MD07G1152700.v1.1

nephrocystin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016392
Physical Location & Seq
Reverse (-)
22233012 .. 22237000
3989 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1152700.v1.1.491

Sequence Viewer

Length: 1740 bp
ATGCCAGGCTTAGTCTCACCCAAAAACTCGCCTCTTGGAGCACCATCGCCTCCTATTTTTGTACCCGACCCGACCCACAGAACAGAGCACTCCAATGGCACCAAAACCCCATCACTTACGACCACACGGACCAGAGCCGCCATAAAAGGGGCCCTAGAGAAGCTACTCATCGACGAGACCTCGCTCGACAACCCGGATCTGGGTCCCTTTTTGCTGAAACTCGCCCGGGACACTATCGGTTCGGGTGAGAACCCGAACAAGGCCTTGAACTACGCCATTCGAGCGTCCAAGTCATTTGAGCGGTGTTCGGGTCCTGGTCTTGACCTGGCTATGAGCATGCACGTAGTGGCGGCAATATATTGTAATTTGGGCCGGTTTGAGGAGGCGGTTCGGGTCTTGGAACAGTCCATTGAGGTGTCGGACCCGGAAAATGGAGCGGATCATGCTCTGGCAAAGTTCTCGGGGTACATGCAGCTGGGTGACACGTATTCGATGATGGGACAGCTTGAGCAGTCTATTTTATGTTACGGGTCGGGTTTGAAGATCCAAAAGGAGACTCTTGGTGAGTCGGATCCGAGAGTTGCAGAAACGTGCAGGTACCTAGCAGAAGCCCACGTCCAAGTAATGCAATTTGATGAGGCAGAGCACTACTGTAAGAAGATGCTTGAAATTCGCAGGGAGCATAACCCGCCTGCGTCTGTTGAAGAGGCTGCTGACCGGCGCCTCATGGCTCTCATTTACGAGGCAAAAGGAGATTCCGAATCTGCACTCGAGCACCTTGTCCTTGCAAGCATGATAATGATTGCCAAGGGACAGGACAATGAGGTTGCCACTATTGACATGGGCATTGGCAATATTTACTTGTCTCTTTGCCGCTTTGATGACGCTGTTTTCTCCTACCAGAAGGCACTTACTGTCTTGAAATCCATGGGGGGCGAAAATCACCCTTCAGTAGCATCAGTCTTTATTCGCCTTGCTGACCTGTATTACAAGACAGGGAAGTTAAGAGAGTCTAAATCCTACTGTGAGAATGCTTTGAGGATATATGCGAAACCTTCGCCTGGAATCACATCTGAGGAACTGGCTAGCGGTTTGACTGAAATCGCAGCCATCTATGAAGCTGTCAATGAGCCTGAGGAGGCACTGACTCTCTTGCAGAAGGCAATGAAGTCATTAGATGATACACCTGCACAGAGGAGCACTATCGCAGGAATAGAAGCACAGATGGGTGTTATGTTCTACATGGTCGGGAGGTATGTGGAGGCTTGGAGGTCTTTTGAGAGTGCTCTATCAAAGCTTCGGGCTAGCGGGGAGAGGAAATCCGCCTATTTTGGTGTTGTGTTGAACCAGATGGGGTTGGCTAGTGTGCAGTTGTACAAGTTAGATGAGGCCGCTCAACTTTTTGAAGAAGCAAAGGAGATACTGGAGCAGGAGAGTGGCCTTTGTCATCCCGATACGCTTGGAGTATACAGCAACCTTGCAGCAACTTATGATGCCATGGGAAGAGTAGAAGCTGCAATTGAGATATTAGAGCATGTCTTAAGGGTGAAGGAAGAGAAGCTTGGTACGGCAAATCCAGATTTTGACGACGAGAAGAAAAGGCTAGCTCATCTTTTGAAAGAAGCAGGAAGGGCTAGGAACAGAAAAGGAAAATCACTTGAAAATCTCCTCCATTCCAACTCCCAAAGGACGAAGGACGAAGGATCGAAGAGGCAGTCTGGATTTGGATACGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009855 GO:0009887 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0032501 GO:0032502 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0072001 GO:0072189 GO:0072359 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

580

Amino Acids

63.73

Weight (kDa)

5.45

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 109 - 185 6.7e-09 Tetratricopeptide repeat
