Rorug01G0282300

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004169
Physical Location & Seq
Reverse (-)
39512900 .. 39526082
13183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0282300.1

Sequence Viewer

Length: 6696 bp
ATGCAAAGGTATCATGCCACCGGCTTGACTGGTGGAGTTAGTAACAACACAATAGGTGGGGCATCAGGAAGGGATTCTGTCCGAGCGGAATCAGCTACACTGCCAGCTCACTTACCTTTAAATTCTAGACTTGGGCCACCTGATTTCCATCCCCAAACCCCAAATTGCCCAGAGGAGACGCTTACCAGGGAATATGTGCAATCTGGATACAGGGAGACTGTTGAAGGAATTGAGGAGGCTAGAGAGATATCACTTAGTCAGGCCCAACTTTTCAACAAGTCTCTTGTCTTCAGGTGTAGAGAGGCAATCAAAAAACGTCTTAGAGCCATAAATGAATCTCGTGCTCAAAAGAGGAAGGCTGGTCAAGTATATGGTGTTCCTCTTGCTGATTCACTCTTAACAAAGCCTGGTGTTTTTCCTGAACAAAGGCCCTGTGGTGACGACTTACGAAAAAAATGGATTGAGGGTTTATCACAACAACACAAACGCTTGCGTTCATTGGCTGATCATGTTCCTCATGGGTATAGGAAAAGATCTCTATTTGAAGTTCTTACAAGGAATAATGTTCCATTGCTGAGAGCAACTTGGTTTGTTAAAGTCACTTATCTTAATCAGATCCGGCCAGGTTCTTCTAGTATTTCTTCTGGGATACCTGATAAAACTCAGTTGTCTCGCACAGAGCTCTGGACCAAAGATATCATTGAATACTTGCAGTACCTTCTCGATGAATTCTTTTCAAGAAACAGTTCACTTCCTGGTTCACACAACAGAGATCGATCGCAACAAATGCTTTATGCTGGGTCAGTATCACAACGGAGTGATCCAGCATCATCAGTCCTTGATGGTGATGAGCCTTCCCTACATTTCAAGTGGTGGTATGTGGTGCGGCTCCTGCAATGGCATCATGCTGAAGGGCTGCTTCTTCCTACACTTGTTATTGAATGGGTTCTACGTCAACTGCAGGAGAAGGAATTGCTCGAGATTGTGCAGTTGCTTTTGCCTATTATATATGGTGTTTTGGAGACTGTTGTCTTATCTCAAACTTATGTGCGCAATCTTGTCGGGACAGCTGTCCGTTTCATACGCGAACCTTCTCAAGGTGGATCTGATCTTGTGGATAACTCCAGAAGGGCGTATACAGTGTCTGCTCTGGTGGAGATGCTTCGTTATTTAATACTGTCTGTACCTGACTCATTTGTAGCTTTGGATTGCTTTCCTCTACCACCATGTGTAGTCTCTTATGTAGTAAACGATGGAAGTTTACAGAAGATGTCTGAGGATGTGAGAAAGATTAAAATTGGGTCAGCAGAAGTTGCTTCTGTATTCAGAAGTAAATCTTTTGATGCTCAATATCAATCCTTGGCCTTTGATCATGTTGTTTCATCCATTCAGAAGCGTGCTGACAATCTTGAAAAGGCTGCAAGCCCTAGCTATCCAGGCCATAGTATTGCTAAAGCTGTACAGGCCCTAGATAGGTCTCTTGCGCAGGGGGATGTTCTTGGGGTATATAGATTTCTGTTTGAAGATCCTTGCGATGGAATTATAAATGAAAGTTGGGTTGCAGAAGTTAGTCCTTGCTTGAGAACATCATTGAAATGGATTGGTACTGTGAACTTGTCATTTGTTTGTTCGGTATTTTTCCTTTGTGAGTGGGCAACTTGTGGTTTCAGGGATTTTCGAACCGCTCCTCCTTGTGAGCTAAAATTTACTGGCAGAAAAGATTTTTCTCAGGTACACATTGCAACTCGGCTTTTGATGCTAAAGATCCGAGACTTACAAAGTTCACCTCAACATAAGAATGACAACCCTGCTAAACGTTCCATTCAGCAGATTAATATTCCTGTCAGAAGTTCCATGGGAAGTTCTTATGAATCTAAAAATAAGTCAAGAAGTGTGCACCAGAGAAGTACAAAATCATCAAATATATTTGAGAGCCCGGGCCCTTTACATGATGTCATAGTTTGTTGGATTGATCAACATGATGCAGGCAAAGGAGAAGGTTTGAAGCGCCTTCAATTTCTTGTGATTGAACTCATACGTTCTGGTATTTTTTACCCCCATGTCTATGTTAGACAGCTGATTGTTAGTGGCATTATGGATATAAATGGACCAGTGACTGAATCAGACAGAAGGAAGAGGCATTATCAGATCTTGAAGTTGTTGCCTGGGGTCTTTGTGCATGATGCTCTGGAAGAAGCAGCGGTTGCTGAAGGCCCAAAACTTTTGGAGGCTATGAGTTCTTATTCAAATGAACGGCGCCTCATACTTAATGGGTTCCTTGGTGATCAAAATAAAAATTTGAGTATGAAGTCAGCTCTGAAGCAAAAGAACAATGCCATCACTGGAAAGGATGGTGGTTTGCCCATTTCTGCTGATCAGTGGAAGACTGTTGAGTTGTCATCCAGCATATTGTCTGGCAAAAGTGGCAAGAGGGGCAAAAGTGATGCTGATGTTGAAGAACTAAAGGAAGCAATCTCACTACTGTTACAACTGCCATATAGTTCCACCCCACCAACAGATACAGGACTTGAAGAGTCCCAAGGGAGTGTGAAGAGGCCTTTTGGGTCAATCTCTAACAAGATGGATCTTGGAGAAGGCACCCCTGGGTGTGAAGAATGCAGAAGAGCAAAGAGGCAAAAAGTGAGTGACGAAAGGAGCTCATATATCCAAGGAAATTCTCCAATTCCTTCAGATGATGAAGATACTTGGTGGATGAGGAAGAGACCTAAATCCTCAGAGCCGTTGAAGGTTGATCCACCAGTCAAGCTAACAAAACAGGTATCTAGGAATCGGCAGAAAATAGTGCGCAAAACTCAAAGTCTTGCTCAACTAGCAGCTGCTAGGATTGAAGGGAGCCAGGGAGCTTCTACAAGTCATGTCTGCAATAATAAGATAAGTTGTCCTCATCATAGATCTGGACTAGAGGGAGAACCTCCGAAGCCTACAGATACGACCAAAATGAACCATGCTGGAGATATTGTTTCTATTGGAAAAGCTTTAAAGCGGCTGCGATTTGCAGAGAAGAGGACTATTACTGTTTGGTTAATGACTAATATCAGGCAGCTTGTTGAAGAGACTGAAAAGACAATTGCTAAGGTTGGCCAGTTTGGTAGGAATTTCACAGCAGTTGATGATAGGAGCTCCATACGGTGGAAGCTCGGTGAGGATGAACTTTCTGCTGCACTATATTTAATGGATGTTTCAGATGATTTAGTTTCAGCAGTAAAGTTTCTTCTTTGGCTGCTGCCAAAGGTTATTACTAGCCCCAGTTCTACTATCCATAGTGGGAGAAACATTCTGCTGCTGCCAAGAAATGTTGAAGGCCAAGTATGTGAAGTTGGGGAGGCATTTCTAATATCGTCCCTCCGAAGGTATGAGAACATACTTCTTGCAACAGATCTCATTCCAGAAGTCTTATCGGCAACAATGCTCCGTGCTTCAGCAGTGGTGGCATCTAGCGGAAGAGTTTCTGGTTCGGCTGCCTTAGTTTACAGTCGGCATCTGTTGAAGCGGTATGGCAATGTGGCTAGTGTGATTGAATGGGAGAAGAGTTTCAAGGTAACATGTGATAAGAGGCTTTATTCTGAACTTGAATCTGGGCAAACAGTGGATGGAGAGTTAGGGTTCGCGCTTGGTGTTCCATCAGGAGTTGAGGATCTTGATGATTATTTTCGCCAAAAGATTAGTGGTGTCCGGTTATCTCGGGTGGGTTTGAACATGAGAGAGATTGTACAAAAAAATGTGAATGTTGACGATGCCTTTCACTATTTTTCGGGCAAGGAGAGAAAACTCTTTGCTGGCAGCACTCCTAAAGCCCCTGCAATTGAAAAATGGGATGACGGGTATCAGATTGCTCATAAAATAATAACTGAACTGATGGACTGCATTCGGCAAACTGGTGGTGCTGCTCAAGAAGGCGACCCAACTTTGGTGTCATCTGCTGTTTCTGCTATTGTTGGTAATGTAGGGCCAATTCTAGCAAAAGTTTCTGATTTCAGACCAGGGGGTTATCCATCTGCTGCTGATTCCCTAAACTTTGCTAGACGTATTCTACGCATTCATATAAGTTGCCTATCCCTTCTCAAGGAAGCTCTTGGAGAGCGTCAAACTCGTGTATTTGAGGTAGCTCTTGCCACAGAAGCTTGTTCTGCTCTTGCTGGGGTTTTTTCTCCTGGAAAGGGTTCTCGGAATCAATATCAGTTATCTCCTGAATCCCATGATTCCAATACAAAAGTTGCAGCTGCTGTTTCTGCTCTAATCATTGGGGCAGTTATTAATGGGATTTCTAGCTTGGAGAGGTTGGTGACTGTGTTCAGGTTTAAGGAAAAGTTGGATATAATTCAATTTGTGAGGAATAGTAGATCCAACTCAAATGGTAATGCTCGTTCTGCTGGGGCACTTAAGGGTGATAACTCACTTGAAGTTTATGTTCATTGGTTTAGATTGCTTGTTGGAAACTGCAGAACTGTTTCGGATGGAATGGTTGTGGAACTCTTGGGTGAACCATCCATAATAGCTCTTTCCAGGATGCAGCGAATGCTTCCTCTTCGTTTGGTTTTTCCACCTGCGTATTCAATATTTGCTTTTGTTATATGGCGGCCATTCCTTCTGAACACTTGCCTTGCAGTTCGTGAGGATTTTAATCAGTCATATCAATCTTTAGCAACAGCTATAGGTGATGTTATTAAGCATTTGCCTTTTCGCGATGTTTGTTTGAGAGATAGTCAGGGTTTCTATGACCTTGTAGCGGCAGATAGCAGCGATGCTGAATTTGCTGCCATGCTGGAGTTGAACGGTTCAGACATTCATTTAAAATCCATGGCTTTTGTTCCATTACGTGCAAGGCTTTTTCTGAATGCCATTCTTGACTGTAAGATGCCAAACTTTTTATTTACACAGGCGGAAGGAAATCAGGTATCTGGACAGGGCGAATCTAAAGTTCACTATTCAGAGCGTGAAACAAAGCTTGTAGATAAGCTTGTCCATATTTTAGATACCCTTCAACCTGCAAAATTTCATTGGCAATGGGTAGAACTCAGGCTCCTTTTGAATGAACAAGCCCTCATTGAAAAACTAGAGACACAGGACATGTCTTTAGTGGATGCCATACGTTCATCCTCACCTAGTCCAGAAAAGGCTGCTGCCTCTGAAAATGAGAAATATTTCATTGAAATCATCCTTACAAGATTATTGGTTAGACCTGATGCTGCACCCCTTTTCTCAGATGTGGTTCATCTCTTTGGGAGGTCTCTTGCAGATTCTATGTTGTTGCAGGTTAAATGGTTCCTGGGTGGTTCAGATGTTCTTTTTGGACGAAAAACCATTAGACAACGGCTTATGAATATTGCCGAGAGTAAAGGTCTCTCGACTAAGACCCACTTTTGGAAACCTTGGGGCTGGTTTACTTCTGAATCTGATCTTCTGACAAACAGGGGAGATAAGAAGAAGTTTGAAGTCACCTCCCTTGAAGAGGGTGAGATGGTTGAAGAGGGGACAGAGTCGAAAAGGCATGGGAAAGGGTCCAGTCAATTATTTGACAATGAAGGCCAGAGTGTCTCCCAGCAGCATGTGACAGAGAGGGCTCTCATTGAATTACTTCTTCCTTGCATAGATCAAAGTTCAGATGACTCACGAAATACTTTTGCAAATGATTTGATCAAGCAGTTGAGTAATATCGAGCAACAAATTAGTGCTGTGACTCGCGGGACAAGCAAGCAAGCAGGACAAACTCCTTCTGGAATTGAAGGTCCCACAAGCAAGGGAAATAATCGCAAAGGTATAAGGGGTGGCAGTCCTGGATTAGCTAGACGTGCAGCAGCAGCAGCAGCAGCAGATTCTGCTCCACCGTCCCCTGCAGCTTTGCGTGCTTCTATGTCATTGAGATTGCAGTTACTCTTGAGATTGCTTCCAATCTTCTATGCAGATAGAGAGCCATCAGCGCGGAACATGAGGCATGGGCTTGCCACCGTTATATTACGCCTTCTAGGAAACAGAGTTGTGCATGAGGATGCAGACCCATCCTTCACTCCCTCACAGAGTTCTTTATCCAAGAGGGAGTCAGATTCTTCAATGGATGCTGCCTCTGCTGCTTTTGCAGACTTGTCAAGCGAAAGTCTCTTTGATGAGTTATTGCTGGTTCTGCATGGGCTGTTAAGCAGTTGCCAGCCAAGTTGGTTGAGGTCTACTAAACCAACAAAAGAAAGTGGGAAAGGTTTTGTTGCATTTGATCGTGAACTGGCAGAGAATTTGCAGAATGACTTGGATCGCATGCAGCTACCTGACACTGTTAGGTGGCGTATTCAAACTGCAATGCCGGTAATAATTCCTTCAATTCGGTGCGTTGTGTCGTGCCAGCCACCACCAGTTCCAAACATGGCTTTGGCTGTTCTTCAGTCCAGCACATCAAATTCCGGGATCTACTCGGGAAACTCGAACCCACTGCAGAAAAATCAGGTTCCTCTGGCACGAACAGTAACGGGGAAGTTGAAGCCATTGCCATCCCAGGATTATGATATGGAGATTGACCCATGGACACTCCTGGAAGATGGTGCAGGATCAGGCCCGAGCTCAGGCAACAGTGCTTTAATAGGCAGTGCAGATCATGGAAATCTTCGAGCATCTAGCTGGCTTAAGGGGGCTGTAAGAGTAAGACGGAAGGATCTCACATACATTGGTGCTGTGGACGATGACAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

2231

Amino Acids

246.97

Weight (kDa)

8.85

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med12 PF09497 139 - 199 4.8e-20 Transcription mediator complex subunit Med12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1544
AarI CACCTGC 1 cut(s) 4573
Acc16I TGCGCA 3 cut(s) 1052, 1485, 2807
Acc36I ACCTGC 3 cut(s) 4573, 5014, 5263
AccB1I GGYRCC 2 cut(s) 2256, 2597
AccB7I CCANNNNNTGG 1 cut(s) 3150
AccBSI CCGCTC 2 cut(s) 86, 1685
AccI GTMKAC 2 cut(s) 1136, 6182
AccII CGCG 5 cut(s) 1086, 3629, 4704, 5703, 5941
AclI AACGTT 1 cut(s) 1816
AcoI YGGCCR 3 cut(s) 620, 3100, 4598
