Rorug01G0282400

Putative AtpZ or ATP-synthase-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013713
Physical Location & Seq
Forward (+)
39531200 .. 39533287
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0282400.1

Sequence Viewer

Length: 660 bp
ATGAGCTCCAACACAACCGAGACGAAGAAGGAGAAGAAGGGTCCTCCTCAAATTGTTAAATTGAATAAAGCTTTGGCTTTGGCCGAAAAATGGGTGAGTAACATGAGTAAACTGCCAGCAGAAGATGAGTCTTTTGAGACACAGAGTCGACCTGCTAGGCTTGGACTAGGTGCTAAAGTTCCCCGTGCATCCACATTTGTGCCTTCAGATGATCCCCTTGAAAGAAAGCTATATTACAAGTTGAATGCTCAAAAGAGAAAAGCTGCCAAAATTGCAGAGGAGTTAGCACCAGCTGCTGCAGATGGTGATGATGACGATGAAGATAATGAAGACAGCAGAACCAGTGCGTTTGAGAAGAAAAAGAGAGCAGCTAATCCACTGAGCCCACCTTTAGGGAAAAAGAAAAGGAGAAAAAGCACAACTCTACATTACCGCCTCAACATTGAGGCATCTGAGTTCTTGCAAGGAGACTTTGCAAACTTGATATCTGATCCCCAACCATCAGGGATGTTTCATCTGATGCCTGCTGCCCGGGATGCTCCTTTAGCAATGGGGCATATTCTATACTATCTACATGATTTCAGTTTACGAAGTTACAAAGCCATGTCATATTGGATCCAGGATACTCCAGGAAAGCTGATGAAGACTTCCTCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_Z

Protein Analysis

219

Amino Acids

24.49

Weight (kDa)

