Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0016575

Physical Location & Seq

Genomic Coordinates Reverse (-)

16167056 .. 16167937

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGGAGCAATGGAACAACTGAATACCAGGACCTGTTACCAGTGATGGCAGAGAAGCTGGATGTCGAGGCCTTTGTGTCCGAGCTATGTGGAGGTTTTCGACTTCTGGCAGACCCCGCAAGCGGGTTGATCACCTCGGAGAGCCTGAAGAAGAATTCTGCGCTTCTGGGAATGGAGGGGATGAGCAAAGAGGATGCTGAGGGCATGGTTAGGGAAGGTGATCTTGATGGAGACGGCGTGCTGAATGAGACGGAGTTCTGTATTCTCATGGTGAGGCTGAGTCCAGGAATGATGGAAGATGCAGAGACTTGGCTTGAGAAAGCTCTTGAACAAGAGCTAAAGAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043167 GO:0043169 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko03420 ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map03420 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

4.18

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	41 - 92	3.2e-16	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46600
fragaria_vesca	FvH4_7g17080
malus_domestica	MD01G1085500.v1.1 MD07G1154400.v1.1
prunus_persica	Prupe.2G193100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360491
rosa_laevigata	RLG00000027803
rosa_multiflora	Rmu_ssc0000337.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296050
rosa_rugosa	Rorug01G0278700
rosa_samantha	Rh1AG291400 Rh1BG256400 Rh1DG286200
rosa_wichuraiana	Rw1G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	117, 123
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	122, 123
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	2 cut(s)	27, 283
AluBI	AGCT	4 cut(s)	58, 85, 323, 337
AluI	AGCT	4 cut(s)	58, 85, 323, 337
Alw26I	GTCTC	3 cut(s)	225, 242, 299
AlwNI	CAGNNNCTG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	124, 230, 283
AvaII	GGWCC	1 cut(s)	31
BbvCI	CCTCAGC	1 cut(s)	198
BccI	CCATC	3 cut(s)	40, 221, 286
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	2 cut(s)	29, 285
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	3 cut(s)	225, 242, 299
Bme1390I	CCNGG	2 cut(s)	29, 285
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	29, 285
BmsI	GCATC	2 cut(s)	184, 289
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 123
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	2 cut(s)	29, 285
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	67, 186, 199
BseLI	CCNNNNNNNGG	2 cut(s)	122, 123
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	189, 269
BseNI	ACTGG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	122, 123
BsmAI	GTCTC	3 cut(s)	225, 242, 299
BsmBI	CGTCTC	2 cut(s)	225, 242
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	129, 220
BspACI	CCGC	2 cut(s)	117, 123
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	190, 270
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	129, 220
Bst2UI	CCWGG	2 cut(s)	29, 285
BstC8I	GCNNGC	2 cut(s)	121, 239
BstDEI	CTNAG	2 cut(s)	198, 278
BstF5I	GGATG	3 cut(s)	67, 186, 199
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	132, 223
BstMAI	GTCTC	3 cut(s)	225, 242, 299
BstMBI	GATC	2 cut(s)	129, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	29, 285
BstSCI	CCNGG	2 cut(s)	27, 283
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	67, 186, 199
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	121, 239
CaiI	CAGNNNCTG	1 cut(s)	34
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	31
CviAII	CATG	2 cut(s)	205, 268
CviJI	RGCY	8 cut(s)	58, 71, 85, 144, 277, 313, 323, 337
CviKI_1	RGCY	8 cut(s)	58, 71, 85, 144, 277, 313, 323, 337
DdeI	CTNAG	2 cut(s)	198, 278
DpnI	GATC	2 cut(s)	131, 222
DpnII	GATC	2 cut(s)	129, 220
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	154
EcoRII	CCWGG	2 cut(s)	27, 283
Esp3I	CGTCTC	2 cut(s)	225, 242
FaeI	CATG	2 cut(s)	208, 271
FaiI	YATR	3 cut(s)	88, 206, 269
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	2 cut(s)	204, 267
FauI	CCCGC	2 cut(s)	116, 124
FbaI	TGATCA	1 cut(s)	129
FokI	GGATG	3 cut(s)	74, 193, 206
GlaI	GCGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	208, 271
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	3 cut(s)	124, 230, 283
Hpy188I	TCNGA	2 cut(s)	82, 139
Hpy188III	TCNNGA	3 cut(s)	224, 326, 348
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	198, 278
Hsp92II	CATG	2 cut(s)	208, 271
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	129, 220
LmnI	GCTCC	1 cut(s)	6
LweI	GCATC	2 cut(s)	184, 289
MaeIII	GTNAC	1 cut(s)	36
MalI	GATC	2 cut(s)	131, 222
MboI	GATC	2 cut(s)	129, 220
MboII	GAAGA	3 cut(s)	160, 163, 308
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	61, 86, 145, 169, 184, 193, 267
MspR9I	CCNGG	2 cut(s)	29, 285
MvaI	CCWGG	2 cut(s)	29, 285
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	2 cut(s)	129, 220
NlaIII	CATG	2 cut(s)	208, 271
PceI	AGGCCT	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	283
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	2 cut(s)	27, 283
PspGI	CCWGG	2 cut(s)	27, 283
PspPI	GGNCC	1 cut(s)	31
PspPPI	RGGWCCY	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	129, 220
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	29, 285
SetI	ASST	8 cut(s)	36, 60, 87, 97, 137, 220, 325, 339
SfaNI	GCATC	2 cut(s)	184, 289
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	154
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	117, 123
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	27, 283
TaqI	TCGA	2 cut(s)	66, 100
TasI	AATT	1 cut(s)	154
TscAI	CASTG	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.