AcuI CTGAAG 7 cut(s) 274, 930, 2229, 2339, 2673, 3423, 6374
AcyI GRCGYC 1 cut(s) 2257
AdeI CACNNNGTG 1 cut(s) 1229
AfaI GTAC 7 cut(s) 716, 1185, 1461, 1606, 1734, 1909, 3732
AflII CTTAAG 2 cut(s) 4400, 6629
AflIII ACRYGT 2 cut(s) 3563, 5088
AjiI CACGTC 1 cut(s) 5810
AloI GAACNNNNNNTCC 4 cut(s) 1672, 1704, 5025, 5057
Alw21I GWGCWC 6 cut(s) 346, 684, 1899, 2660, 3143, 6569
Alw44I GTGCAC 1 cut(s) 1895
AlwNI CAGNNNCTG 4 cut(s) 1145, 2117, 4244, 5837
Ama87I CYCGRG 5 cut(s) 977, 1936, 3702, 6421, 6562
ApaI GGGCCC 1 cut(s) 1943
ApaLI GTGCAC 1 cut(s) 1895
AseI ATTAAT 2 cut(s) 1833, 4275
Asp700I GAANNNNTTC 9 cut(s) 73, 745, 945, 3466, 3551, 4180, 4468, 5162, 5595
AspLEI GCGC 7 cut(s) 1053, 1486, 2010, 2259, 2808, 3631, 5941
AsuC2I CCSGG 3 cut(s) 1937, 1938, 6412
AsuII TTCGAA 1 cut(s) 1678
AvaI CYCGRG 5 cut(s) 977, 1936, 3702, 6421, 6562
AvaII GGWCC 4 cut(s) 687, 2108, 5520, 5747
BaeGI GKGCMC 3 cut(s) 1899, 1943, 4399
BalI TGGCCA 1 cut(s) 3102
BanI GGYRCC 2 cut(s) 2256, 2597
BanII GRGCYC 7 cut(s) 684, 1937, 1943, 2660, 3143, 5584, 6569
BarI GAAGNNNNNNTAC 4 cut(s) 1120, 1152, 3216, 3248
BauI CACGAG 2 cut(s) 339, 4110
BbsI GAAGAC 2 cut(s) 280, 2390
Bbv12I GWGCWC 6 cut(s) 346, 684, 1899, 2660, 3143, 6569
BceAI ACGGC 3 cut(s) 2270, 2725, 5348
BcgI CGANNNNNNTGC 4 cut(s) 1042, 1076, 6421, 6455
BciVI GTATCC 2 cut(s) 200, 642
BclI TGATCA 6 cut(s) 505, 1369, 1972, 2284, 2374, 5655
BcnI CCSGG 3 cut(s) 1937, 1938, 6412
BfmI CTRYAG 6 cut(s) 959, 2943, 4459, 4671, 5853, 6440
BfoI RGCGCY 2 cut(s) 2011, 2260
BfrI CTTAAG 2 cut(s) 4400, 6629
BfuAI ACCTGC 3 cut(s) 4573, 5014, 5263
BfuI GTATCC 2 cut(s) 200, 642
BglII AGATCT 4 cut(s) 533, 2148, 2912, 3397
Bme18I GGWCC 4 cut(s) 687, 2108, 5520, 5747
BmeT110I CYCGRG 5 cut(s) 977, 1936, 3702, 6421, 6562
BmgBI CACGTC 1 cut(s) 5810
BmrI ACTGGG 1 cut(s) 3261
BmuI ACTGGG 1 cut(s) 3261
BoxI GACNNNNGTC 2 cut(s) 1028, 1070
BpiI GAAGAC 2 cut(s) 280, 2390
BpmI CTGGAG 3 cut(s) 1108, 2991, 4805
Bpu10I CCTNAGC 2 cut(s) 3093, 6568
Bpu14I TTCGAA 1 cut(s) 1678
BpuEI CTTGAG 5 cut(s) 1080, 1600, 3894, 4067, 5917
BpuMI CCSGG 3 cut(s) 1937, 1938, 6412
Bsa29I ATCGAT 1 cut(s) 775
BsaAI YACGTR 1 cut(s) 4838
BsaBI GATNNNNATC 2 cut(s) 147, 4641
BsaHI GRCGYC 1 cut(s) 2257
BsaI GGTCTC 4 cut(s) 1482, 2716, 5253, 5366
BsaWI WCCGGW 1 cut(s) 3693
BsaXI ACNNNNNCTCC 6 cut(s) 1672, 1702, 2964, 2994, 5025, 5055
Bse118I RCCGGY 2 cut(s) 20, 6313
Bse3DI GCAATG 7 cut(s) 569, 902, 1737, 3526, 5030, 6315, 6491
Bse8I GATNNNNATC 2 cut(s) 147, 4641
BseCI ATCGAT 1 cut(s) 775
BseJI GATNNNNATC 2 cut(s) 147, 4641