9.28

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3245 PF11595 17 - 136 2.9e-12 Protein of unknown function (DUF3245)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccI GTMKAC 1 cut(s) 148
AciI CCGC 1 cut(s) 433
AclWI GGATC 4 cut(s) 206, 485, 610, 623
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 189
AfiI CCNNNNNNNGG 2 cut(s) 90, 392
AgsI TTSAA 3 cut(s) 64, 221, 244
AhdI GACNNNNNGTC 1 cut(s) 144
AjnI CCWGG 2 cut(s) 618, 628
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 7 cut(s) 6, 71, 229, 263, 293, 371, 637
AluI AGCT 7 cut(s) 6, 71, 229, 263, 293, 371, 637
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 14, 131, 462
AlwI GGATC 4 cut(s) 206, 485, 610, 623
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 531
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 5 cut(s) 263, 293, 296, 368, 527
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 2 cut(s) 532, 533
AsuHPI GGTGA 2 cut(s) 106, 317
AvaI CYCGRG 1 cut(s) 531
AvaII GGWCC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 615
BanII GRGCYC 2 cut(s) 8, 386
BbsI GAAGAC 2 cut(s) 336, 650
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 5 cut(s) 250, 280, 283, 380, 514
BccI CCATC 2 cut(s) 296, 508
BciT130I CCWGG 2 cut(s) 620, 630
BciVI GTATCC 1 cut(s) 616
BcnI CCSGG 2 cut(s) 532, 533
BcoDI GTCTC 3 cut(s) 14, 131, 462
BfaI CTAG 2 cut(s) 156, 167
BfmI CTRYAG 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 5 cut(s) 264, 294, 297, 369, 528
BlsI GCNGC 5 cut(s) 265, 295, 298, 370, 529
Bme1390I CCNGG 4 cut(s) 532, 533, 620, 630
Bme18I GGWCC 1 cut(s) 41
BmeRI GACNNNNNGTC 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 42, 617
BmrFI CCNGG 4 cut(s) 532, 533, 620, 630
BmsI GCATC 4 cut(s) 197, 458, 510, 526
BpiI GAAGAC 2 cut(s) 336, 650
BpmI CTGGAG 1 cut(s) 612
BpuMI CCSGG 2 cut(s) 532, 533
BsaJI CCNNGG 1 cut(s) 531
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 392
Bse1I ACTGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 2 cut(s) 620, 630
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 3 cut(s) 188, 513, 541
BseLI CCNNNNNNNGG 2 cut(s) 90, 392
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 371, 444
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 2 cut(s) 36, 293
BseXI GCAGC 5 cut(s) 250, 280, 283, 380, 514
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 1 cut(s) 532
BslI CCNNNNNNNGG 2 cut(s) 90, 392
BsmAI GTCTC 3 cut(s) 14, 131, 462
BsmBI CGTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 83
BsoBI CYCGRG 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 8, 386
Bsp143I GATC 3 cut(s) 211, 490, 615
BspACI CCGC 1 cut(s) 433
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 2 cut(s) 372, 445
BspLI GGNNCC 2 cut(s) 42, 617
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 4 cut(s) 206, 485, 610, 623
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 3 cut(s) 211, 490, 615
Bst2UI CCWGG 2 cut(s) 620, 630
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 117, 525
BstDEI CTNAG 2 cut(s) 380, 453
BstF5I GGATG 3 cut(s) 188, 513, 541
BstKTI GATC 3 cut(s) 214, 493, 618
BstMAI GTCTC 3 cut(s) 14, 131, 462
BstMBI GATC 3 cut(s) 211, 490, 615
BstMWI GCNNNNNNNGC 4 cut(s) 272, 293, 536, 545
BstNI CCWGG 2 cut(s) 620, 630
BstSCI CCNGG 4 cut(s) 530, 531, 618, 628
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 250, 280, 283, 380, 514
BstV2I GAAGAC 2 cut(s) 336, 650
BstX2I RGATCY 1 cut(s) 615
BstYI RGATCY 1 cut(s) 615
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 3 cut(s) 188, 513, 541
BtsIMutI CAGTG 2 cut(s) 349, 377
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 117, 525
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 41
Cfr9I CCCGGG 1 cut(s) 531
CviAII CATG 3 cut(s) 103, 575, 604
DdeI CTNAG 2 cut(s) 380, 453
DpnI GATC 3 cut(s) 213, 492, 617
DpnII GATC 3 cut(s) 211, 490, 615
DriI GACNNNNNGTC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 8, 386
Eco32I GATATC 1 cut(s) 486
Eco47I GGWCC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 618, 628
EcoRV GATATC 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 8, 386
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 3 cut(s) 106, 578, 607
FaiI YATR 7 cut(s) 104, 232, 558, 565, 576, 605, 610
FatI CATG 3 cut(s) 102, 574, 603
FblI GTMKAC 1 cut(s) 148
Fnu4HI GCNGC 5 cut(s) 264, 294, 297, 369, 528
FokI GGATG 3 cut(s) 175, 520, 548
FriOI GRGCYC 2 cut(s) 8, 386
Fsp4HI GCNGC 5 cut(s) 264, 294, 297, 369, 528
FspBI CTAG 2 cut(s) 156, 167
GluI GCNGC 5 cut(s) 264, 294, 297, 369, 528
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 532
Hin1II CATG 3 cut(s) 106, 578, 607
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 128, 145
HpaII CCGG 1 cut(s) 532
HphI GGTGA 2 cut(s) 106, 317
Hpy166II GTNNAC 3 cut(s) 110, 149, 587
Hpy188I TCNGA 5 cut(s) 208, 454, 490, 519, 655
Hpy8I GTNNAC 3 cut(s) 110, 149, 587
HpyAV CCTTC 3 cut(s) 22, 31, 213
HpyCH4V TGCA 5 cut(s) 188, 275, 299, 463, 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 293, 536, 545
HpyF3I CTNAG 2 cut(s) 380, 453
Hsp92II CATG 3 cut(s) 106, 578, 607
Kzo9I GATC 3 cut(s) 211, 490, 615
LmnI GCTCC 2 cut(s) 11, 544
Lsp1109I GCAGC 5 cut(s) 250, 280, 283, 380, 514
LweI GCATC 4 cut(s) 197, 458, 510, 526
MaeI CTAG 2 cut(s) 156, 167
MaeIII GTNAC 2 cut(s) 98, 593
MalI GATC 3 cut(s) 213, 492, 617
MboI GATC 3 cut(s) 211, 490, 615
MboII GAAGA 7 cut(s) 37, 46, 134, 332, 341, 367, 655
MflI RGATCY 1 cut(s) 615
MhlI GDGCHC 2 cut(s) 8, 386
MluCI AATT 3 cut(s) 51, 59, 270
MlyI GAGTC 2 cut(s) 137, 154
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 5 cut(s) 54, 57, 271, 439, 446
MseI TTAA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 532
MspR9I CCNGG 4 cut(s) 532, 533, 620, 630
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 2 cut(s) 620, 630
MwoI GCNNNNNNNGC 4 cut(s) 272, 293, 536, 545
NciI CCSGG 2 cut(s) 532, 533
NdeII GATC 3 cut(s) 211, 490, 615
NlaIII CATG 3 cut(s) 106, 578, 607
NlaIV GGNNCC 2 cut(s) 42, 617
OliI CACNNNNGTG 1 cut(s) 197
PctI GAATGC 1 cut(s) 250
PfoI TCCNGGA 2 cut(s) 618, 628
PkrI GCNGC 5 cut(s) 265, 295, 298, 370, 529
PleI GAGTC 2 cut(s) 136, 153
PpsI GAGTC 2 cut(s) 136, 153
PpuMI RGGWCCY 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 618, 628
PspGI CCWGG 2 cut(s) 618, 628
PspN4I GGNNCC 2 cut(s) 42, 617
PspPI GGNCC 1 cut(s) 41
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 615
PvuII CAGCTG 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 197
SacI GAGCTC 1 cut(s) 8
SalI GTCGAC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 5 cut(s) 264, 294, 297, 369, 528
Sau3AI GATC 3 cut(s) 211, 490, 615
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 137, 154
ScrFI CCNGG 4 cut(s) 532, 533, 620, 630
SduI GDGCHC 2 cut(s) 8, 386
SfaNI GCATC 4 cut(s) 197, 458, 510, 526
SfcI CTRYAG 1 cut(s) 297
SinI GGWCC 1 cut(s) 41
SmaI CCCGGG 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 197
Sse9I AATT 3 cut(s) 51, 59, 270
SsiI CCGC 1 cut(s) 433
SspMI CTAG 2 cut(s) 156, 167
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 530, 531, 618, 628
TaqI TCGA 1 cut(s) 148
TasI AATT 3 cut(s) 51, 59, 270
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 349, 384
TseI GCWGC 5 cut(s) 263, 293, 296, 368, 527
TspDTI ATGAA 4 cut(s) 333, 342, 503, 656
TspMI CCCGGG 1 cut(s) 531
TspRI CASTG 2 cut(s) 349, 384
VpaK11BI GGWCC 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 2 cut(s) 156, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.