133, 771, 1196
SexAI ACCWGGT 1 cut(s) 336
SfaNI GCATC 2 cut(s) 959, 1477
SfcI CTRYAG 3 cut(s) 355, 643, 1281
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 6 cut(s) 62, 197, 305, 399, 433, 683
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 5 cut(s) 124, 500, 764, 1030, 1418
SmoI CTYRAG 5 cut(s) 124, 500, 764, 1030, 1418
SpeI ACTAGT 1 cut(s) 1721
SphI GCATGC 1 cut(s) 790
Sse9I AATT 8 cut(s) 623, 663, 1059, 1074, 1095, 1343, 1373, 1512
SseBI AGGCCT 2 cut(s) 173, 257
SspMI CTAG 3 cut(s) 596, 783, 1722
StuI AGGCCT 2 cut(s) 173, 257
StyD4I CCNGG 8 cut(s) 43, 69, 186, 307, 318, 336, 1054, 1082
StyI CCWWGG 2 cut(s) 258, 1491
TaaI ACNGT 6 cut(s) 229, 356, 713, 910, 1019, 1277
TaiI ACGT 2 cut(s) 29, 482
TaqI TCGA 4 cut(s) 89, 165, 291, 1390
TasI AATT 8 cut(s) 623, 663, 1059, 1074, 1095, 1343, 1373, 1512
TatI WGTACW 1 cut(s) 1527
TauI GCSGC 5 cut(s) 152, 155, 347, 827, 1434
TfiI GAWTC 2 cut(s) 755, 1505
Tru1I TTAA 1 cut(s) 998
Tru9I TTAA 1 cut(s) 998
TscAI CASTG 1 cut(s) 1282
TseFI GTSAC 3 cut(s) 473, 845, 1439
TseI GCWGC 5 cut(s) 466, 704, 1100, 1385, 1475
Tsp45I GTSAC 3 cut(s) 473, 845, 1439
TspDTI ATGAA 8 cut(s) 645, 665, 768, 1125, 1175, 1257, 1703, 1718
TspRI CASTG 1 cut(s) 1282
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 6 cut(s) 62, 197, 305, 399, 433, 683
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 1 cut(s) 663
XceI RCATGY 4 cut(s) 466, 611, 790, 1240
XcmI CCANNNNNNNNNTGG 1 cut(s) 1165
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 3 cut(s) 596, 783, 1722
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.