Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0016575

Physical Location & Seq

Genomic Coordinates Forward (+)

39190280 .. 39191768

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGTGGAGGCAAGCATCGTATGCGTAATGTGCCTCTTGCTGAACGATTCAATTCCAGAAACTTGAATGATGGTGTGCCAAGAAATCAGAGATTTAGTTTCGTACCAAGAAACCAAACTTCTGCACCAAGAATCAACCCAGTTGGAAATGAGAACCAAGCTTTAAATAATAATTATCATAACATGAATAATGTACCAAGAAACAGAGGATTCAATTTGGGAAGAAACTTGGACAATCTGTACATGAACGGACCGCCCCAGAACATGATTTTTGAACCAAGAAACATATGGGAAAATGATCCAAGAAACATACCCATTCAGAATCTGAATGCTGAAAACTATAGCCTGTACGCCACATTTTCAAGTTGCCACCCGGAAGTGACAAACACTGATGTTAGAAACTTTTTCCGGTGGACGTTTCCCAACTGTATAGTGCATCGGATCAAAATGGACCGTGATCGTCCCGCTCTGCACGCTTGGATTGAGTTCTATAATCCGGGAGCTGTCAATGAAATTCTGGGATACAGAGTTTATTCTAAGAGCTTTCGCATACTGGGAGGAAAATACATCTGGCTTAAAAGGTTTAACACAGCCTCCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043167 GO:0043169 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko03420 ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map03420 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

200

Amino Acids

23.46

Weight (kDa)

