FvH4_7g17410

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004169
Physical Location & Seq
Forward (+)
14805681 .. 14810935
5255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17410.t4

Sequence Viewer

Length: 927 bp
ATGGAGATTAACCTGTTCCGGCTATGCTCCGGCCTCAAAGTCATCGGCTACTTCATGATCTTATTGGTCGCTGCCATCGTTTCTGTTTCCTACTACGCCGTCGTCGTGCTGACGTGGGGCCCCGAGCTCCGAACCGGCGGCTTCCACTCTTTTCTGGCCATCTCCATTGTCGTTCTCTTCCATTTTTTGCTGGTAATGTTATTGTGGTGTTACTTTATGGTAGTCTTTACAGACCCTGGTTCTGTTCCGGAAAACTGGAAACCTCTTACACAGGAGGAAATTTTGGAGGCTGGTAGTTCTCTGACTTCATCGGAGATCACAGCACCTGAGGCTTTCACTTCCATGCACTCTACAGATGGACAGGAAAGAAGACCAGAAGTAGCCTATTGTAGTCGTTGCCAAAATGCCAAGCCACCACGGTGCCATCATTGCTCAGTTTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTTAATTGTGTTGGTGCCACCAACTACAAGTCATTTCTACTTTTCTTGCTTTATACATTTTTGGAGACGACAATGAACACTCTAGTTTTGCTGCCGAATTTCATCAACTTTTTTTCTGAAGCCAAGAGTCATTCCACATCTCCTGGCAATCTAGCAGTCGTTTTTGTGACTTTTGTGCTTAATTTGGCCTTCTCATTGAGTCTGCTTTGTTTTGTTGTTATGCACATATCCCTTTTGTCAAGCAATACCACTTCGGTAGAGGTTCATGAGAAGAGAAGAGGAACCAGATGGAAGTATGATTTAGGCAGGAAGAAGAACTTTGAGCAGGTTTTCGGCACAAAGAAAGCATTGTGGTTCTTCCCATTGTTGTCAAAGGAGGATATAGACAACATACCTGCACTTCGGGGTCTGGAATTTCCCACAGTATCAGATAGTGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

309

Amino Acids

34.83

Weight (kDa)

