Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000022.1

Orthogroup ID

OG0004169

Physical Location & Seq

Genomic Coordinates Forward (+)

245344 .. 247652

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000022.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ctggctcccgatatctggaaacgcctattcccaccgcgaacccgaagatccattcttcaagtccctgccgggattgtcactcgccggtgccccaatcccggaatggagattaatcttttccggctgtgttccggcctcaaagtcatcggctacttcatgatcttattggtcgcagccatcgttgctgtttcctactacgccgtcgtcgtgctgacgtggggacccgagctgcgaaccggtggcctccactctttcttggccatctccattatcgttgccttccattttctgcttataatgttgttgtggtgttactttatggtagtctttagagaccctggttctgttccggaaaattggaaacctcgtacacaggaggaaattttggaggctggtagttctctaacttcgacggaaatcacagcacccgaggttttcaattccacgcagtctacagatggacaagaaagaagaccagaagtaggctattgtagtcggtgccaaaatgccaagccaccacgatgccatcattgctctgtgtgtcaaagatgtgtacttaagatggatcaccattgtgtttgggtggtgaattgtgttggtgccaccaactacaagtcttttctgcttttcttgctttatacatttttggagacgacaatggacaccttagttttgctgccgaatttcatcaattttttttctgaagccaagagtcattccacatctcctggcaatctagcagttgtttttgtgacttttgtgcttaatttggccttctcattgagtcttctctgtttcgtggttatgcacatatcccttttgtcaagcaataccacttcagtagaggtagtaaactcaagtgctacttttgtttatcaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

294

Amino Acids

32.97

Weight (kDa)