TPR_MalT PF17874 115 - 261 5e-11 MalT-like TPR region
TPR_12 PF13424 156 - 227 7e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 156 - 251 3.6e-06 Nephrocystin-3 TPR domain
TPR_MalT PF17874 243 - 409 9.1e-10 MalT-like TPR region
TPR_NPHP3 PF24885 274 - 401 1e-07 Nephrocystin-3 TPR domain
TPR_12 PF13424 276 - 350 9.3e-10 Tetratricopeptide repeat
TPR_12 PF13424 318 - 390 9.4e-10 Tetratricopeptide repeat
TPR_12 PF13424 447 - 519 6.2e-10 Tetratricopeptide repeat
TPR_10 PF13374 486 - 527 1.7e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016392)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g16910
malus_domestica MD01G1083900.v1.1 MD07G1152700.v1.1
prunus_persica Prupe.2G191200_v2.0.a1
pyrus_communis pycom07g15090
rosa_chinensis RchiOBHm_Chr1g0360141
rosa_laevigata RLG00000027827
rosa_multiflora Rmu_sc0007813.1_g000005 Rmu_ssc0000368.1_g000043
rosa_roxburghii Rroxscaffold_4G00296350
rosa_rugosa Rorug01G0275300
rosa_samantha Rh1AG289100 Rh1BG254800 Rh1DG284200
rosa_wichuraiana Rw1G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1195
Acc36I ACCTGC 2 cut(s) 585, 1195
Acc65I GGTACC 1 cut(s) 597
AccB1I GGYRCC 3 cut(s) 98, 597, 720
AccBSI CCGCTC 3 cut(s) 301, 437, 1394
AccI GTMKAC 1 cut(s) 1467
AclWI GGATC 6 cut(s) 204, 447, 538, 566, 579, 1711
AcsI RAATTY 1 cut(s) 669
AcuI CTGAAG 1 cut(s) 933
AcyI GRCGYC 1 cut(s) 721
AdeI CACNNNGTG 1 cut(s) 346
AfaI GTAC 5 cut(s) 63, 467, 599, 1376, 1567
AfiI CCNNNNNNNGG 7 cut(s) 147, 199, 200, 259, 379, 431, 1061
AflII CTTAAG 1 cut(s) 1540
AflIII ACRYGT 1 cut(s) 483
AgsI TTSAA 9 cut(s) 268, 541, 668, 704, 922, 1345, 1406, 1618, 1661
AjiI CACGTC 1 cut(s) 616
AjnI CCWGG 4 cut(s) 4, 313, 324, 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 1545, 1577
AluBI AGCT 8 cut(s) 163, 475, 505, 1121, 1297, 1514, 1561, 1607
AluI AGCT 8 cut(s) 163, 475, 505, 1121, 1297, 1514, 1561, 1607
Alw21I GWGCWC 6 cut(s) 43, 90, 648, 777, 1202, 1288
Alw26I GTCTC 4 cut(s) 19, 170, 548, 870
AlwI GGATC 6 cut(s) 204, 447, 538, 566, 579, 1711
Ama87I CYCGRG 3 cut(s) 225, 460, 770
AoxI GGCC 5 cut(s) 150, 261, 370, 1389, 1438
ApaI GGGCCC 1 cut(s) 154
ApeKI GCWGC 5 cut(s) 472, 710, 1106, 1481, 1514
ApoI RAATTY 1 cut(s) 669
ArsI GACNNNNNNTTYG 2 cut(s) 1700, 1732
Asp718I GGTACC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 723
AspS9I GGNCC 7 cut(s) 129, 150, 151, 203, 311, 370, 421
