Rroxscaffold_4G00295760

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004169
Physical Location & Seq
Reverse (-)
15813766 .. 15817051
3286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295760.1

Sequence Viewer

Length: 915 bp
ATGGAGATTAATCTTTTCCGGCTGTGTTCCGGCCTCAAAGTCATCGGCTACTTCATGATCTTATTGGTCGCTGCCATCGTTGCTGTTTCCTACTACGCCGTCGTCGTGCTGACGTGGGGACCTGAGCTGCGAACCGGTGGCCTCCACTCTTTCTTGGCCATCTCCATTATCGTTCTCTTCCATTTTCTGGATGAAAAGGGGTCTCAAATGCTTGAGAAGCTCACACAAGTTGAAGATTTGAGAAGAGACTTGAGAGAGATAGACCCTGGTTCTGTTCCGGAAAATTGGAAACCTCGTACACAGGAGGACATTTTGGAGGCTGGTAGTTCTCTTACTTCGTTGGAAATCACAGCACCCGAGGTTTTCAATTCCACGCAGTCTACAGATGGACAAGAAAGAAGACCAGAAGTAGGCTTTTGTAGTCGGTGCCAAAATGCCAAGCCACCACGATGCCATCATTGCTCTGTGTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTTGTGAATTGTGTTGGTGCCACCAACTACAAGTCTTTTCTGCTTTTCTTGATTGTATACCATGTTGCAGTGCTTAATTTGGCCTTCTCATTGAGTCTTCTCTGTTTCGTGGTTATGCACATATCCCTTTTGTCAAGCAATACCACTTCAGTAGAGGTTCATGAGAAGAGAAGAGCAACCAGATGGAAGTATGATTTAGGCAGGAAGAAAAACTTTGAGCAGTTTTGCAAGCCTTCTTGCATCAGACATTTGAGAAGTCTCACTTTTGCTATTTTTGCCCTCCTAAAGGTTTTTGGCACAAAGAAAGCACTGTGGTTCTTCCCATTGTTGTCAAAGGAGGATTTAGACAACATACCTGCACTTCGGGGCCTGGAATTTCCCACAGTATCAGATAGCGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

304

Amino Acids

34.5

Weight (kDa)