8.46

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00840 AT4G00840
fragaria_vesca	FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410
malus_domestica	MD01G1087100.v1.1 MD07G1157300.v1.1
prunus_persica	Prupe.2G195700_v2.0.a1 Prupe.2G195700_v2.0.a1 Prupe.2G195700_v2.0.a1
pyrus_communis	pycom01g11100 pycom07g15370 pycom07g15390
rosa_chinensis	RchiOBHm_Chr1g0360851
rosa_laevigata	RLG00000027781
rosa_multiflora	Rmu_co8452039.1_g000001 Rmu_ssc0000022.1_g000048
rosa_roxburghii	Rroxscaffold_4G00295760
rosa_rugosa	Rorug01G0282300 Rorug01G0282300 Rorug01G0282300 Rorug01G0282300 Rorug01G0282300
rosa_samantha	Rh1AG294000 Rh1BG258800 Rh1CG276400 Rh1DG289000
rosa_wichuraiana	Rw1G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AccB1I	GGYRCC	3 cut(s)	87, 498, 599
AccI	GTMKAC	1 cut(s)	452
AccII	CGCG	1 cut(s)	37
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	42, 573
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	381, 682
AcuI	CTGAAG	2 cut(s)	723, 822
AfaI	GTAC	2 cut(s)	370, 555
AfiI	CCNNNNNNNGG	3 cut(s)	15, 98, 482
AflII	CTTAAG	1 cut(s)	557
AgeI	ACCGGT	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	59, 439
AjiI	CACGTC	1 cut(s)	216
AjnI	CCWGG	2 cut(s)	337, 727
AleI	CACNNNNGTG	1 cut(s)	573
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	2 cut(s)	327, 644
AlwI	GGATC	2 cut(s)	42, 573
Ama87I	CYCGRG	2 cut(s)	224, 428
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	4 cut(s)	133, 241, 258, 771
ApeKI	GCWGC	3 cut(s)	173, 229, 676
ApoI	RAATTY	2 cut(s)	381, 682
AseI	ATTAAT	1 cut(s)	111
AsiGI	ACCGGT	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	2 cut(s)	70, 99
AsuHPI	GGTGA	2 cut(s)	560, 598
AvaI	CYCGRG	2 cut(s)	224, 428
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	3 cut(s)	87, 498, 599
BbsI	GAAGAC	2 cut(s)	478, 779
BbvI	GCAGC	3 cut(s)	185, 216, 663
BccI	CCATC	5 cut(s)	185, 269, 452, 534, 556
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	339, 729
BcnI	CCSGG	2 cut(s)	70, 99
BcoDI	GTCTC	2 cut(s)	327, 644
BfaI	CTAG	1 cut(s)	737
BfmI	CTRYAG	1 cut(s)	453
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	3 cut(s)	174, 230, 677
BlsI	GCNGC	3 cut(s)	175, 231, 678
Bme1390I	CCNGG	4 cut(s)	70, 99, 339, 729
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	2 cut(s)	224, 428
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	6 cut(s)	6, 89, 222, 223, 500, 601
BmrFI	CCNGG	4 cut(s)	70, 99, 339, 729
BmsI	GCATC	1 cut(s)	512
BpiI	GAAGAC	2 cut(s)	478, 779
BpuEI	CTTGAG	1 cut(s)	841
BpuMI	CCSGG	2 cut(s)	70, 99
BsaI	GGTCTC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	337, 429
BsaWI	WCCGGW	2 cut(s)	236, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 98, 482
Bse118I	RCCGGY	2 cut(s)	84, 236
Bse3DI	GCAATG	1 cut(s)	529
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	339, 729
BseDI	CCNNGG	2 cut(s)	337, 429
BseLI	CCNNNNNNNGG	3 cut(s)	15, 98, 482
BseMI	GCAATG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	3 cut(s)	185, 216, 663
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	135, 243, 260, 773
BshNI	GGYRCC	3 cut(s)	87, 498, 599
BshTI	ACCGGT	1 cut(s)	236
BsiHKCI	CYCGRG	2 cut(s)	224, 428
BsiSI	CCGG	7 cut(s)	69, 85, 99, 121, 132, 237, 350
BslFI	GGGAC	2 cut(s)	47, 234
BslI	CCNNNNNNNGG	3 cut(s)	15, 98, 482
BsmAI	GTCTC	2 cut(s)	327, 644
BsmBI	CGTCTC	1 cut(s)	644
BsmFI	GGGAC	2 cut(s)	47, 234
BsnI	GGCC	4 cut(s)	135, 243, 260, 773
Bso31I	GGTCTC	1 cut(s)	327
BsoBI	CYCGRG	2 cut(s)	224, 428
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	47, 159, 565
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	135, 243, 260, 773
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	6 cut(s)	6, 89, 222, 223, 500, 601
BspPI	GGATC	2 cut(s)	42, 573
BspT107I	GGYRCC	3 cut(s)	87, 498, 599
BspTI	CTTAAG	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	529
BsrFI	RCCGGY	2 cut(s)	84, 236
BssAI	RCCGGY	2 cut(s)	84, 236
BssECI	CCNNGG	2 cut(s)	337, 429
BssMI	GATC	3 cut(s)	47, 159, 565
Bst2UI	CCWGG	2 cut(s)	339, 729
BstAFI	CTTAAG	1 cut(s)	557
BstDEI	CTNAG	1 cut(s)	667
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	3 cut(s)	50, 162, 568
BstMAI	GTCTC	2 cut(s)	327, 644
BstMBI	GATC	3 cut(s)	47, 159, 565
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 531, 631
BstNI	CCWGG	2 cut(s)	339, 729
BstSCI	CCNGG	4 cut(s)	68, 97, 337, 727
BstSFI	CTRYAG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	3 cut(s)	185, 216, 663
BstV2I	GAAGAC	2 cut(s)	478, 779
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	135, 243, 260, 773
BtrI	CACGTC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	156
