FvH4_7g17420

Putative AtpZ or ATP-synthase-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013713
Physical Location & Seq
Reverse (-)
14810653 .. 14811556
904 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17420.t2

Sequence Viewer

Length: 357 bp
ATGGCATCGGACAAAGAAGAGAAAGACACGATGAGTTACCCGGAACAGGAGAGATCAGTGGTGAAGACAAGAGCAGCTTGCTTTGGTTCGATTCTGGTGAGCGTTGCAGGAGGAATCTTATTAGGTTGGTGGGAGTATCAGTATCATCCTTCATATCGTCAACTGTGGATGGTGCCCTTTGGTCTTATTCTATTTGCTACACCAGTGATTGTTTGGTTCTCTTTGGTGGTCTCTCATATCTGTAATTCAAAAGATGGTGATGATGGCACAAGGATGAGTCAACCCGTTTATGCACTCAGTAACTCCGTTTCTGCCAAGAAAGATGAGCAATGGAATAACCATGTAGATCATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_Z

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

5.72

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Z PF16594 27 - 78 1.2e-26 Putative AtpZ or ATP-synthase-associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 249
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 3 cut(s) 73, 109, 269
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 1 cut(s) 86
BccI CCATC 3 cut(s) 163, 248, 257
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 235
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 335
BseGI GGATG 3 cut(s) 145, 174, 279
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 203
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 172
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 53, 346
BspCNI CTCAG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 203
BssMI GATC 2 cut(s) 53, 346
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 145, 174, 279
BstKTI GATC 2 cut(s) 56, 349
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 2 cut(s) 53, 346
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 71
BtsCI GGATG 3 cut(s) 145, 174, 279
BtsIMutI CAGTG 2 cut(s) 63, 210
Cac8I GCNNGC 1 cut(s) 79
CviAII CATG 2 cut(s) 341, 350
CviJI RGCY 1 cut(s) 77
CviKI_1 RGCY 1 cut(s) 77
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 55, 348
DpnII GATC 2 cut(s) 53, 346
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 235
FaeI CATG 2 cut(s) 344, 353
FaiI YATR 6 cut(s) 154, 237, 291, 342, 351, 355
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FatI CATG 2 cut(s) 340, 349
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 132, 181, 286
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
HapII CCGG 1 cut(s) 41
Hin1II CATG 2 cut(s) 344, 353
HincII GTYRAC 2 cut(s) 161, 281
HindII GTYRAC 2 cut(s) 161, 281
HinfI GANTC 3 cut(s) 91, 114, 277
HpaII CCGG 1 cut(s) 41
HphI GGTGA 3 cut(s) 73, 109, 269
Hpy166II GTNNAC 2 cut(s) 161, 281
Hpy188I TCNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 161, 281
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 2 cut(s) 107, 293
HpyF3I CTNAG 1 cut(s) 296
Hsp92II CATG 2 cut(s) 344, 353
Kzo9I GATC 2 cut(s) 53, 346
LpnPI CCDG 5 cut(s) 32, 54, 80, 93, 216
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 35, 299
MalI GATC 2 cut(s) 55, 348
MboI GATC 2 cut(s) 53, 346
MboII GAAGA 2 cut(s) 29, 76
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 244
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 41
NciI CCSGG 1 cut(s) 41
NdeII GATC 2 cut(s) 53, 346
NlaIII CATG 2 cut(s) 344, 353
NlaIV GGNNCC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 91, 114
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 53, 346
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 177
SetI ASST 2 cut(s) 79, 127
SfaNI GCATC 1 cut(s) 14
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 89
TasI AATT 1 cut(s) 244
TfiI GAWTC 2 cut(s) 91, 114
TscAI CASTG 2 cut(s) 63, 210
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 141
TspGWI ACGGA 1 cut(s) 295
TspRI CASTG 2 cut(s) 63, 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.