7.11

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 128 - 251 5.2e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 799, 886
AccB1I GGYRCC 2 cut(s) 420, 497
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 3 cut(s) 279, 580, 896
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 1 cut(s) 453
AflII CTTAAG 1 cut(s) 455
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 2 cut(s) 235, 625
AleI CACNNNNGTG 2 cut(s) 418, 471
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 1 cut(s) 471
AlwNI CAGNNNCTG 2 cut(s) 236, 326
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 4 cut(s) 31, 118, 156, 669
ApaI GGGCCC 1 cut(s) 122
ApeKI GCWGC 2 cut(s) 71, 574
ApoI RAATTY 3 cut(s) 279, 580, 896
AspS9I GGNCC 2 cut(s) 118, 119
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 327
BaeGI GKGCMC 1 cut(s) 122
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 420, 497
BanII GRGCYC 2 cut(s) 122, 129
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 58, 561
BccI CCATC 6 cut(s) 83, 167, 350, 432, 454, 765
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 237, 627
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 566, 635
BfmI CTRYAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 2 cut(s) 799, 886
BisI GCNGC 3 cut(s) 72, 139, 575
BlsI GCNGC 3 cut(s) 73, 140, 576
Bme1390I CCNGG 2 cut(s) 237, 627
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 2 cut(s) 118, 119
BmiI GGNNCC 6 cut(s) 119, 120, 121, 422, 499, 766
BmrFI CCNGG 2 cut(s) 237, 627
BpiI GAAGAC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 235, 416
BsaWI WCCGGW 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 260
Bse21I CCTNAGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 427
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 237, 627
BseDI CCNNGG 2 cut(s) 235, 416
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 318, 447
BseNI ACTGG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 122
BseXI GCAGC 2 cut(s) 58, 561
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 4 cut(s) 33, 120, 158, 671
BshNI GGYRCC 2 cut(s) 420, 497
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 4 cut(s) 19, 30, 135, 248
BsmAI GTCTC 1 cut(s) 542
BsmBI CGTCTC 1 cut(s) 542
BsnI GGCC 4 cut(s) 33, 120, 158, 671
BsoBI CYCGRG 1 cut(s) 122
Bsp120I GGGCCC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 122, 129
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 3 cut(s) 57, 315, 463
BspACI CCGC 1 cut(s) 138
BspANI GGCC 4 cut(s) 33, 120, 158, 671
BspCNI CTCAG 2 cut(s) 319, 446
BspEI TCCGGA 1 cut(s) 247
BspHI TCATGA 2 cut(s) 54, 748
BspLI GGNNCC 6 cut(s) 119, 120, 121, 422, 499, 766
BspMI ACCTGC 2 cut(s) 799, 886
BspPI GGATC 1 cut(s) 471
BspT107I GGYRCC 2 cut(s) 420, 497
BspTI CTTAAG 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 235, 416
BssMI GATC 3 cut(s) 57, 315, 463
Bst2UI CCWGG 2 cut(s) 237, 627
Bst4CI ACNGT 2 cut(s) 420, 907
Bst6I CTCTTC 3 cut(s) 182, 749, 754
BstAFI CTTAAG 1 cut(s) 455
BstDEI CTNAG 2 cut(s) 327, 433
BstDSI CCRYGG 1 cut(s) 416
BstKTI GATC 3 cut(s) 60, 318, 466
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 3 cut(s) 57, 315, 463
BstMWI GCNNNNNNNGC 2 cut(s) 329, 429
BstNI CCWGG 2 cut(s) 237, 627
BstSCI CCNGG 2 cut(s) 235, 625
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 58, 561
BstV2I GAAGAC 1 cut(s) 376
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 4 cut(s) 33, 120, 158, 671
BtgI CCRYGG 1 cut(s) 416
BtrI CACGTC 1 cut(s) 114
BveI ACCTGC 2 cut(s) 799, 886
CaiI CAGNNNCTG 2 cut(s) 236, 326
CciI TCATGA 2 cut(s) 54, 748
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 118, 119
Csp6I GTAC 1 cut(s) 452
CviAII CATG 3 cut(s) 55, 343, 749
CviQI GTAC 1 cut(s) 452
DdeI CTNAG 2 cut(s) 327, 433
DpnI GATC 3 cut(s) 59, 317, 465
DpnII GATC 3 cut(s) 57, 315, 463
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 3 cut(s) 182, 749, 754
EarI CTCTTC 3 cut(s) 182, 749, 754
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 2 cut(s) 122, 129