BseMI GCAATG 7 cut(s) 569, 902, 1737, 3526, 5030, 6315, 6491
BseMII CTCAG 8 cut(s) 566, 677, 1266, 1742, 2748, 5050, 5235, 6582
BseRI GAGGAG 3 cut(s) 188, 248, 1677
BseSI GKGCMC 3 cut(s) 1899, 1943, 4399
BseYI CCCAGC 4 cut(s) 797, 4157, 4391, 5559
BsgI GTGCAG 6 cut(s) 1007, 3165, 5193, 5832, 6570, 6615
Bsh1236I CGCG 5 cut(s) 1086, 3629, 4704, 5703, 5941
Bsh1285I CGRYCG 1 cut(s) 779
BshNI GGYRCC 2 cut(s) 2256, 2597
BshVI ATCGAT 1 cut(s) 775
BsiEI CGRYCG 1 cut(s) 779
BsiHKAI GWGCWC 6 cut(s) 346, 684, 1899, 2660, 3143, 6569
BsiHKCI CYCGRG 5 cut(s) 977, 1936, 3702, 6421, 6562
BsiSI CCGG 6 cut(s) 21, 619, 1937, 3694, 6314, 6411
BslFI GGGAC 7 cut(s) 1078, 2521, 3346, 5506, 5719, 5733, 5833
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 7 cut(s) 1078, 2521, 3346, 5506, 5719, 5733, 5833
BsmI GAATGC 5 cut(s) 2621, 3885, 4056, 4542, 4861
Bso31I GGTCTC 4 cut(s) 1482, 2716, 5253, 5366
BsoBI CYCGRG 5 cut(s) 977, 1936, 3702, 6421, 6562
Bsp119I TTCGAA 1 cut(s) 1678
Bsp120I GGGCCC 1 cut(s) 1939
Bsp1407I TGTACA 2 cut(s) 1459, 3730
Bsp19I CCATGG 3 cut(s) 1854, 4818, 6527
Bsp68I TCGCGA 1 cut(s) 4704
BspCNI CTCAG 8 cut(s) 567, 676, 1267, 1741, 2747, 5049, 5234, 6581
BspDI ATCGAT 1 cut(s) 775
BspFNI CGCG 5 cut(s) 1086, 3629, 4704, 5703, 5941
BspMAI CTGCAG 4 cut(s) 963, 4463, 5857, 6444
BspMI ACCTGC 3 cut(s) 4573, 5014, 5263
BspQI GCTCTTC 1 cut(s) 2617
BspT104I TTCGAA 1 cut(s) 1678
BspT107I GGYRCC 2 cut(s) 2256, 2597
BspTI CTTAAG 2 cut(s) 4400, 6629
BspTNI GGTCTC 4 cut(s) 1482, 2716, 5253, 5366
BsrBI CCGCTC 2 cut(s) 86, 1685
BsrDI GCAATG 7 cut(s) 569, 902, 1737, 3526, 5030, 6315, 6491
BsrFI RCCGGY 2 cut(s) 20, 6313
BsrGI TGTACA 2 cut(s) 1459, 3730
BssAI RCCGGY 2 cut(s) 20, 6313
BssNAI GTATAC 1 cut(s) 1137
BssNI GRCGYC 1 cut(s) 2257
BssSI CACGAG 2 cut(s) 339, 4110
BssT1I CCWWGG 8 cut(s) 1359, 1854, 2278, 2539, 2668, 4818, 5390, 6527
Bst1107I GTATAC 1 cut(s) 1137
Bst2BI CACGAG 2 cut(s) 339, 4110
BstACI GRCGYC 1 cut(s) 2257
BstAFI CTTAAG 2 cut(s) 4400, 6629
BstAPI GCANNNNNTGC 5 cut(s) 787, 1313, 2204, 4537, 5837
BstAUI TGTACA 2 cut(s) 1459, 3730
BstBAI YACGTR 1 cut(s) 4838
BstBI TTCGAA 1 cut(s) 1678
BstDSI CCRYGG 3 cut(s) 1854, 4818, 6527
BstENI CCTNNNNNAGG 3 cut(s) 1095, 4082, 5468
BstFNI CGCG 5 cut(s) 1086, 3629, 4704, 5703, 5941
BstH2I RGCGCY 2 cut(s) 2011, 2260
BstHHI GCGC 7 cut(s) 1053, 1486, 2010, 2259, 2808, 3631, 5941
BstMCI CGRYCG 1 cut(s) 779
BstNSI RCATGY 4 cut(s) 3567, 5092, 5570, 6271
BstPAI GACNNNNGTC 2 cut(s) 1028, 1070
BstSFI CTRYAG 6 cut(s) 959, 2943, 4459, 4671, 5853, 6440
BstSLI GKGCMC 3 cut(s) 1899, 1943, 4399