AsuC2I CCSGG 4 cut(s) 194, 226, 227, 425
AsuHPI GGTGA 6 cut(s) 9, 257, 491, 575, 935, 1558
AsuNHI GCTAGC 3 cut(s) 1085, 1304, 1603
AvaI CYCGRG 3 cut(s) 225, 460, 770
AvaII GGWCC 4 cut(s) 129, 203, 311, 421
AxyI CCTNAGG 1 cut(s) 1134
BaeGI GKGCMC 1 cut(s) 154
BamHI GGATCC 1 cut(s) 571
BanI GGYRCC 3 cut(s) 98, 597, 720
BanII GRGCYC 1 cut(s) 154
Bbv12I GWGCWC 6 cut(s) 43, 90, 648, 777, 1202, 1288
BbvI GCAGC 5 cut(s) 484, 697, 1118, 1493, 1501
BccI CCATC 6 cut(s) 52, 118, 490, 1118, 1219, 1345
BceAI ACGGC 1 cut(s) 1584
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 4 cut(s) 6, 315, 326, 1062
BciVI GTATCC 1 cut(s) 1721
BcnI CCSGG 4 cut(s) 194, 226, 227, 425
BcoDI GTCTC 4 cut(s) 19, 170, 548, 870
BfaI CTAG 7 cut(s) 155, 602, 1086, 1305, 1362, 1604, 1635
BfoI RGCGCY 1 cut(s) 724
BfrI CTTAAG 1 cut(s) 1540
BfuAI ACCTGC 2 cut(s) 585, 1195
BfuI GTATCC 1 cut(s) 1721
BisI GCNGC 9 cut(s) 138, 351, 473, 711, 874, 1107, 1392, 1482, 1515
BlsI GCNGC 9 cut(s) 139, 352, 474, 712, 875, 1108, 1393, 1483, 1516
Bme1390I CCNGG 8 cut(s) 6, 194, 226, 227, 315, 326, 425, 1062
Bme18I GGWCC 4 cut(s) 129, 203, 311, 421
BmeT110I CYCGRG 3 cut(s) 225, 460, 770
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 7 cut(s) 129, 150, 151, 203, 311, 370, 421
BmrFI CCNGG 8 cut(s) 6, 194, 226, 227, 315, 326, 425, 1062
BmsI GCATC 3 cut(s) 651, 965, 1483
BmtI GCTAGC 3 cut(s) 1089, 1308, 1607
BpmI CTGGAG 1 cut(s) 1445
BpuEI CTTGAG 1 cut(s) 527
BpuMI CCSGG 4 cut(s) 194, 226, 227, 425
BsaAI YACGTR 2 cut(s) 343, 486
BsaHI GRCGYC 1 cut(s) 721
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 225, 807, 927, 1497
Bsc4I CCNNNNNNNGG 7 cut(s) 147, 199, 200, 259, 379, 431, 1061
Bse118I RCCGGY 2 cut(s) 372, 717
Bse1I ACTGG 2 cut(s) 1086, 1428
Bse21I CCTNAGG 1 cut(s) 1134
Bse3DI GCAATG 1 cut(s) 1170
BseBI CCWGG 4 cut(s) 6, 315, 326, 1062
BseDI CCNNGG 4 cut(s) 225, 807, 927, 1497
BseGI GGATG 1 cut(s) 1447
BseLI CCNNNNNNNGG 7 cut(s) 147, 199, 200, 259, 379, 431, 1061
BseMI GCAATG 1 cut(s) 1170
BseMII CTCAG 2 cut(s) 1065, 1125
BseNI ACTGG 2 cut(s) 1086, 1428
BseRI GAGGAG 4 cut(s) 395, 1151, 1210, 1658
BseSI GKGCMC 1 cut(s) 154
BseXI GCAGC 5 cut(s) 484, 697, 1118, 1493, 1501
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 4 cut(s) 613, 750, 1173, 1388
BshFI GGCC 5 cut(s) 152, 263, 372, 1391, 1440
BshNI GGYRCC 3 cut(s) 98, 597, 720
BsiHKAI GWGCWC 6 cut(s) 43, 90, 648, 777, 1202, 1288
