Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004169

Physical Location & Seq

Genomic Coordinates Forward (+)

17692067 .. 17693373

Gene Structure 1307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATCACCATTATGTTTGGGTGGTGAATTGTGTTGGTGCATGCAACTACAAGTTTTTTCTTCTTTTCTTGCTTTATACATTTCTGGAAACGACGATGGATACCTTAGTTTTGCTGCCAAATTTTATCGGTTTTTTCTCTGAAGCGATCGATCATTCCGAATCTCCTGGCCATCTTGCAGTCGTTTTTTTGGCTTTTGGTAATATTCCACCGAGTAAATCATTGGTTCTGCTTTCATTGTTTACTTGTTTCTTACAGATTGTTTACCATGTTGCAGTGCTTAATTTAGCCTTTGCACTGAGTCTTCTTTGTTTTGTGGTTATGCATGCGTCCCTTCTGTCTAGCAACACCCCTACAGTTGAGGTTCATGAAAAGAGAGGAGCAATCAGATGGAAGTATGACTTGGGCAGGAAGAAGAATTTTGAGCAGGTTTTCGGCACGAACAAGGCACTGTGGCTGTTACCACTGTTCTCAAAAGAGGATTTAGACAACGTACCTGCTCTTCGGGGACTGGAATTTCCAACACTTTTAGATACTGATGCTCGATGCTTGATGCTTGGTGAACTCCCATACTTTTACCTCCCACCAGCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

199

Amino Acids

22.44

Weight (kDa)

5.93

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00840 AT4G00840
fragaria_vesca	FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410
malus_domestica	MD01G1087100.v1.1 MD07G1157300.v1.1
prunus_persica	Prupe.2G195700_v2.0.a1 Prupe.2G195700_v2.0.a1 Prupe.2G195700_v2.0.a1
pyrus_communis	pycom01g11100 pycom07g15370 pycom07g15390
rosa_chinensis	RchiOBHm_Chr1g0360851
rosa_laevigata	RLG00000027781
rosa_multiflora	Rmu_co8452039.1_g000001 Rmu_ssc0000022.1_g000048
rosa_roxburghii	Rroxscaffold_4G00295760
rosa_rugosa	Rorug01G0282300 Rorug01G0282300 Rorug01G0282300 Rorug01G0282300 Rorug01G0282300
rosa_samantha	Rh1AG294000 Rh1BG258800 Rh1CG276400 Rh1DG289000
rosa_wichuraiana	Rw1G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	418, 505
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	3 cut(s)	121, 418, 515
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	3 cut(s)	121, 418, 515
AsuHPI	GGTGA	2 cut(s)	37, 572
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BalI	TGGCCA	1 cut(s)	171
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	3 cut(s)	91, 180, 384
BceAI	ACGGC	1 cut(s)	575
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	2 cut(s)	418, 505
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	529, 536, 543
BpiI	GAAGAC	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	102
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	316, 522
BsmFI	GGGAC	2 cut(s)	316, 522
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	4, 147, 151
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	291
BspDI	ATCGAT	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	367
BspMI	ACCTGC	2 cut(s)	418, 505
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	4, 147, 151
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	358, 453, 468
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	43, 327
BstDEI	CTNAG	2 cut(s)	106, 299
BstKTI	GATC	3 cut(s)	7, 150, 154
BstMBI	GATC	3 cut(s)	4, 147, 151
BstMCI	CGRYCG	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	168
BstNSI	RCATGY	2 cut(s)	45, 329
BstSCI	CCNGG	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	171
BsuTUI	ATCGAT	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	4 cut(s)	282, 296, 449, 464
BveI	ACCTGC	2 cut(s)	418, 505
Cac8I	GCNNGC	2 cut(s)	43, 327
CciI	TCATGA	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	4 cut(s)	42, 269, 326, 368
CviJI	RGCY	5 cut(s)	171, 194, 290, 457, 590
CviKI_1	RGCY	5 cut(s)	171, 194, 290, 457, 590
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	2 cut(s)	106, 299
DpnI	GATC	3 cut(s)	6, 149, 153
DpnII	GATC	3 cut(s)	4, 147, 151
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	166
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	4 cut(s)	45, 272, 329, 371
FaiI	YATR	9 cut(s)	15, 43, 78, 270, 323, 327, 369, 399, 571
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	2 cut(s)	316, 522
FatI	CATG	4 cut(s)	41, 268, 325, 367
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	171
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	45, 272, 329, 371
HinfI	GANTC	2 cut(s)	161, 301
HphI	GGTGA	2 cut(s)	37, 572
Hpy166II	GTNNAC	3 cut(s)	243, 265, 563
Hpy188I	TCNGA	3 cut(s)	142, 160, 389
Hpy188III	TCNNGA	2 cut(s)	86, 368
Hpy8I	GTNNAC	3 cut(s)	243, 265, 563
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	3 cut(s)	358, 453, 468
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	6 cut(s)	41, 45, 179, 275, 296, 325
HpyF3I	CTNAG	2 cut(s)	106, 299
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	4 cut(s)	45, 272, 329, 371
Kzo9I	GATC	3 cut(s)	4, 147, 151
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	380
LpnPI	CCDG	7 cut(s)	71, 153, 180, 394, 413, 497, 510
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	3 cut(s)	529, 536, 543
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	3 cut(s)	6, 149, 153
MboI	GATC	3 cut(s)	4, 147, 151
MboII	GAAGA	5 cut(s)	53, 296, 424, 427, 494
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	5 cut(s)	28, 121, 283, 418, 515
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	545
MnlI	CCTC	4 cut(s)	355, 371, 472, 590
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	2 cut(s)	282, 595
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
NdeII	GATC	3 cut(s)	4, 147, 151
NlaIII	CATG	4 cut(s)	45, 272, 329, 371
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	2 cut(s)	45, 329
PaeI	GCATGC	2 cut(s)	45, 329
PagI	TCATGA	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	507
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	117
Ple19I	CGATCG	1 cut(s)	150
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	150
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	282, 595
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	4, 147, 151
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	6 cut(s)	107, 366, 432, 495, 499, 582
SfaNI	GCATC	3 cut(s)	529, 536, 543
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	12
SphI	GCATGC	2 cut(s)	45, 329
Sse9I	AATT	5 cut(s)	28, 121, 283, 418, 515
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	358, 453, 468
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	150, 544
TasI	AATT	5 cut(s)	28, 121, 283, 418, 515
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	282, 595
Tru9I	TTAA	2 cut(s)	282, 595
TscAI	CASTG	4 cut(s)	282, 303, 456, 471
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	225, 356, 384
TspRI	CASTG	4 cut(s)	282, 303, 456, 471
XapI	RAATTY	3 cut(s)	121, 418, 515
XceI	RCATGY	2 cut(s)	45, 329
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.