BstUI CGCG 5 cut(s) 1086, 3629, 4704, 5703, 5941
BstV2I GAAGAC 2 cut(s) 280, 2390
BstZ17I GTATAC 1 cut(s) 1137
Bsu15I ATCGAT 1 cut(s) 775
BsuI GTATCC 2 cut(s) 200, 642
BsuTUI ATCGAT 1 cut(s) 775
BtgI CCRYGG 3 cut(s) 1854, 4818, 6527
BtgZI GCGATG 3 cut(s) 1548, 4719, 4776
BtrI CACGTC 1 cut(s) 5810
BtsI GCAGTG 4 cut(s) 98, 3450, 6437, 6598
BtuMI TCGCGA 1 cut(s) 4704
BveI ACCTGC 3 cut(s) 4573, 5014, 5263
CaiI CAGNNNCTG 4 cut(s) 1145, 2117, 4244, 5837
CfoI GCGC 7 cut(s) 1053, 1486, 2010, 2259, 2808, 3631, 5941
Cfr10I RCCGGY 2 cut(s) 20, 6313
Cfr9I CCCGGG 1 cut(s) 1936
ClaI ATCGAT 1 cut(s) 775
CseI GACGC 2 cut(s) 187, 4091
Csp6I GTAC 7 cut(s) 715, 1184, 1460, 1605, 1733, 1908, 3731
CviQI GTAC 7 cut(s) 715, 1184, 1460, 1605, 1733, 1908, 3731
DinI GGCGCC 1 cut(s) 2258
DraI TTTAAA 3 cut(s) 120, 3000, 4812
DraIII CACNNNGTG 1 cut(s) 1229
EaeI YGGCCR 3 cut(s) 620, 3100, 4598
EciI GGCGGA 1 cut(s) 4916
Ecl136II GAGCTC 4 cut(s) 682, 2658, 3141, 6567
Eco130I CCWWGG 8 cut(s) 1359, 1854, 2278, 2539, 2668, 4818, 5390, 6527
Eco147I AGGCCT 1 cut(s) 2557
Eco24I GRGCYC 7 cut(s) 684, 1937, 1943, 2660, 3143, 5584, 6569
Eco31I GGTCTC 4 cut(s) 1482, 2716, 5253, 5366
Eco32I GATATC 2 cut(s) 249, 697
Eco47I GGWCC 4 cut(s) 687, 2108, 5520, 5747
Eco53kI GAGCTC 4 cut(s) 682, 2658, 3141, 6567
Eco57I CTGAAG 7 cut(s) 274, 930, 2229, 2339, 2673, 3423, 6374
Eco88I CYCGRG 5 cut(s) 977, 1936, 3702, 6421, 6562
EcoICRI GAGCTC 4 cut(s) 682, 2658, 3141, 6567
EcoNI CCTNNNNNAGG 3 cut(s) 1095, 4082, 5468
EcoO109I RGGNCCY 4 cut(s) 429, 1465, 1940, 5747
EcoRI GAATTC 1 cut(s) 728
EcoRV GATATC 2 cut(s) 249, 697
EcoT14I CCWWGG 8 cut(s) 1359, 1854, 2278, 2539, 2668, 4818, 5390, 6527
EcoT38I GRGCYC 7 cut(s) 684, 1937, 1943, 2660, 3143, 5584, 6569
EgeI GGCGCC 1 cut(s) 2258
EheI GGCGCC 1 cut(s) 2258
ErhI CCWWGG 8 cut(s) 1359, 1854, 2278, 2539, 2668, 4818, 5390, 6527
Esp3I CGTCTC 1 cut(s) 170
FalI AAGNNNNNCTT 6 cut(s) 903, 935, 1321, 1353, 5363, 5395
FaqI GGGAC 7 cut(s) 1078, 2521, 3346, 5506, 5719, 5733, 5833
FauI CCCGC 1 cut(s) 5696
FbaI TGATCA 6 cut(s) 505, 1369, 1972, 2284, 2374, 5655
FblI GTMKAC 2 cut(s) 1136, 6182
FriOI GRGCYC 7 cut(s) 684, 1937, 1943, 2660, 3143, 5584, 6569
FspI TGCGCA 3 cut(s) 1052, 1485, 2807
GlaI GCGC 7 cut(s) 1052, 1485, 2009, 2258, 2807, 3630, 5940
GsaI CCCAGC 4 cut(s) 801, 4161, 4395, 5563
GsuI CTGGAG 3 cut(s) 1108, 2991, 4805
HaeII RGCGCY 2 cut(s) 2011, 2260
HapII CCGG 6 cut(s) 21, 619, 1937, 3694, 6314, 6411
HgaI GACGC 2 cut(s) 187, 4091
HhaI GCGC 7 cut(s) 1053, 1486, 2010, 2259, 2808, 3631, 5941