BsiHKCI CYCGRG 3 cut(s) 225, 460, 770
BsiSI CCGG 5 cut(s) 194, 226, 373, 425, 718
BslFI GGGAC 4 cut(s) 189, 242, 513, 825
BslI CCNNNNNNNGG 7 cut(s) 147, 199, 200, 259, 379, 431, 1061
BsmAI GTCTC 4 cut(s) 19, 170, 548, 870
BsmFI GGGAC 4 cut(s) 189, 242, 513, 825
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 5 cut(s) 152, 263, 372, 1391, 1440
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 3 cut(s) 225, 460, 770
Bsp120I GGGCCC 1 cut(s) 150
Bsp1286I GDGCHC 7 cut(s) 43, 90, 154, 648, 777, 1202, 1288
Bsp1407I TGTACA 1 cut(s) 1374
Bsp143I GATC 5 cut(s) 196, 439, 543, 571, 1703
Bsp19I CCATGG 2 cut(s) 927, 1497
BspANI GGCC 5 cut(s) 152, 263, 372, 1391, 1440
BspCNI CTCAG 2 cut(s) 1066, 1126
BspMI ACCTGC 2 cut(s) 585, 1195
BspOI GCTAGC 3 cut(s) 1089, 1308, 1607
BspPI GGATC 6 cut(s) 204, 447, 538, 566, 579, 1711
BspT107I GGYRCC 3 cut(s) 98, 597, 720
BspTI CTTAAG 1 cut(s) 1540
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 3 cut(s) 301, 437, 1394
BsrDI GCAATG 1 cut(s) 1170
BsrFI RCCGGY 2 cut(s) 372, 717
BsrGI TGTACA 1 cut(s) 1374
BsrI ACTGG 2 cut(s) 1086, 1428
BssAI RCCGGY 2 cut(s) 372, 717
BssECI CCNNGG 4 cut(s) 225, 807, 927, 1497
BssMI GATC 5 cut(s) 196, 439, 543, 571, 1703
BssNAI GTATAC 1 cut(s) 1468
BssNI GRCGYC 1 cut(s) 721
BssT1I CCWWGG 3 cut(s) 807, 927, 1497
Bst1107I GTATAC 1 cut(s) 1468
Bst2UI CCWGG 4 cut(s) 6, 315, 326, 1062
Bst4CI ACNGT 4 cut(s) 405, 653, 916, 1025
Bst6I CTCTTC 4 cut(s) 699, 1498, 1548, 1703
BstACI GRCGYC 1 cut(s) 721
BstAFI CTTAAG 1 cut(s) 1540
BstAUI TGTACA 1 cut(s) 1374
BstBAI YACGTR 2 cut(s) 343, 486
BstC8I GCNNGC 6 cut(s) 338, 693, 790, 1087, 1306, 1605
BstDEI CTNAG 3 cut(s) 10, 1074, 1134
BstDSI CCRYGG 2 cut(s) 927, 1497
BstF5I GGATG 1 cut(s) 1447
BstH2I RGCGCY 1 cut(s) 724
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 5 cut(s) 199, 442, 546, 574, 1706
BstMAI GTCTC 4 cut(s) 19, 170, 548, 870
BstMBI GATC 5 cut(s) 196, 439, 543, 571, 1703
BstMWI GCNNNNNNNGC 4 cut(s) 281, 443, 688, 1631
BstNI CCWGG 4 cut(s) 6, 315, 326, 1062
BstNSI RCATGY 3 cut(s) 340, 472, 1538
BstSCI CCNGG 8 cut(s) 4, 192, 224, 225, 313, 324, 423, 1060
BstSLI GKGCMC 1 cut(s) 154
BstV1I GCAGC 5 cut(s) 484, 697, 1118, 1493, 1501
BstX2I RGATCY 3 cut(s) 196, 543, 571
BstYI RGATCY 3 cut(s) 196, 543, 571
BstZ17I GTATAC 1 cut(s) 1468
Bsu36I CCTNAGG 1 cut(s) 1134
BsuI GTATCC 1 cut(s) 1721