8.42

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 139 - 194 2.7e-23 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 874
AccB1I GGYRCC 2 cut(s) 426, 527
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 2 cut(s) 380, 567
AccIII TCCGGA 1 cut(s) 277
AclWI GGATC 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 884
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 2 cut(s) 298, 483
AfiI CCNNNNNNNGG 3 cut(s) 187, 410, 796
AflII CTTAAG 1 cut(s) 485
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 2 cut(s) 233, 367
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 2 cut(s) 265, 879
AleI CACNNNNGTG 1 cut(s) 501
AluBI AGCT 2 cut(s) 127, 220
AluI AGCT 2 cut(s) 127, 220
Alw26I GTCTC 3 cut(s) 207, 240, 773
AlwI GGATC 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 356
Aor13HI TCCGGA 1 cut(s) 277
AoxI GGCC 5 cut(s) 31, 139, 156, 591, 877
ApeKI GCWGC 2 cut(s) 71, 127
ApoI RAATTY 1 cut(s) 884
AseI ATTAAT 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 134
AspS9I GGNCC 2 cut(s) 119, 877
AsuHPI GGTGA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 426, 527
BbsI GAAGAC 2 cut(s) 406, 599
BbvI GCAGC 2 cut(s) 58, 114
BccI CCATC 6 cut(s) 83, 167, 380, 462, 484, 687
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 267, 881
BcoDI GTCTC 3 cut(s) 207, 240, 773
BfmI CTRYAG 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 874
BisI GCNGC 2 cut(s) 72, 128
BlsI GCNGC 2 cut(s) 73, 129
Bme1390I CCNGG 2 cut(s) 267, 881
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 1 cut(s) 356
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 119, 877
BmiI GGNNCC 4 cut(s) 120, 428, 529, 878
BmrFI CCNGG 2 cut(s) 267, 881
BmsI GCATC 2 cut(s) 440, 759
BpiI GAAGAC 2 cut(s) 406, 599
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 233, 271
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 265, 357
BsaWI WCCGGW 2 cut(s) 134, 277
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 410, 796
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 457
BseAI TCCGGA 1 cut(s) 277
BseBI CCWGG 2 cut(s) 267, 881
BseDI CCNNGG 2 cut(s) 265, 357
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 187, 410, 796
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 58, 114
BsgI GTGCAG 1 cut(s) 852
BshFI GGCC 5 cut(s) 33, 141, 158, 593, 879
BshNI GGYRCC 2 cut(s) 426, 527
BshTI ACCGGT 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 4 cut(s) 19, 30, 135, 278
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 3 cut(s) 187, 410, 796
BsmAI GTCTC 3 cut(s) 207, 240, 773
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 5 cut(s) 33, 141, 158, 593, 879
Bso31I GGTCTC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 356
Bsp13I TCCGGA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 57, 493
BspANI GGCC 5 cut(s) 33, 141, 158, 593, 879
BspCNI CTCAG 1 cut(s) 115
BspEI TCCGGA 1 cut(s) 277
BspHI TCATGA 2 cut(s) 54, 670
BspLI GGNNCC 4 cut(s) 120, 428, 529, 878
BspMI ACCTGC 1 cut(s) 874
BspPI GGATC 1 cut(s) 501
BspQI GCTCTTC 1 cut(s) 676
BspT107I GGYRCC 2 cut(s) 426, 527
BspTI CTTAAG 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 265, 357
BssMI GATC 2 cut(s) 57, 493
BssNAI GTATAC 1 cut(s) 568
Bst1107I GTATAC 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 267, 881
Bst4CI ACNGT 2 cut(s) 822, 895
Bst6I CTCTTC 4 cut(s) 182, 238, 671, 676
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 740
BstDEI CTNAG 1 cut(s) 123
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 60, 496
BstMAI GTCTC 3 cut(s) 207, 240, 773
BstMBI GATC 2 cut(s) 57, 493
BstMWI GCNNNNNNNGC 4 cut(s) 80, 217, 459, 785
BstNI CCWGG 2 cut(s) 267, 881
BstSCI CCNGG 2 cut(s) 265, 879
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 58, 114
BstV2I GAAGAC 2 cut(s) 406, 599
BstZ17I GTATAC 1 cut(s) 568
BsuRI GGCC 5 cut(s) 33, 141, 158, 593, 879
BtrI CACGTC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 2 cut(s) 585, 818
BveI ACCTGC 1 cut(s) 874
Cac8I GCNNGC 1 cut(s) 740
CciI TCATGA 2 cut(s) 54, 670
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 119, 877
Csp6I GTAC 2 cut(s) 297, 482
