Rh1CG276400

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004169
Physical Location & Seq
Forward (+)
54480104 .. 54484782
4679 bp
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UTR
Exon/CDS
Intron
Rh1CG276400.1

Sequence Viewer

Length: 681 bp
ATGTTGTTGTGGTGTTACTTTATGGTAGTCTTTAGAGACCCTGGTTCTGTTCCGGAAAATTGGAAACCTCGTACACAGGAGGAAATTTTGGAGGCTGGTAGTTCTCTAACTTCGACGGAAATCACAGCACCCGAGGTTTTCAACTCCACGCAGTTTACAGATGGACAAGAAAGAAGACCAGAAGTAGGCTATTGTAGTCGGTGCCAAAATGCCAAGCCACCACGATGCCATCATTGCTCTGTGTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGCGTTGGTGCCACCAACTACAAGTCTTTTCTGCTTTTCTTGCTTTATACATTTTTGGAGACGACAATGGACACCTTAGTTTTGCTGCCGAATTTCATCAATTTTTTTTCTGAAGCCAAGAGTCATTCCACATCTCCTGGCAATCTAGCAGTTGTTTTTGTGACTTTTGTGCTTAATTTGGCCTTCTCATTGAGTCTTCTCTGTTTCGTGGTTATGCACATATCCCTTTTGTCAAGCAATACCACTTCAGTAGAGGTTCATGAGAAGAGAAGAGCAACCAGATGGAAGTATGATTTAGGCAGGAAGAAAAACTTTGAGCAGGTTATATATATAGGACTCTCACTGTCTCTATCTCTATCTCTATCTCTATCTGAATTTGTCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

226

Amino Acids

25.74

Weight (kDa)