BsuRI GGCC 5 cut(s) 152, 263, 372, 1391, 1440
BtgI CCRYGG 2 cut(s) 927, 1497
BtgZI GCGATG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 1 cut(s) 1447
BtsIMutI CAGTG 1 cut(s) 1142
BveI ACCTGC 2 cut(s) 585, 1195
Cac8I GCNNGC 6 cut(s) 338, 693, 790, 1087, 1306, 1605
CfoI GCGC 1 cut(s) 723
Cfr10I RCCGGY 2 cut(s) 372, 717
Cfr13I GGNCC 7 cut(s) 129, 150, 151, 203, 311, 370, 421
Cfr9I CCCGGG 1 cut(s) 225
CseI GACGC 3 cut(s) 273, 684, 893
Csp6I GTAC 5 cut(s) 62, 466, 598, 1375, 1566
CviQI GTAC 5 cut(s) 62, 466, 598, 1375, 1566
DdeI CTNAG 3 cut(s) 10, 1074, 1134
DinI GGCGCC 1 cut(s) 722
DpnI GATC 5 cut(s) 198, 441, 545, 573, 1705
DpnII GATC 5 cut(s) 196, 439, 543, 571, 1703
DraIII CACNNNGTG 1 cut(s) 346
Eam1104I CTCTTC 4 cut(s) 699, 1498, 1548, 1703
EarI CTCTTC 4 cut(s) 699, 1498, 1548, 1703
EciI GGCGGA 1 cut(s) 1312
Eco130I CCWWGG 3 cut(s) 807, 927, 1497
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 4 cut(s) 129, 203, 311, 421
Eco57I CTGAAG 1 cut(s) 933
Eco81I CCTNAGG 1 cut(s) 1134
Eco88I CYCGRG 3 cut(s) 225, 460, 770
EcoO109I RGGNCCY 4 cut(s) 150, 151, 203, 311
EcoRII CCWGG 4 cut(s) 4, 313, 324, 1060
EcoT14I CCWWGG 3 cut(s) 807, 927, 1497
EcoT38I GRGCYC 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 722
EheI GGCGCC 1 cut(s) 722
ErhI CCWWGG 3 cut(s) 807, 927, 1497
FalI AAGNNNNNCTT 2 cut(s) 1545, 1577
FaqI GGGAC 4 cut(s) 189, 242, 513, 825
FauI CCCGC 2 cut(s) 696, 1301
FblI GTMKAC 1 cut(s) 1467
Fnu4HI GCNGC 9 cut(s) 138, 351, 473, 711, 874, 1107, 1392, 1482, 1515
FokI GGATG 1 cut(s) 1434
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 9 cut(s) 138, 351, 473, 711, 874, 1107, 1392, 1482, 1515
FspBI CTAG 7 cut(s) 155, 602, 1086, 1305, 1362, 1604, 1635
GlaI GCGC 1 cut(s) 722
GluI GCNGC 9 cut(s) 138, 351, 473, 711, 874, 1107, 1392, 1482, 1515
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 1 cut(s) 1445
HaeII RGCGCY 1 cut(s) 724
HaeIII GGCC 5 cut(s) 152, 263, 372, 1391, 1440
HapII CCGG 5 cut(s) 194, 226, 373, 425, 718
HgaI GACGC 3 cut(s) 273, 684, 893
HhaI GCGC 1 cut(s) 723
Hin1I GRCGYC 1 cut(s) 721
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HindIII AAGCTT 2 cut(s) 1295, 1559
HinfI GANTC 7 cut(s) 556, 566, 755, 761, 1010, 1065, 1147
HpaII CCGG 5 cut(s) 194, 226, 373, 425, 718
HphI GGTGA 6 cut(s) 9, 257, 491, 575, 935, 1558
Hpy166II GTNNAC 1 cut(s) 1468
Hpy188I TCNGA 5 cut(s) 421, 571, 576, 760, 1075
