Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016575

Physical Location & Seq

Genomic Coordinates Forward (+)

23178686 .. 23179669

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G193100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAACCAATGGCACCGCAAGAAAGACCACATCAACAACAGAATACCAGGACTTGTTGCCAGTTATGGCAGAGAAGCTGGACGTGGAGAGCTTTGTGTCCGAGTTATGCGGAGGTTTTCGGCTTCTGGCAGACCCCGGAAGAGGGTTGATCACCCCGGAGAGCCTGAAGAAGAATTCGGCGTATCTCGGCATGGAGGGGATGAGCAAAGAGGACGCGGAGGCGATGGTTGGGGAAGGAGATCTTGATGGAGATGGTGCACTCAATGAGACTGAGTTTTGTATCCTGATGGTGAGGCTGAGTCCTGAGATGATGGAAGATGCTGAGACATGGCTTGAGAAAGCTCTTGATCAAGAAACTCAAAAGTCCTCAAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005509 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0016043 GO:0030154 GO:0032502 GO:0032989 GO:0043167 GO:0043169 GO:0046872 GO:0048468 GO:0048856 GO:0048869 GO:0071840 GO:0090558 GO:0090626

KEGG Pathways

Metabolic & Signaling

ko03420 ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map03420 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_8

Protein Analysis

127

Amino Acids

13.77

Weight (kDa)

4.19

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46600
fragaria_vesca	FvH4_7g17080
malus_domestica	MD01G1085500.v1.1 MD07G1154400.v1.1
prunus_persica	Prupe.2G193100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0360491
rosa_laevigata	RLG00000027803
rosa_multiflora	Rmu_ssc0000337.1_g000010
rosa_roxburghii	Rroxscaffold_4G00296050
rosa_rugosa	Rorug01G0278700
rosa_samantha	Rh1AG291400 Rh1BG256400 Rh1DG286200
rosa_wichuraiana	Rw1G025810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	14
AccII	CGCG	1 cut(s)	218
AciI	CCGC	3 cut(s)	18, 111, 218
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	143, 144
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	3 cut(s)	79, 93, 344
AluI	AGCT	3 cut(s)	79, 93, 344
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	2 cut(s)	263, 320
Alw44I	GTGCAC	1 cut(s)	258
ApaLI	GTGCAC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	175
AsuC2I	CCSGG	2 cut(s)	138, 158
AsuHPI	GGTGA	2 cut(s)	145, 304
BaeGI	GKGCMC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	5 cut(s)	220, 242, 248, 283, 307
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	293
BclI	TGATCA	2 cut(s)	150, 349
BcnI	CCSGG	2 cut(s)	138, 158
BcoDI	GTCTC	2 cut(s)	263, 320
BfuI	GTATCC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	241
Bme1390I	CCNGG	3 cut(s)	50, 138, 158
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	3 cut(s)	50, 138, 158
BmsI	GCATC	1 cut(s)	310
BpuEI	CTTGAG	2 cut(s)	355, 356
BpuMI	CCSGG	2 cut(s)	138, 158
BsaJI	CCNNGG	2 cut(s)	136, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 144
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	2 cut(s)	136, 156
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	143, 144
BseMII	CTCAG	4 cut(s)	264, 290, 297, 315
BseNI	ACTGG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	218
BshNI	GGYRCC	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	262
BsiSI	CCGG	2 cut(s)	138, 158
BslI	CCNNNNNNNGG	2 cut(s)	143, 144
BsmAI	GTCTC	2 cut(s)	263, 320
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	150, 241, 349
BspACI	CCGC	3 cut(s)	18, 111, 218
BspCNI	CTCAG	4 cut(s)	265, 291, 298, 316
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	136, 156
BssMI	GATC	3 cut(s)	150, 241, 349
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	136
BstDEI	CTNAG	4 cut(s)	273, 299, 306, 324
BstF5I	GGATG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	218
BstKTI	GATC	3 cut(s)	153, 244, 352
BstMAI	GTCTC	2 cut(s)	263, 320
BstMBI	GATC	3 cut(s)	150, 241, 349
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	48, 136, 156
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	207
CseI	GACGC	1 cut(s)	224
CviAII	CATG	2 cut(s)	193, 330
CviJI	RGCY	7 cut(s)	79, 93, 124, 165, 298, 334, 344
CviKI_1	RGCY	7 cut(s)	79, 93, 124, 165, 298, 334, 344
DdeI	CTNAG	4 cut(s)	273, 299, 306, 324
DpnI	GATC	3 cut(s)	152, 243, 351
DpnII	GATC	3 cut(s)	150, 241, 349
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	2 cut(s)	196, 333
FaiI	YATR	4 cut(s)	68, 109, 194, 331
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	2 cut(s)	192, 329
FbaI	TGATCA	2 cut(s)	150, 349
FokI	GGATG	1 cut(s)	214
HapII	CCGG	2 cut(s)	138, 158
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	196, 333
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	2 cut(s)	138, 158
HphI	GGTGA	2 cut(s)	145, 304
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	5 cut(s)	245, 286, 305, 347, 353
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	260
HpyF3I	CTNAG	4 cut(s)	273, 299, 306, 324
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	196, 333
Ksp22I	TGATCA	2 cut(s)	150, 349
Kzo9I	GATC	3 cut(s)	150, 241, 349
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	1 cut(s)	84
MalI	GATC	3 cut(s)	152, 243, 351
MboI	GATC	3 cut(s)	150, 241, 349
MboII	GAAGA	4 cut(s)	153, 181, 184, 329
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	7 cut(s)	107, 137, 190, 205, 214, 288, 379
MspI	CCGG	2 cut(s)	138, 158
MspR9I	CCNGG	3 cut(s)	50, 138, 158
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	218
NciI	CCSGG	2 cut(s)	138, 158
NdeII	GATC	3 cut(s)	150, 241, 349
NlaIII	CATG	2 cut(s)	196, 333
NlaIV	GGNNCC	1 cut(s)	16
NmeAIII	GCCGAG	1 cut(s)	168
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	241
Sau3AI	GATC	3 cut(s)	150, 241, 349
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	3 cut(s)	50, 138, 158
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	5 cut(s)	81, 87, 95, 118, 346
SfaNI	GCATC	1 cut(s)	310
SmlI	CTYRAG	2 cut(s)	335, 370
SmoI	CTYRAG	2 cut(s)	335, 370
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	3 cut(s)	18, 111, 218
StyD4I	CCNGG	3 cut(s)	48, 136, 156
TaiI	ACGT	1 cut(s)	87
TasI	AATT	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	258
XapI	RAATTY	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.