10.3

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46600
fragaria_vesca	FvH4_7g17080
malus_domestica	MD01G1085500.v1.1 MD07G1154400.v1.1
prunus_persica	Prupe.2G193100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360491
rosa_laevigata	RLG00000027803
rosa_multiflora	Rmu_ssc0000337.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296050
rosa_rugosa	Rorug01G0278700
rosa_samantha	Rh1AG291400 Rh1BG256400 Rh1DG286200
rosa_wichuraiana	Rw1G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	467
AciI	CCGC	2 cut(s)	254, 465
AclWI	GGATC	2 cut(s)	293, 449
AcsI	RAATTY	1 cut(s)	513
AfaI	GTAC	4 cut(s)	105, 195, 242, 350
AgsI	TTSAA	5 cut(s)	52, 67, 214, 275, 363
AluBI	AGCT	3 cut(s)	161, 503, 543
AluI	AGCT	3 cut(s)	161, 503, 543
AlwI	GGATC	2 cut(s)	293, 449
AlwNI	CAGNNNCTG	1 cut(s)	325
ApoI	RAATTY	1 cut(s)	513
AspS9I	GGNCC	2 cut(s)	251, 451
AsuC2I	CCSGG	2 cut(s)	374, 498
AvaII	GGWCC	2 cut(s)	251, 451
BccI	CCATC	1 cut(s)	65
BciVI	GTATCC	1 cut(s)	515
BcnI	CCSGG	2 cut(s)	374, 498
BfmI	CTRYAG	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	515
Bme1390I	CCNGG	2 cut(s)	374, 498
Bme18I	GGWCC	2 cut(s)	251, 451
BmgT120I	GGNCC	2 cut(s)	251, 451
BmrFI	CCNGG	2 cut(s)	374, 498
BmrI	ACTGGG	2 cut(s)	134, 563
BmsI	GCATC	2 cut(s)	25, 445
BmuI	ACTGGG	2 cut(s)	134, 563
BpuMI	CCSGG	2 cut(s)	374, 498
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	140, 558
BseNI	ACTGG	2 cut(s)	140, 558
BsgI	GTGCAG	2 cut(s)	108, 455
BsiSI	CCGG	3 cut(s)	374, 409, 497
BslFI	GGGAC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	298, 441, 457
BspACI	CCGC	2 cut(s)	254, 465
BspPI	GGATC	2 cut(s)	293, 449
BsrBI	CCGCTC	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	140, 558
BssMI	GATC	3 cut(s)	298, 441, 457
Bst4CI	ACNGT	2 cut(s)	428, 455
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	240
BstC8I	GCNNGC	2 cut(s)	14, 474
BstDEI	CTNAG	1 cut(s)	537
BstKTI	GATC	3 cut(s)	301, 444, 460
BstMBI	GATC	3 cut(s)	298, 441, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 31, 473
BstSCI	CCNGG	2 cut(s)	372, 496
BstSFI	CTRYAG	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	515
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	14, 474
CaiI	CAGNNNCTG	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	251, 451
CpoI	CGGWCCG	1 cut(s)	251
Csp6I	GTAC	4 cut(s)	104, 194, 241, 349
CspI	CGGWCCG	1 cut(s)	251
CviAII	CATG	4 cut(s)	184, 244, 265, 598
CviJI	RGCY	6 cut(s)	161, 345, 503, 543, 574, 593
CviKI_1	RGCY	6 cut(s)	161, 345, 503, 543, 574, 593
CviQI	GTAC	4 cut(s)	104, 194, 241, 349
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	3 cut(s)	300, 443, 459
DpnII	GATC	3 cut(s)	298, 441, 457
DraI	TTTAAA	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	251, 451
FaeI	CATG	4 cut(s)	187, 247, 268, 601
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	4 cut(s)	183, 243, 264, 597
FauI	CCCGC	1 cut(s)	472
FauNDI	CATATG	1 cut(s)	287
HapII	CCGG	3 cut(s)	374, 409, 497
Hin1II	CATG	4 cut(s)	187, 247, 268, 601
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	48, 132, 210, 322
HpaII	CCGG	3 cut(s)	374, 409, 497
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	4 cut(s)	90, 321, 327, 441
Hpy188III	TCNNGA	1 cut(s)	57
Hpy8I	GTNNAC	1 cut(s)	414
HpyCH4III	ACNGT	2 cut(s)	428, 455
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	3 cut(s)	125, 436, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 31, 473
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	187, 247, 268, 601
Kzo9I	GATC	3 cut(s)	298, 441, 457
LmnI	GCTCC	1 cut(s)	500
LweI	GCATC	2 cut(s)	25, 445
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	300, 443, 459
MbiI	CCGCTC	1 cut(s)	467
MboI	GATC	3 cut(s)	298, 441, 457
MboII	GAAGA	1 cut(s)	234
MluCI	AATT	4 cut(s)	52, 172, 214, 513
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	45, 200, 551
MseI	TTAA	3 cut(s)	164, 576, 585
MspI	CCGG	3 cut(s)	374, 409, 497
MspR9I	CCNGG	2 cut(s)	374, 498
Mva1269I	GAATGC	1 cut(s)	334
MwoI	GCNNNNNNNGC	3 cut(s)	22, 31, 473
NciI	CCSGG	2 cut(s)	374, 498
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	3 cut(s)	298, 441, 457
NlaIII	CATG	4 cut(s)	187, 247, 268, 601
NmuCI	GTSAC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	4 cut(s)	48, 132, 210, 322
PfoI	TCCNGGA	1 cut(s)	496
PspPI	GGNCC	2 cut(s)	251, 451
PstNI	CAGNNNCTG	1 cut(s)	325
RsaI	GTAC	4 cut(s)	105, 195, 242, 350
RsaNI	GTAC	4 cut(s)	104, 194, 241, 349
Rsr2I	CGGWCCG	1 cut(s)	251
RsrII	CGGWCCG	1 cut(s)	251
SaqAI	TTAA	3 cut(s)	164, 576, 585
Sau3AI	GATC	3 cut(s)	298, 441, 457
Sau96I	GGNCC	2 cut(s)	251, 451
ScrFI	CCNGG	2 cut(s)	374, 498
SetI	ASST	5 cut(s)	163, 419, 505, 545, 584
SfaNI	GCATC	2 cut(s)	25, 445
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	251, 451
Sse9I	AATT	4 cut(s)	52, 172, 214, 513
SsiI	CCGC	2 cut(s)	254, 465
StyD4I	CCNGG	2 cut(s)	372, 496
TaaI	ACNGT	2 cut(s)	428, 455
TaiI	ACGT	1 cut(s)	419
TasI	AATT	4 cut(s)	52, 172, 214, 513
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	4 cut(s)	48, 132, 210, 322
Tru1I	TTAA	3 cut(s)	164, 576, 585
Tru9I	TTAA	3 cut(s)	164, 576, 585
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	379
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	200, 260, 525
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	2 cut(s)	251, 451
XapI	RAATTY	1 cut(s)	513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.