Hpy188III TCNNGA 6 cut(s) 320, 919, 1249, 1451, 1577, 1719
Hpy8I GTNNAC 1 cut(s) 1468
Hpy99I CGWCG 2 cut(s) 176, 1592
HpyAV CCTTC 8 cut(s) 898, 957, 1065, 1153, 1543, 1623, 1687, 1694
HpyCH4III ACNGT 4 cut(s) 405, 653, 916, 1025
HpyCH4IV ACGT 4 cut(s) 342, 485, 590, 615
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 443, 688, 1631
HpyF3I CTNAG 3 cut(s) 10, 1074, 1134
HpySE526I ACGT 4 cut(s) 342, 485, 590, 615
Hsp92I GRCGYC 1 cut(s) 721
HspAI GCGC 1 cut(s) 721
KasI GGCGCC 1 cut(s) 720
KflI GGGWCCC 1 cut(s) 203
KpnI GGTACC 1 cut(s) 601
Kzo9I GATC 5 cut(s) 196, 439, 543, 571, 1703
LmnI GCTCC 5 cut(s) 38, 434, 679, 1197, 1426
Lsp1109I GCAGC 5 cut(s) 484, 697, 1118, 1493, 1501
LweI GCATC 3 cut(s) 651, 965, 1483
MaeI CTAG 7 cut(s) 155, 602, 1086, 1305, 1362, 1604, 1635
MaeII ACGT 4 cut(s) 342, 485, 590, 615
MaeIII GTNAC 2 cut(s) 479, 524
MalI GATC 5 cut(s) 198, 441, 545, 573, 1705
MbiI CCGCTC 3 cut(s) 301, 437, 1394
MboI GATC 5 cut(s) 196, 439, 543, 571, 1703
MboII GAAGA 8 cut(s) 553, 670, 716, 1418, 1515, 1565, 1606, 1720
MfeI CAATTG 1 cut(s) 1518
MflI RGATCY 3 cut(s) 196, 543, 571
MhlI GDGCHC 7 cut(s) 43, 90, 154, 648, 777, 1202, 1288
MluCI AATT 4 cut(s) 364, 629, 669, 1518
Mly113I GGCGCC 1 cut(s) 721
MlyI GAGTC 4 cut(s) 550, 575, 1019, 1141
MmeI TCCRAC 3 cut(s) 399, 549, 1701
MseI TTAA 2 cut(s) 1004, 1541
MslI CAYNNNNRTG 3 cut(s) 93, 413, 797
MspA1I CMGCKG 1 cut(s) 475
MspCI CTTAAG 1 cut(s) 1540
MspI CCGG 5 cut(s) 194, 226, 373, 425, 718
MspR9I CCNGG 8 cut(s) 6, 194, 226, 227, 315, 326, 425, 1062
MunI CAATTG 1 cut(s) 1518
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 4 cut(s) 6, 315, 326, 1062
MwoI GCNNNNNNNGC 4 cut(s) 281, 443, 688, 1631
NarI GGCGCC 1 cut(s) 721
NciI CCSGG 4 cut(s) 194, 226, 227, 425
NcoI CCATGG 2 cut(s) 927, 1497
NdeII GATC 5 cut(s) 196, 439, 543, 571, 1703
NheI GCTAGC 3 cut(s) 1085, 1304, 1603
NmuCI GTSAC 1 cut(s) 479
NspI RCATGY 3 cut(s) 340, 472, 1538
PaeI GCATGC 1 cut(s) 340
PaeR7I CTCGAG 1 cut(s) 770
PaqCI CACCTGC 1 cut(s) 1195
PceI AGGCCT 1 cut(s) 263
PctI GAATGC 1 cut(s) 1036
PfeI GAWTC 3 cut(s) 755, 761, 1065
PkrI GCNGC 9 cut(s) 139, 352, 474, 712, 875, 1108, 1393, 1483, 1516
PleI GAGTC 4 cut(s) 550, 574, 1018, 1141
PluTI GGCGCC 1 cut(s) 724
PpsI GAGTC 4 cut(s) 550, 574, 1018, 1141
Ppu21I YACGTR 2 cut(s) 343, 486
PpuMI RGGWCCY 2 cut(s) 203, 311
Psp5II RGGWCCY 2 cut(s) 203, 311
Psp6I CCWGG 4 cut(s) 4, 313, 324, 1060