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 3 cut(s) 55, 572, 671
CviQI GTAC 2 cut(s) 297, 482
DdeI CTNAG 1 cut(s) 123
DpnI GATC 2 cut(s) 59, 495
DpnII GATC 2 cut(s) 57, 493
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 4 cut(s) 182, 238, 671, 676
EarI CTCTTC 4 cut(s) 182, 238, 671, 676
Eco31I GGTCTC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 356
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO109I RGGNCCY 2 cut(s) 119, 877
EcoRII CCWGG 2 cut(s) 265, 879
FaeI CATG 3 cut(s) 58, 575, 674
FaiI YATR 8 cut(s) 56, 568, 573, 626, 632, 672, 702, 863
FalI AAGNNNNNCTT 4 cut(s) 707, 739, 757, 789
FaqI GGGAC 1 cut(s) 132
FatI CATG 3 cut(s) 54, 571, 670
FblI GTMKAC 2 cut(s) 380, 567
Fnu4HI GCNGC 2 cut(s) 72, 128
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 72, 128
GluI GCNGC 2 cut(s) 72, 128
HaeIII GGCC 5 cut(s) 33, 141, 158, 593, 879
HapII CCGG 4 cut(s) 19, 30, 135, 278
Hin1II CATG 3 cut(s) 58, 575, 674
HinfI GANTC 1 cut(s) 604
HpaII CCGG 4 cut(s) 19, 30, 135, 278
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 4 cut(s) 299, 381, 482, 568
Hpy188I TCNGA 2 cut(s) 755, 901
Hpy188III TCNNGA 5 cut(s) 55, 188, 278, 559, 671
Hpy8I GTNNAC 4 cut(s) 299, 381, 482, 568
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 2 cut(s) 604, 753
HpyCH4III ACNGT 2 cut(s) 822, 895
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 5 cut(s) 578, 628, 738, 750, 869
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 217, 459, 785
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 3 cut(s) 58, 575, 674
Kpn2I TCCGGA 1 cut(s) 277
Kzo9I GATC 2 cut(s) 57, 493
LguI GCTCTTC 1 cut(s) 676
Lsp1109I GCAGC 2 cut(s) 58, 114
LweI GCATC 2 cut(s) 440, 759
MaeII ACGT 1 cut(s) 113
MalI GATC 2 cut(s) 59, 495
MboI GATC 2 cut(s) 57, 493
MboII GAAGA 9 cut(s) 169, 245, 255, 411, 599, 688, 693, 727, 820
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 5 cut(s) 283, 367, 517, 586, 884
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 1 cut(s) 321
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 277
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 9, 486, 585
MslI CAYNNNNRTG 2 cut(s) 448, 501
Msp20I TGGCCA 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 4 cut(s) 19, 30, 135, 278
MspR9I CCNGG 2 cut(s) 267, 881
MvaI CCWGG 2 cut(s) 267, 881
MwoI GCNNNNNNNGC 4 cut(s) 80, 217, 459, 785
NdeII GATC 2 cut(s) 57, 493
NlaIII CATG 3 cut(s) 58, 575, 674
NlaIV GGNNCC 4 cut(s) 120, 428, 529, 878
OliI CACNNNNGTG 1 cut(s) 501
PagI TCATGA 2 cut(s) 54, 670
PciSI GCTCTTC 1 cut(s) 676
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 102
PflMI CCANNNNNTGG 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 2 cut(s) 73, 129
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
PpuMI RGGWCCY 1 cut(s) 119
PshBI ATTAAT 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 265, 879
PspGI CCWGG 2 cut(s) 265, 879
PspN4I GGNNCC 4 cut(s) 120, 428, 529, 878
PspPI GGNCC 2 cut(s) 119, 877
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 298, 483
RsaNI GTAC 2 cut(s) 297, 482
RseI CAYNNNNRTG 2 cut(s) 448, 501
SapI GCTCTTC 1 cut(s) 676
SaqAI TTAA 3 cut(s) 9, 486, 585
SatI GCNGC 2 cut(s) 72, 128
Sau3AI GATC 2 cut(s) 57, 493
Sau96I GGNCC 2 cut(s) 119, 877
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 2 cut(s) 267, 881
SetI ASST 9 cut(s) 116, 124, 129, 222, 295, 363, 669, 801, 868
SfaNI GCATC 2 cut(s) 440, 759
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 448, 501
SmlI CTYRAG 3 cut(s) 212, 250, 485
SmoI CTYRAG 3 cut(s) 212, 250, 485
Sse9I AATT 5 cut(s) 283, 367, 517, 586, 884
StyD4I CCNGG 2 cut(s) 265, 879
TaaI ACNGT 2 cut(s) 822, 895
TaiI ACGT 1 cut(s) 116
TasI AATT 5 cut(s) 283, 367, 517, 586, 884
TatI WGTACW 1 cut(s) 481
Tru1I TTAA 3 cut(s) 9, 486, 585
Tru9I TTAA 3 cut(s) 9, 486, 585
TscAI CASTG 2 cut(s) 585, 825
TseI GCWGC 2 cut(s) 71, 127
TspDTI ATGAA 3 cut(s) 43, 207, 659
TspRI CASTG 2 cut(s) 585, 825
Van91I CCANNNNNTGG 1 cut(s) 187
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 119
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 1 cut(s) 884
XmiI GTMKAC 2 cut(s) 380, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.