Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0016575

Physical Location & Seq

Genomic Coordinates Forward (+)

19192644 .. 19193030

Gene Structure 387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1085500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAAAACAATGGCACCACCACAAGGAAGTCCGCAGCAGCAACTGAATACCAAGACTTGCTGCCAGTCATGGCAGAGAAGCTGGACGTGGAGACTTTCGTGTCCGAACTATGTGGAGGTTTCCGGCTTCTGGCGGACCCCGAGTGGGGTTTGATCACGTCGGAGAGCCTGAAGAAGAATTCGGCGCTTCTCGGGATGGAGGGGATGAGCAAGGAGGATGCTGAAGGTATGGTTAGGGAAGGAGATCTTGATGGAGATGGTGCGCTCAGTGAGACTGAGTTTTGTATACTGATGGTGAGGCTTAGTCCTGGGATTATGGAAGATGCTGAGACATGGCTTGAAAAAGCACTTGATCAAGAATCCAACAAGTCATCTGATCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043167 GO:0043169 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko03420 ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map03420 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

129

Amino Acids

13.98

Weight (kDa)

4.15

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_8	PF13833	50 - 100	5.3e-16	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46600
fragaria_vesca	FvH4_7g17080
malus_domestica	MD01G1085500.v1.1 MD07G1154400.v1.1
prunus_persica	Prupe.2G193100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360491
rosa_laevigata	RLG00000027803
rosa_multiflora	Rmu_ssc0000337.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296050
rosa_rugosa	Rorug01G0278700
rosa_samantha	Rh1AG291400 Rh1BG256400 Rh1DG286200
rosa_wichuraiana	Rw1G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	14
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	2 cut(s)	33, 134
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	2 cut(s)	191, 243
AfiI	CCNNNNNNNGG	4 cut(s)	24, 130, 145, 146
AgsI	TTSAA	1 cut(s)	341
AjiI	CACGTC	2 cut(s)	88, 159
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	3 cut(s)	86, 266, 323
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	2 cut(s)	140, 191
ApeKI	GCWGC	3 cut(s)	35, 38, 61
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	187, 265
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	2 cut(s)	140, 191
AvaII	GGWCC	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	47, 48, 50
BccI	CCATC	4 cut(s)	190, 245, 251, 286
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	3 cut(s)	153, 352, 376
BcoDI	GTCTC	3 cut(s)	86, 266, 323
BfoI	RGCGCY	1 cut(s)	188
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	3 cut(s)	36, 39, 62
BlsI	GCNGC	3 cut(s)	37, 40, 63
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	1 cut(s)	136
BmeT110I	CYCGRG	2 cut(s)	140, 191
BmgBI	CACGTC	2 cut(s)	88, 159
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	16, 138
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	208, 313
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 130, 145, 146
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	3 cut(s)	201, 210, 223
BseLI	CCNNNNNNNGG	4 cut(s)	24, 130, 145, 146
BseMII	CTCAG	3 cut(s)	267, 280, 318
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	47, 48, 50
BshNI	GGYRCC	1 cut(s)	14
BsiHKCI	CYCGRG	2 cut(s)	140, 191
BsiSI	CCGG	1 cut(s)	124
BslI	CCNNNNNNNGG	4 cut(s)	24, 130, 145, 146
BsmAI	GTCTC	3 cut(s)	86, 266, 323
BsoBI	CYCGRG	2 cut(s)	140, 191
Bsp143I	GATC	4 cut(s)	153, 244, 352, 376
BspACI	CCGC	2 cut(s)	33, 134
BspCNI	CTCAG	3 cut(s)	268, 279, 319
BspLI	GGNNCC	2 cut(s)	16, 138