Hin1I GRCGYC 1 cut(s) 2257
Hin6I GCGC 7 cut(s) 1051, 1484, 2008, 2257, 2806, 3629, 5939
HinP1I GCGC 7 cut(s) 1051, 1484, 2008, 2257, 2806, 3629, 5939
HincII GTYRAC 2 cut(s) 956, 3751
HindII GTYRAC 2 cut(s) 956, 3751
HindIII AAGCTT 4 cut(s) 2994, 4140, 4964, 4976
HpaII CCGG 6 cut(s) 21, 619, 1937, 3694, 6314, 6411
HpyCH4IV ACGT 8 cut(s) 316, 952, 1816, 2038, 4045, 4837, 5110, 5809
HpySE526I ACGT 8 cut(s) 316, 952, 1816, 2038, 4045, 4837, 5110, 5809
Hsp92I GRCGYC 1 cut(s) 2257
HspAI GCGC 7 cut(s) 1051, 1484, 2008, 2257, 2806, 3629, 5939
KasI GGCGCC 1 cut(s) 2256
Ksp22I TGATCA 6 cut(s) 505, 1369, 1972, 2284, 2374, 5655
LguI GCTCTTC 1 cut(s) 2617
MaeII ACGT 8 cut(s) 316, 952, 1816, 2038, 4045, 4837, 5110, 5809
MbiI CCGCTC 2 cut(s) 86, 1685
MfeI CAATTG 2 cut(s) 3087, 3822
MlsI TGGCCA 1 cut(s) 3102
MluNI TGGCCA 1 cut(s) 3102
Mly113I GGCGCC 1 cut(s) 2257
MlyI GAGTC 6 cut(s) 1184, 2543, 5507, 5621, 5692, 6065
MmeI TCCRAC 4 cut(s) 1946, 4311, 4389, 4432
Mox20I TGGCCA 1 cut(s) 3102
MroXI GAANNNNTTC 9 cut(s) 73, 745, 945, 3466, 3551, 4180, 4468, 5162, 5595
MscI TGGCCA 1 cut(s) 3102
MslI CAYNNNNRTG 4 cut(s) 1594, 1797, 2064, 6006
Msp20I TGGCCA 1 cut(s) 3102
MspA1I CMGCKG 6 cut(s) 1070, 2077, 2201, 2837, 4241, 6693
MspCI CTTAAG 2 cut(s) 4400, 6629
MspI CCGG 6 cut(s) 21, 619, 1937, 3694, 6314, 6411
MunI CAATTG 2 cut(s) 3087, 3822
Mva1269I GAATGC 5 cut(s) 2621, 3885, 4056, 4542, 4861
MvnI CGCG 5 cut(s) 1086, 3629, 4704, 5703, 5941
NarI GGCGCC 1 cut(s) 2257
NciI CCSGG 3 cut(s) 1937, 1938, 6412
NcoI CCATGG 3 cut(s) 1854, 4818, 6527
NmeAIII GCCGAG 2 cut(s) 1726, 5374
NmuCI GTSAC 8 cut(s) 437, 598, 2113, 2645, 4303, 5455, 5569, 5695
NruI TCGCGA 1 cut(s) 4704
NsbI TGCGCA 3 cut(s) 1052, 1485, 2807
NspI RCATGY 4 cut(s) 3567, 5092, 5570, 6271
NspV TTCGAA 1 cut(s) 1678
PaeI GCATGC 1 cut(s) 6271
PaeR7I CTCGAG 1 cut(s) 977
PaqCI CACCTGC 1 cut(s) 4573
PasI CCCWGGG 1 cut(s) 2603
PceI AGGCCT 1 cut(s) 2557
PciI ACATGT 2 cut(s) 3563, 5088
PciSI GCTCTTC 1 cut(s) 2617
PcsI WCGNNNNNNNCGW 1 cut(s) 6428
PctI GAATGC 5 cut(s) 2621, 3885, 4056, 4542, 4861
PdmI GAANNNNTTC 9 cut(s) 73, 745, 945, 3466, 3551, 4180, 4468, 5162, 5595
PflFI GACNNNGTC 1 cut(s) 5497
PflMI CCANNNNNTGG 1 cut(s) 3150
PfoI TCCNGGA 5 cut(s) 4171, 4523, 5794, 6410, 6537
Ple19I CGATCG 1 cut(s) 779
PleI GAGTC 6 cut(s) 1184, 2542, 5506, 5621, 5692, 6064
PluTI GGCGCC 1 cut(s) 2260
PpsI GAGTC 6 cut(s) 1184, 2542, 5506, 5621, 5692, 6064
Ppu21I YACGTR 1 cut(s) 4838
PpuMI RGGWCCY 1 cut(s) 5747
PscI ACATGT 2 cut(s) 3563, 5088
PshAI GACNNNNGTC 2 cut(s) 1028, 1070
