Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016575

Physical Location & Seq

Genomic Coordinates Forward (+)

14605596 .. 14606034

Gene Structure 439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g17080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGGAGCAATGGAACAACAACTGAATACCAGGACTTGTTACCAGTGATGGCAGAGAAGCTGGATGTGGAGGCCTTTGTGTCCGAGTTATGTGGAGGTTTTCGGCTCCTGGCAGACCAGGAAAGGGGGCTGATCACCTCTGAAAGCCTGAAGAAGAATTCTGCGCTTCTCGGAATGGAGGGGATGAGCAAAGAGGATGCTGAGGGCATGGTTAGGGAAGGTGATCTTGATGGAGACGGGGCACTGAGTGAGACCGAGTTCTGTATCCTCATGGTGAGGCTGAGTCCAGGGATGATGGAAGATGCAGAGACTTGGCTTGAAAAGGCTCTTGATCAAGAGCTCAAGAAGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043167 GO:0043169 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko03420 ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map03420 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

118

Amino Acids

12.78

Weight (kDa)

4.21

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	42 - 93	2e-16	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46600
fragaria_vesca	FvH4_7g17080
malus_domestica	MD01G1085500.v1.1 MD07G1154400.v1.1
prunus_persica	Prupe.2G193100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360491
rosa_laevigata	RLG00000027803
rosa_multiflora	Rmu_ssc0000337.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296050
rosa_rugosa	Rorug01G0278700
rosa_samantha	Rh1AG291400 Rh1BG256400 Rh1DG286200
rosa_wichuraiana	Rw1G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	170
AdeI	CACNNNGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	4 cut(s)	30, 108, 117, 286
AluBI	AGCT	2 cut(s)	61, 340
AluI	AGCT	2 cut(s)	61, 340
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	3 cut(s)	228, 245, 302
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	3 cut(s)	127, 233, 286
BaeGI	GKGCMC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	201
BccI	CCATC	3 cut(s)	43, 224, 289
BciT130I	CCWGG	4 cut(s)	32, 110, 119, 288
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	2 cut(s)	132, 331
BcoDI	GTCTC	3 cut(s)	228, 245, 302
BfuI	GTATCC	1 cut(s)	275
Bme1390I	CCNGG	4 cut(s)	32, 110, 119, 288
BmiI	GGNNCC	1 cut(s)	107
BmrFI	CCNGG	4 cut(s)	32, 110, 119, 288
BmsI	GCATC	2 cut(s)	187, 292
Bpu10I	CCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	4 cut(s)	32, 110, 119, 288
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	70, 189, 202, 297
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	192, 236, 272
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	3 cut(s)	228, 245, 302
BsmBI	CGTCTC	1 cut(s)	228
BsnI	GGCC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	244, 342
Bsp143I	GATC	3 cut(s)	132, 223, 331
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	3 cut(s)	193, 237, 273
BspLI	GGNNCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	132, 223, 331
Bst2UI	CCWGG	4 cut(s)	32, 110, 119, 288
BstDEI	CTNAG	3 cut(s)	201, 245, 281
BstF5I	GGATG	4 cut(s)	70, 189, 202, 297
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	3 cut(s)	135, 226, 334
BstMAI	GTCTC	3 cut(s)	228, 245, 302
BstMBI	GATC	3 cut(s)	132, 223, 331
BstNI	CCWGG	4 cut(s)	32, 110, 119, 288
BstSCI	CCNGG	4 cut(s)	30, 108, 117, 286
BstSLI	GKGCMC	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	70, 189, 202, 297
BtsIMutI	CAGTG	2 cut(s)	51, 242
CfoI	GCGC	1 cut(s)	166
CviAII	CATG	2 cut(s)	208, 271
CviJI	RGCY	9 cut(s)	61, 74, 106, 130, 147, 280, 316, 326, 340
CviKI_1	RGCY	9 cut(s)	61, 74, 106, 130, 147, 280, 316, 326, 340
DdeI	CTNAG	3 cut(s)	201, 245, 281
DpnI	GATC	3 cut(s)	134, 225, 333
DpnII	GATC	3 cut(s)	132, 223, 331
DraIII	CACNNNGTG	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	245
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	4 cut(s)	30, 108, 117, 286
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	2 cut(s)	211, 274
FaiI	YATR	3 cut(s)	91, 209, 272
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	2 cut(s)	207, 270
FbaI	TGATCA	2 cut(s)	132, 331
FokI	GGATG	4 cut(s)	77, 196, 209, 304
FriOI	GRGCYC	1 cut(s)	342
GlaI	GCGC	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	211, 274
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	3 cut(s)	127, 233, 286
Hpy188I	TCNGA	3 cut(s)	85, 142, 173
Hpy188III	TCNNGA	5 cut(s)	227, 329, 335, 343, 351
HpyAV	CCTTC	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	305
HpyF3I	CTNAG	3 cut(s)	201, 245, 281
Hsp92II	CATG	2 cut(s)	211, 274
HspAI	GCGC	1 cut(s)	164
Ksp22I	TGATCA	2 cut(s)	132, 331
Kzo9I	GATC	3 cut(s)	132, 223, 331
LmnI	GCTCC	2 cut(s)	6, 111
LweI	GCATC	2 cut(s)	187, 292
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	3 cut(s)	134, 225, 333
MboI	GATC	3 cut(s)	132, 223, 331
MboII	GAAGA	3 cut(s)	163, 166, 311
MhlI	GDGCHC	2 cut(s)	244, 342
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	64, 89, 148, 172, 187, 196, 270, 278
MspR9I	CCNGG	4 cut(s)	32, 110, 119, 288
MvaI	CCWGG	4 cut(s)	32, 110, 119, 288
NdeII	GATC	3 cut(s)	132, 223, 331
NlaIII	CATG	2 cut(s)	211, 274
NlaIV	GGNNCC	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	74
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	4 cut(s)	30, 108, 117, 286
PspGI	CCWGG	4 cut(s)	30, 108, 117, 286
PspN4I	GGNNCC	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	342
Sau3AI	GATC	3 cut(s)	132, 223, 331
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	4 cut(s)	32, 110, 119, 288
SduI	GDGCHC	2 cut(s)	244, 342
SetI	ASST	5 cut(s)	63, 100, 140, 223, 342
SfaNI	GCATC	2 cut(s)	187, 292
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	157
SseBI	AGGCCT	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	342
StuI	AGGCCT	1 cut(s)	74
StyD4I	CCNGG	4 cut(s)	30, 108, 117, 286
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	157
TscAI	CASTG	2 cut(s)	51, 249
TspRI	CASTG	2 cut(s)	51, 249
XapI	RAATTY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.