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	4 cut(s)	153, 244, 352, 376
BssNAI	GTATAC	1 cut(s)	287
Bst1107I	GTATAC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	266, 276, 302, 327
BstF5I	GGATG	3 cut(s)	201, 210, 223
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	2 cut(s)	187, 265
BstKTI	GATC	4 cut(s)	156, 247, 355, 379
BstMAI	GTCTC	3 cut(s)	86, 266, 323
BstMBI	GATC	4 cut(s)	153, 244, 352, 376
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstV1I	GCAGC	3 cut(s)	47, 48, 50
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	287
BtrI	CACGTC	2 cut(s)	88, 159
BtsCI	GGATG	3 cut(s)	201, 210, 223
BtsIMutI	CAGTG	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	2 cut(s)	187, 265
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	2 cut(s)	70, 333
CviJI	RGCY	5 cut(s)	82, 127, 168, 301, 337
CviKI_1	RGCY	5 cut(s)	82, 127, 168, 301, 337
DdeI	CTNAG	4 cut(s)	266, 276, 302, 327
DpnI	GATC	4 cut(s)	155, 246, 354, 378
DpnII	GATC	4 cut(s)	153, 244, 352, 376
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	191, 243
Eco88I	CYCGRG	2 cut(s)	140, 191
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	73, 336
FaiI	YATR	6 cut(s)	71, 112, 230, 287, 317, 334
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	2 cut(s)	69, 332
FbaI	TGATCA	3 cut(s)	153, 352, 376
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	3 cut(s)	36, 39, 62
FokI	GGATG	3 cut(s)	208, 217, 230
Fsp4HI	GCNGC	3 cut(s)	36, 39, 62
GlaI	GCGC	2 cut(s)	186, 264
GluI	GCNGC	3 cut(s)	36, 39, 62
HaeII	RGCGCY	1 cut(s)	188
HapII	CCGG	1 cut(s)	124
HhaI	GCGC	2 cut(s)	187, 265
Hin1II	CATG	2 cut(s)	73, 336
Hin6I	GCGC	2 cut(s)	185, 263
HinP1I	GCGC	2 cut(s)	185, 263
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	3 cut(s)	106, 163, 376
Hpy188III	TCNNGA	3 cut(s)	193, 248, 356
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	2 cut(s)	218, 233
HpyCH4IV	ACGT	2 cut(s)	87, 158
HpyF3I	CTNAG	4 cut(s)	266, 276, 302, 327
HpySE526I	ACGT	2 cut(s)	87, 158
Hsp92II	CATG	2 cut(s)	73, 336
HspAI	GCGC	2 cut(s)	185, 263
Ksp22I	TGATCA	3 cut(s)	153, 352, 376
Kzo9I	GATC	4 cut(s)	153, 244, 352, 376
LpnPI	CCDG	7 cut(s)	68, 78, 116, 137, 182, 294, 321
Lsp1109I	GCAGC	3 cut(s)	47, 48, 50
LweI	GCATC	2 cut(s)	208, 313
MaeII	ACGT	2 cut(s)	87, 158
MalI	GATC	4 cut(s)	155, 246, 354, 378
MboI	GATC	4 cut(s)	153, 244, 352, 376
MboII	GAAGA	3 cut(s)	184, 187, 332
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	1 cut(s)	178
MmeI	TCCRAC	2 cut(s)	141, 387
MnlI	CCTC	4 cut(s)	110, 193, 208, 291
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
NdeII	GATC	4 cut(s)	153, 244, 352, 376
NlaIII	CATG	2 cut(s)	73, 336
NlaIV	GGNNCC	2 cut(s)	16, 138
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	37, 40, 63
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	16, 138
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	244
SatI	GCNGC	3 cut(s)	36, 39, 62
Sau3AI	GATC	4 cut(s)	153, 244, 352, 376
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	309
SetI	ASST	5 cut(s)	84, 90, 121, 161, 229
SfaNI	GCATC	2 cut(s)	208, 313
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	2 cut(s)	33, 134
StyD4I	CCNGG	1 cut(s)	307
TaiI	ACGT	2 cut(s)	90, 161
TasI	AATT	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	3 cut(s)	35, 38, 61
TspRI	CASTG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.