PshBI ATTAAT 2 cut(s) 1833, 4275
PsiI TTATAA 1 cut(s) 1544
Psp124BI GAGCTC 4 cut(s) 684, 2660, 3143, 6569
Psp1406I AACGTT 1 cut(s) 1816
Psp5II RGGWCCY 1 cut(s) 5747
PspFI CCCAGC 4 cut(s) 797, 4157, 4391, 5559
PspOMI GGGCCC 1 cut(s) 1939
PspPPI RGGWCCY 1 cut(s) 5747
PsrI GAACNNNNNNTAC 4 cut(s) 360, 392, 4369, 4401
PstI CTGCAG 4 cut(s) 963, 4463, 5857, 6444
PstNI CAGNNNCTG 4 cut(s) 1145, 2117, 4244, 5837
PsyI GACNNNGTC 1 cut(s) 5497
PvuI CGATCG 1 cut(s) 779
PvuII CAGCTG 5 cut(s) 1070, 2077, 2837, 4241, 6693
RruI TCGCGA 1 cut(s) 4704
RsaI GTAC 7 cut(s) 716, 1185, 1461, 1606, 1734, 1909, 3732
RsaNI GTAC 7 cut(s) 715, 1184, 1460, 1605, 1733, 1908, 3731
RseI CAYNNNNRTG 4 cut(s) 1594, 1797, 2064, 6006
SacI GAGCTC 4 cut(s) 684, 2660, 3143, 6569
SapI GCTCTTC 1 cut(s) 2617
SchI GAGTC 6 cut(s) 1184, 2543, 5507, 5621, 5692, 6065
SfcI CTRYAG 6 cut(s) 959, 2943, 4459, 4671, 5853, 6440
SfoI GGCGCC 1 cut(s) 2258
Sfr274I CTCGAG 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 1678
SinI GGWCC 4 cut(s) 687, 2108, 5520, 5747
SlaI CTCGAG 1 cut(s) 977
SmaI CCCGGG 1 cut(s) 1938
SmiMI CAYNNNNRTG 4 cut(s) 1594, 1797, 2064, 6006
SmlI CTYRAG 8 cut(s) 977, 1095, 1579, 3909, 4082, 4400, 5896, 6629
SmoI CTYRAG 8 cut(s) 977, 1095, 1579, 3909, 4082, 4400, 5896, 6629
SphI GCATGC 1 cut(s) 6271
SrfI GCCCGGGC 1 cut(s) 1938
SseBI AGGCCT 1 cut(s) 2557
SspDI GGCGCC 1 cut(s) 2256
SspI AATATT 4 cut(s) 1837, 4578, 5162, 5344
SstI GAGCTC 4 cut(s) 684, 2660, 3143, 6569
StuI AGGCCT 1 cut(s) 2557
StyI CCWWGG 8 cut(s) 1359, 1854, 2278, 2539, 2668, 4818, 5390, 6527
TaiI ACGT 8 cut(s) 319, 955, 1819, 2041, 4048, 4840, 5113, 5812
TaqI TCGA 9 cut(s) 723, 775, 978, 1678, 5366, 5501, 5676, 6431, 6613
TatI WGTACW 3 cut(s) 1459, 1907, 3730
TauI GCSGC 4 cut(s) 889, 3007, 4600, 4751
TseFI GTSAC 8 cut(s) 437, 598, 2113, 2645, 4303, 5455, 5569, 5695
Tsp45I GTSAC 8 cut(s) 437, 598, 2113, 2645, 4303, 5455, 5569, 5695
TspGWI ACGGA 4 cut(s) 829, 1064, 3422, 6667
TspMI CCCGGG 1 cut(s) 1936
Tth111I GACNNNGTC 1 cut(s) 5497
Van91I CCANNNNNTGG 1 cut(s) 3150
Vha464I CTTAAG 2 cut(s) 4400, 6629
VneI GTGCAC 1 cut(s) 1895
VpaK11BI GGWCC 4 cut(s) 687, 2108, 5520, 5747
VspI ATTAAT 2 cut(s) 1833, 4275
XagI CCTNNNNNAGG 3 cut(s) 1095, 4082, 5468
XbaI TCTAGA 1 cut(s) 125
XceI RCATGY 4 cut(s) 3567, 5092, 5570, 6271
XcmI CCANNNNNNNNNTGG 1 cut(s) 3683
XhoI CTCGAG 1 cut(s) 977
XmaI CCCGGG 1 cut(s) 1936
XmiI GTMKAC 2 cut(s) 1136, 6182
XmnI GAANNNNTTC 9 cut(s) 73, 745, 945, 3466, 3551, 4180, 4468, 5162, 5595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.