Cfr10I	RCCGGY	2 cut(s)	84, 236
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	369, 554
CspAI	ACCGGT	1 cut(s)	236
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	2 cut(s)	369, 554
DdeI	CTNAG	1 cut(s)	667
DpnI	GATC	3 cut(s)	49, 161, 567
DpnII	GATC	3 cut(s)	47, 159, 565
EaeI	YGGCCR	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	723, 822
Eco88I	CYCGRG	2 cut(s)	224, 428
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	337, 727
EcoRV	GATATC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	1 cut(s)	160
FaiI	YATR	6 cut(s)	158, 296, 320, 639, 806, 812
FalI	AAGNNNNNCTT	2 cut(s)	850, 882
FaqI	GGGAC	2 cut(s)	47, 234
FatI	CATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	452
Fnu4HI	GCNGC	3 cut(s)	174, 230, 677
Fsp4HI	GCNGC	3 cut(s)	174, 230, 677
FspBI	CTAG	1 cut(s)	737
GluI	GCNGC	3 cut(s)	174, 230, 677
HaeIII	GGCC	4 cut(s)	135, 243, 260, 773
HapII	CCGG	7 cut(s)	69, 85, 99, 121, 132, 237, 350
Hin1II	CATG	1 cut(s)	160
HinfI	GANTC	2 cut(s)	712, 784
HpaII	CCGG	7 cut(s)	69, 85, 99, 121, 132, 237, 350
HphI	GGTGA	2 cut(s)	560, 598
Hpy166II	GTNNAC	4 cut(s)	371, 453, 554, 853
Hpy188I	TCNGA	1 cut(s)	703
Hpy188III	TCNNGA	4 cut(s)	8, 16, 157, 350
Hpy8I	GTNNAC	4 cut(s)	371, 453, 554, 853
Hpy99I	CGWCG	3 cut(s)	206, 209, 415
HpyAV	CCTTC	2 cut(s)	289, 784
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	1 cut(s)	808
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 531, 631
HpyF3I	CTNAG	1 cut(s)	667
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	160
KflI	GGGWCCC	1 cut(s)	221
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	47, 159, 565
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	185, 216, 663
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	1 cut(s)	737
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	76, 311, 751
MalI	GATC	3 cut(s)	49, 161, 567
MboI	GATC	3 cut(s)	47, 159, 565
MboII	GAAGA	4 cut(s)	47, 57, 483, 779
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	7 cut(s)	355, 381, 439, 589, 682, 691, 766
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	2 cut(s)	721, 793
MnlI	CCTC	7 cut(s)	146, 254, 370, 375, 382, 424, 838
Mox20I	TGGCCA	1 cut(s)	260
MroI	TCCGGA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	3 cut(s)	111, 558, 765
MslI	CAYNNNNRTG	2 cut(s)	520, 573
Msp20I	TGGCCA	1 cut(s)	260
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	7 cut(s)	69, 85, 99, 121, 132, 237, 350
MspR9I	CCNGG	4 cut(s)	70, 99, 339, 729
MvaI	CCWGG	2 cut(s)	339, 729
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	182, 531, 631
NciI	CCSGG	2 cut(s)	70, 99
NdeII	GATC	3 cut(s)	47, 159, 565
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	6 cut(s)	6, 89, 222, 223, 500, 601
NmuCI	GTSAC	2 cut(s)	76, 751
OliI	CACNNNNGTG	1 cut(s)	573
PagI	TCATGA	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 204
PfoI	TCCNGGA	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	175, 231, 678
PleI	GAGTC	2 cut(s)	720, 792
PpsI	GAGTC	2 cut(s)	720, 792
PpuMI	RGGWCCY	1 cut(s)	221
PshBI	ATTAAT	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	337, 727
PspGI	CCWGG	2 cut(s)	337, 727
PspN4I	GGNNCC	6 cut(s)	6, 89, 222, 223, 500, 601
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	2 cut(s)	370, 555
RsaNI	GTAC	2 cut(s)	369, 554
RseI	CAYNNNNRTG	2 cut(s)	520, 573
SaqAI	TTAA	3 cut(s)	111, 558, 765
SatI	GCNGC	3 cut(s)	174, 230, 677
Sau3AI	GATC	3 cut(s)	47, 159, 565
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	721, 793
ScrFI	CCNGG	4 cut(s)	70, 99, 339, 729
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	6 cut(s)	218, 231, 367, 435, 668, 849
SfaNI	GCATC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	453
SgrAI	CRCCGGYG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	520, 573
SmlI	CTYRAG	2 cut(s)	557, 856
SmoI	CTYRAG	2 cut(s)	557, 856
Sse9I	AATT	7 cut(s)	355, 381, 439, 589, 682, 691, 766
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	4 cut(s)	68, 97, 337, 727
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	410
TasI	AATT	7 cut(s)	355, 381, 439, 589, 682, 691, 766
TatI	WGTACW	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	111, 558, 765
Tru9I	TTAA	3 cut(s)	111, 558, 765
TseFI	GTSAC	2 cut(s)	76, 751
TseI	GCWGC	3 cut(s)	173, 229, 676
Tsp45I	GTSAC	2 cut(s)	76, 751
TspDTI	ATGAA	2 cut(s)	145, 676
TspGWI	ACGGA	1 cut(s)	428
Vha464I	CTTAAG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	221
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	2 cut(s)	381, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	452
XspI	CTAG	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.