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 4 cut(s) 4, 313, 324, 1060
PspOMI GGGCCC 1 cut(s) 150
PspPI GGNCC 7 cut(s) 129, 150, 151, 203, 311, 370, 421
PspPPI RGGWCCY 2 cut(s) 203, 311
PspXI VCTCGAGB 1 cut(s) 770
PsuI RGATCY 3 cut(s) 196, 543, 571
PvuII CAGCTG 1 cut(s) 475
RsaI GTAC 5 cut(s) 63, 467, 599, 1376, 1567
RsaNI GTAC 5 cut(s) 62, 466, 598, 1375, 1566
RseI CAYNNNNRTG 3 cut(s) 93, 413, 797
SaqAI TTAA 2 cut(s) 1004, 1541
SatI GCNGC 9 cut(s) 138, 351, 473, 711, 874, 1107, 1392, 1482, 1515
Sau3AI GATC 5 cut(s) 196, 439, 543, 571, 1703
Sau96I GGNCC 7 cut(s) 129, 150, 151, 203, 311, 370, 421
SchI GAGTC 4 cut(s) 550, 575, 1019, 1141
ScrFI CCNGG 8 cut(s) 6, 194, 226, 227, 315, 326, 425, 1062
SduI GDGCHC 7 cut(s) 43, 90, 154, 648, 777, 1202, 1288
SfaNI GCATC 3 cut(s) 651, 965, 1483
SfoI GGCGCC 1 cut(s) 722
Sfr274I CTCGAG 1 cut(s) 770
SinI GGWCC 4 cut(s) 129, 203, 311, 421
SlaI CTCGAG 1 cut(s) 770
SmaI CCCGGG 1 cut(s) 227
SmiMI CAYNNNNRTG 3 cut(s) 93, 413, 797
SmlI CTYRAG 3 cut(s) 506, 770, 1540
SmoI CTYRAG 3 cut(s) 506, 770, 1540
SphI GCATGC 1 cut(s) 340
Sse9I AATT 4 cut(s) 364, 629, 669, 1518
SseBI AGGCCT 1 cut(s) 263
SspDI GGCGCC 1 cut(s) 720
SspI AATATT 1 cut(s) 856
SspMI CTAG 7 cut(s) 155, 602, 1086, 1305, 1362, 1604, 1635
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 8 cut(s) 4, 192, 224, 225, 313, 324, 423, 1060
StyI CCWWGG 3 cut(s) 807, 927, 1497
TaaI ACNGT 4 cut(s) 405, 653, 916, 1025
TaiI ACGT 4 cut(s) 345, 488, 593, 618
TaqI TCGA 6 cut(s) 171, 186, 280, 491, 771, 1706
TasI AATT 4 cut(s) 364, 629, 669, 1518
TatI WGTACW 1 cut(s) 1374
TauI GCSGC 4 cut(s) 140, 353, 876, 1394
TfiI GAWTC 3 cut(s) 755, 761, 1065
Tru1I TTAA 2 cut(s) 1004, 1541
Tru9I TTAA 2 cut(s) 1004, 1541
TscAI CASTG 1 cut(s) 1149
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 5 cut(s) 472, 710, 1106, 1481, 1514
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 1131, 1181
TspGWI ACGGA 1 cut(s) 142
TspMI CCCGGG 1 cut(s) 225
TspRI CASTG 1 cut(s) 1149
Vha464I CTTAAG 1 cut(s) 1540
VpaK11BI GGWCC 4 cut(s) 129, 203, 311, 421
XapI RAATTY 1 cut(s) 669
XceI RCATGY 3 cut(s) 340, 472, 1538
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XhoI CTCGAG 1 cut(s) 770
XmaI CCCGGG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 1467
XspI CTAG 7 cut(s) 155, 602, 1086, 1305, 1362, 1604, 1635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.