7.56

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 64 - 186 4.8e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 604
AccB1I GGYRCC 2 cut(s) 201, 302
AccIII TCCGGA 1 cut(s) 52
AclWI GGATC 1 cut(s) 276
AcsI RAATTY 3 cut(s) 84, 385, 668
AcuI CTGAAG 2 cut(s) 426, 525
AfaI GTAC 2 cut(s) 73, 258
AfiI CCNNNNNNNGG 1 cut(s) 185
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 2 cut(s) 40, 430
AleI CACNNNNGTG 1 cut(s) 276
Alw26I GTCTC 3 cut(s) 30, 347, 645
AlwI GGATC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 3 cut(s) 84, 385, 668
AsuHPI GGTGA 2 cut(s) 263, 301
AvaI CYCGRG 1 cut(s) 131
BanI GGYRCC 2 cut(s) 201, 302
BbsI GAAGAC 2 cut(s) 181, 482
BbvI GCAGC 1 cut(s) 366
BccI CCATC 4 cut(s) 155, 237, 259, 570
BciT130I CCWGG 2 cut(s) 42, 432
BcoDI GTCTC 3 cut(s) 30, 347, 645
BfaI CTAG 1 cut(s) 440
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 604
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 42, 432
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 203, 304
BmrFI CCNGG 2 cut(s) 42, 432
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 2 cut(s) 181, 482
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 40, 132
BsaWI WCCGGW 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 2 cut(s) 42, 432
BseDI CCNNGG 2 cut(s) 40, 132
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 366
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 2 cut(s) 201, 302
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 3 cut(s) 30, 347, 645
BsmBI CGTCTC 1 cut(s) 347
BsnI GGCC 1 cut(s) 476
Bso31I GGTCTC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 476
BspEI TCCGGA 1 cut(s) 52
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 203, 304
BspMI ACCTGC 1 cut(s) 604
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 559
BspT107I GGYRCC 2 cut(s) 201, 302
BspTI CTTAAG 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 40, 132
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 42, 432
Bst4CI ACNGT 1 cut(s) 639
Bst6I CTCTTC 2 cut(s) 554, 559
BstAFI CTTAAG 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 370
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 3 cut(s) 30, 347, 645
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 234, 334
BstNI CCWGG 2 cut(s) 42, 432
BstSCI CCNGG 2 cut(s) 40, 430
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 2 cut(s) 181, 482
BsuRI GGCC 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 635
BveI ACCTGC 1 cut(s) 604
CciI TCATGA 1 cut(s) 553
Csp6I GTAC 2 cut(s) 72, 257
CviAII CATG 1 cut(s) 554
CviJI RGCY 5 cut(s) 95, 189, 217, 410, 476
CviKI_1 RGCY 5 cut(s) 95, 189, 217, 410, 476
CviQI GTAC 2 cut(s) 72, 257
DdeI CTNAG 1 cut(s) 370
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 554, 559
EarI CTCTTC 2 cut(s) 554, 559
Eco31I GGTCTC 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 426, 525
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 40, 430
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 1 cut(s) 557
FalI AAGNNNNNCTT 2 cut(s) 590, 622
FatI CATG 1 cut(s) 553
Fnu4HI GCNGC 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 440
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 53
Hin1II CATG 1 cut(s) 557
HinfI GANTC 3 cut(s) 415, 487, 630
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 263, 301
Hpy166II GTNNAC 3 cut(s) 74, 156, 257
Hpy188I TCNGA 2 cut(s) 406, 667
Hpy188III TCNNGA 3 cut(s) 53, 554, 678
Hpy8I GTNNAC 3 cut(s) 74, 156, 257
Hpy99I CGWCG 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 1 cut(s) 639
HpyCH4V TGCA 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 334
HpyF3I CTNAG 1 cut(s) 370
Hsp92II CATG 1 cut(s) 557
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 559
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 440
MaeIII GTNAC 2 cut(s) 14, 454
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 5 cut(s) 186, 482, 571, 576, 610
MluCI AATT 7 cut(s) 58, 84, 292, 385, 394, 469, 668
MlyI GAGTC 3 cut(s) 424, 496, 624
MnlI CCTC 5 cut(s) 73, 78, 85, 127, 541
MroI TCCGGA 1 cut(s) 52
MseI TTAA 2 cut(s) 261, 468
MslI CAYNNNNRTG 2 cut(s) 223, 276
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 42, 432
MvaI CCWGG 2 cut(s) 42, 432
MwoI GCNNNNNNNGC 2 cut(s) 234, 334
NdeII GATC 1 cut(s) 268
NlaIII CATG 1 cut(s) 557
NlaIV GGNNCC 2 cut(s) 203, 304
NmuCI GTSAC 1 cut(s) 454
OliI CACNNNNGTG 1 cut(s) 276
PagI TCATGA 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 559
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 3 cut(s) 423, 495, 624
PpsI GAGTC 3 cut(s) 423, 495, 624
Psp6I CCWGG 2 cut(s) 40, 430
PspGI CCWGG 2 cut(s) 40, 430
PspN4I GGNNCC 2 cut(s) 203, 304
RsaI GTAC 2 cut(s) 73, 258
RsaNI GTAC 2 cut(s) 72, 257
RseI CAYNNNNRTG 2 cut(s) 223, 276
SapI GCTCTTC 1 cut(s) 559
SaqAI TTAA 2 cut(s) 261, 468
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 3 cut(s) 424, 496, 624
ScrFI CCNGG 2 cut(s) 42, 432
SetI ASST 5 cut(s) 70, 138, 371, 552, 618
SfaNI GCATC 1 cut(s) 215
SmiMI CAYNNNNRTG 2 cut(s) 223, 276
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 7 cut(s) 58, 84, 292, 385, 394, 469, 668
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 2 cut(s) 40, 430
TaaI ACNGT 1 cut(s) 639
TaqI TCGA 1 cut(s) 113
TasI AATT 7 cut(s) 58, 84, 292, 385, 394, 469, 668
TatI WGTACW 1 cut(s) 256
Tru1I TTAA 2 cut(s) 261, 468
Tru9I TTAA 2 cut(s) 261, 468
TscAI CASTG 1 cut(s) 642
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 379, 542
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 642
Vha464I CTTAAG 1 cut(s) 260
XapI RAATTY 3 cut(s) 84, 385, 668
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.