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 621
Eco81I CCTNAGG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 2 cut(s) 118, 119
EcoRII CCWGG 2 cut(s) 235, 625
EcoT38I GRGCYC 2 cut(s) 122, 129
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 3 cut(s) 58, 346, 752
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FatI CATG 3 cut(s) 54, 342, 748
Fnu4HI GCNGC 3 cut(s) 72, 139, 575
FriOI GRGCYC 2 cut(s) 122, 129
Fsp4HI GCNGC 3 cut(s) 72, 139, 575
FspBI CTAG 2 cut(s) 566, 635
GluI GCNGC 3 cut(s) 72, 139, 575
HaeIII GGCC 4 cut(s) 33, 120, 158, 671
HapII CCGG 4 cut(s) 19, 30, 135, 248
Hin1II CATG 3 cut(s) 58, 346, 752
HinfI GANTC 2 cut(s) 610, 682
HpaII CCGG 4 cut(s) 19, 30, 135, 248
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 5 cut(s) 131, 303, 313, 601, 913
Hpy188III TCNNGA 4 cut(s) 55, 248, 749, 893
Hpy8I GTNNAC 1 cut(s) 452
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 1 cut(s) 682
HpyCH4III ACNGT 2 cut(s) 420, 907
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 346, 706, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 429
HpyF3I CTNAG 2 cut(s) 327, 433
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 3 cut(s) 58, 346, 752
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 57, 315, 463
LmnI GCTCC 2 cut(s) 32, 132
Lsp1109I GCAGC 2 cut(s) 58, 561
MaeI CTAG 2 cut(s) 566, 635
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 209, 649
MalI GATC 3 cut(s) 59, 317, 465
MboI GATC 3 cut(s) 57, 315, 463
MboII GAAGA 7 cut(s) 169, 381, 766, 771, 805, 808, 832
MhlI GDGCHC 2 cut(s) 122, 129
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 5 cut(s) 279, 487, 580, 664, 896
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 2 cut(s) 619, 691
MnlI CCTC 9 cut(s) 44, 268, 273, 280, 322, 736, 755, 853, 913
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 158
MseI TTAA 4 cut(s) 9, 456, 486, 663
MslI CAYNNNNRTG 3 cut(s) 341, 418, 471
Msp20I TGGCCA 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 4 cut(s) 19, 30, 135, 248
MspR9I CCNGG 2 cut(s) 237, 627
MvaI CCWGG 2 cut(s) 237, 627
MwoI GCNNNNNNNGC 2 cut(s) 329, 429
NdeII GATC 3 cut(s) 57, 315, 463
NlaIII CATG 3 cut(s) 58, 346, 752
NlaIV GGNNCC 6 cut(s) 119, 120, 121, 422, 499, 766
NmuCI GTSAC 1 cut(s) 649
OliI CACNNNNGTG 2 cut(s) 418, 471
PagI TCATGA 2 cut(s) 54, 748
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 102
PkrI GCNGC 3 cut(s) 73, 140, 576
PleI GAGTC 2 cut(s) 618, 690
PpsI GAGTC 2 cut(s) 618, 690
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 235, 625
PspGI CCWGG 2 cut(s) 235, 625
PspN4I GGNNCC 6 cut(s) 119, 120, 121, 422, 499, 766
PspOMI GGGCCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 118, 119
PstNI CAGNNNCTG 2 cut(s) 236, 326
RsaI GTAC 1 cut(s) 453
RsaNI GTAC 1 cut(s) 452
RseI CAYNNNNRTG 3 cut(s) 341, 418, 471
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 4 cut(s) 9, 456, 486, 663
SatI GCNGC 3 cut(s) 72, 139, 575
Sau3AI GATC 3 cut(s) 57, 315, 463
Sau96I GGNCC 2 cut(s) 118, 119
SchI GAGTC 2 cut(s) 619, 691
ScrFI CCNGG 2 cut(s) 237, 627
SduI GDGCHC 2 cut(s) 122, 129
SetI ASST 8 cut(s) 15, 116, 129, 265, 328, 747, 813, 880
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 3 cut(s) 341, 418, 471
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 5 cut(s) 279, 487, 580, 664, 896
SsiI CCGC 1 cut(s) 138
SspMI CTAG 2 cut(s) 566, 635
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 235, 625
TaaI ACNGT 2 cut(s) 420, 907
TaiI ACGT 1 cut(s) 116
TasI AATT 5 cut(s) 279, 487, 580, 664, 896
TatI WGTACW 1 cut(s) 451
TauI GCSGC 1 cut(s) 141
Tru1I TTAA 4 cut(s) 9, 456, 486, 663
Tru9I TTAA 4 cut(s) 9, 456, 486, 663
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 71, 574
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 5 cut(s) 43, 297, 572, 574, 737
Vha464I CTTAAG 1 cut(s) 455
XapI RAATTY 3 cut(s) 279, 580, 896
XspI CTAG 2 cut(s) 566, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.