Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0016575

Physical Location & Seq

Genomic Coordinates Forward (+)

50842653 .. 50844664

Gene Structure 2012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG286200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGCAGCAATGGAACAACTGAATACCAGGACTTGTTACCAGTGATGGCAGAGAAGCTGGATGTGGAGACCTTTGTGTCCGAGCTATGTGGAGGTTTTCGACTTCTGGCAGACCCCGAAAGCGGGCTGATCACCTCGGAGAGCCTGAAGAAGAATTCTGCGCTTCTCGGAATGGAGGGGATGAGCAAGGAGGATGCTGAGGGCATGGTTAGGGAAGGTGATCTTGATGGAGACGGCGTGCTGAATGAGACGGAGTTCTGTATTCTCATGGTGAGGCTGAGTCCAGGGATGATGGAAGATGCAGAGACTTGGCTTGAGAAAGCTCTTGAACAAGAGCTAAAGAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043167 GO:0043169 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko03420 ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map03420 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

116

Amino Acids

12.68

Weight (kDa)

4.15

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	40 - 92	2.2e-16	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46600
fragaria_vesca	FvH4_7g17080
malus_domestica	MD01G1085500.v1.1 MD07G1154400.v1.1
prunus_persica	Prupe.2G193100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360491
rosa_laevigata	RLG00000027803
rosa_multiflora	Rmu_ssc0000337.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296050
rosa_rugosa	Rorug01G0278700
rosa_samantha	Rh1AG291400 Rh1BG256400 Rh1DG286200
rosa_wichuraiana	Rw1G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AciI	CCGC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	122, 123
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	27, 283
AluBI	AGCT	4 cut(s)	58, 85, 323, 337
AluI	AGCT	4 cut(s)	58, 85, 323, 337
Alw26I	GTCTC	4 cut(s)	62, 225, 242, 299
ApeKI	GCWGC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	124, 230, 283
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	3 cut(s)	40, 221, 286
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	29, 285
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	4 cut(s)	62, 225, 242, 299
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	29, 285
BmrFI	CCNGG	2 cut(s)	29, 285
BmsI	GCATC	2 cut(s)	184, 289
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	135, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 123
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	29, 285
BseDI	CCNNGG	2 cut(s)	135, 284
BseGI	GGATG	4 cut(s)	67, 186, 199, 294
BseLI	CCNNNNNNNGG	2 cut(s)	122, 123
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	189, 269
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	122, 123
BsmAI	GTCTC	4 cut(s)	62, 225, 242, 299
BsmBI	CGTCTC	2 cut(s)	225, 242
Bso31I	GGTCTC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	129, 220
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	2 cut(s)	190, 270
BspTNI	GGTCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	135, 284
BssMI	GATC	2 cut(s)	129, 220
Bst2UI	CCWGG	2 cut(s)	29, 285
BstC8I	GCNNGC	2 cut(s)	125, 239
BstDEI	CTNAG	2 cut(s)	198, 278
BstF5I	GGATG	4 cut(s)	67, 186, 199, 294
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	132, 223
BstMAI	GTCTC	4 cut(s)	62, 225, 242, 299
BstMBI	GATC	2 cut(s)	129, 220
BstNI	CCWGG	2 cut(s)	29, 285
BstSCI	CCNGG	2 cut(s)	27, 283
BstV1I	GCAGC	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	67, 186, 199, 294
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	125, 239
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	2 cut(s)	205, 268
CviJI	RGCY	8 cut(s)	58, 85, 127, 144, 277, 313, 323, 337
CviKI_1	RGCY	8 cut(s)	58, 85, 127, 144, 277, 313, 323, 337
DdeI	CTNAG	2 cut(s)	198, 278
DpnI	GATC	2 cut(s)	131, 222
DpnII	GATC	2 cut(s)	129, 220
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	27, 283
Esp3I	CGTCTC	2 cut(s)	225, 242
FaeI	CATG	2 cut(s)	208, 271
FaiI	YATR	3 cut(s)	88, 206, 269
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	2 cut(s)	204, 267
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	4 cut(s)	74, 193, 206, 301
Fsp4HI	GCNGC	1 cut(s)	7
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	208, 271
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	3 cut(s)	124, 230, 283
Hpy188I	TCNGA	3 cut(s)	82, 139, 170
Hpy188III	TCNNGA	3 cut(s)	224, 326, 348
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	198, 278
Hsp92II	CATG	2 cut(s)	208, 271
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	129, 220
LpnPI	CCDG	8 cut(s)	14, 41, 44, 54, 92, 158, 270, 297
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	184, 289
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	131, 222
MboI	GATC	2 cut(s)	129, 220
MboII	GAAGA	3 cut(s)	160, 163, 308
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	6 cut(s)	86, 145, 169, 184, 193, 267
MspR9I	CCNGG	2 cut(s)	29, 285
MvaI	CCWGG	2 cut(s)	29, 285
NdeII	GATC	2 cut(s)	129, 220
NlaIII	CATG	2 cut(s)	208, 271
PkrI	GCNGC	1 cut(s)	8
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	27, 283
PspGI	CCWGG	2 cut(s)	27, 283
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	2 cut(s)	129, 220
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	29, 285
SetI	ASST	8 cut(s)	60, 74, 87, 97, 137, 220, 325, 339
SfaNI	GCATC	2 cut(s)	184, 289
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	27, 283
TaqI	TCGA	1 cut(s)	100
TasI	AATT	1 cut(s)	154
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.