Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004169

Physical Location & Seq

Genomic Coordinates Forward (+)

17666625 .. 17669507

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g15370.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAAGATAAACCTCTTCAGGCTCTGCTCCGGCCTCAAAGTCATCGGCTACTTCATGATCCTCCTCGTTGCTGCCATCATCTCCGTCTCCTACTATACCGTCGTCGTCGTCACTTGGGCACCCAAGCTGCTCCACGGCGGGGTGCACTCGTTTCTAGCTTTCTTCATCATCGTAATGTTCCATATTCTGCTTGTAATGTTACTGTGGAGTTACTTTATGGTAGTCTTTAAAGACCCTGGTTCTGTTCCGGAAAACTGGAAACCTCTAATAGACGAGGAAAATTTGGAGGCTGGTAGTTCTCTGACTTTGTCAGAAAATATCGAACCCAAGGTTTTCACTTCAACACAACCTTCAGATGGGGGAGAAAGACGACCACAACCTTCAGATGGAGTAGAAAGACGACCACAAGTACGGTATTGTAGTCGATGCCAAAATGGCAAGCCACCACGATGCCATCATTGCTCTGTCTGTCAAAGATGTGTACTTAAGATCGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGTGCACGCAACTACAAGTTTTTTCTTCTTTTCTTGCTTTATACATTTCTGGAGACGACGATGGATACCTTAGTTTTGCTGCCAAATTTTGTCGATTTTTTCTCTGACGCCAAGGATCATTCCGAATCTCCTGGCCATCTTGCAGTCATTTTTTTTACTTTTGTGCTTAATTTAGCCTTTGCACTGAGTCTTCTTTGTTTTGTGGTTATGCATGGGTCCCTTCTGTCTAGCAACACTACTACAGTTGAGGTTCATGAAAAGAAAGGAACAATCAGATGGAAGTATGACTTGGGCAGGAAGAAGAATTTTGAGCAGGTTTTTGGCACGAAGAAGGCACTGTGGCTCTTACCACTGTTCTCAAAAGAGGATTTAGACAACGTACCTGCTCTTCGGGGACTGGAATTTCCGACACTTTCAGATACTGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

319

Amino Acids

36.18

Weight (kDa)

8.01

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00840 AT4G00840
fragaria_vesca	FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410 FvH4_7g17410
malus_domestica	MD01G1087100.v1.1 MD07G1157300.v1.1
prunus_persica	Prupe.2G195700_v2.0.a1 Prupe.2G195700_v2.0.a1 Prupe.2G195700_v2.0.a1
pyrus_communis	pycom01g11100 pycom07g15370 pycom07g15390
rosa_chinensis	RchiOBHm_Chr1g0360851
rosa_laevigata	RLG00000027781
rosa_multiflora	Rmu_co8452039.1_g000001 Rmu_ssc0000022.1_g000048
rosa_roxburghii	Rroxscaffold_4G00295760
rosa_rugosa	Rorug01G0282300 Rorug01G0282300 Rorug01G0282300 Rorug01G0282300 Rorug01G0282300
rosa_samantha	Rh1AG294000 Rh1BG258800 Rh1CG276400 Rh1DG289000
rosa_wichuraiana	Rw1G026020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	829, 916
AccB1I	GGYRCC	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	2 cut(s)	52, 648
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	4 cut(s)	280, 610, 829, 926
AcuI	CTGAAG	2 cut(s)	336, 366
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	3 cut(s)	411, 483, 906
AfiI	CCNNNNNNNGG	3 cut(s)	139, 356, 386
AflII	CTTAAG	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	342
AjnI	CCWGG	2 cut(s)	235, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AleI	CACNNNNGTG	1 cut(s)	501
AluBI	AGCT	2 cut(s)	127, 158
AluI	AGCT	2 cut(s)	127, 158
Alw21I	GWGCWC	2 cut(s)	147, 532
Alw26I	GTCTC	2 cut(s)	91, 572
Alw44I	GTGCAC	2 cut(s)	143, 528
AlwI	GGATC	2 cut(s)	52, 648
AlwNI	CAGNNNCTG	2 cut(s)	24, 947
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	2 cut(s)	31, 658
ApaLI	GTGCAC	2 cut(s)	143, 528
ApeKI	GCWGC	3 cut(s)	71, 127, 604
ApoI	RAATTY	4 cut(s)	280, 610, 829, 926
AspS9I	GGNCC	1 cut(s)	741
AsuHPI	GGTGA	2 cut(s)	488, 526
AvaII	GGWCC	1 cut(s)	741
BaeGI	GKGCMC	3 cut(s)	121, 147, 532
BaeI	ACNNNNGTAYC	2 cut(s)	582, 615
BalI	TGGCCA	1 cut(s)	660
BanI	GGYRCC	1 cut(s)	118
BarI	GAAGNNNNNNTAC	2 cut(s)	897, 929
BbsI	GAAGAC	1 cut(s)	707
Bbv12I	GWGCWC	2 cut(s)	147, 532
BbvI	GCAGC	3 cut(s)	58, 114, 591
BccI	CCATC	7 cut(s)	83, 350, 380, 462, 580, 669, 795
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	237, 657
BciVI	GTATCC	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	91, 572
BfaI	CTAG	2 cut(s)	155, 753
BfmI	CTRYAG	1 cut(s)	765
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	2 cut(s)	829, 916
BfuI	GTATCC	1 cut(s)	583
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	72, 128, 605
BlsI	GCNGC	3 cut(s)	73, 129, 606
Bme1390I	CCNGG	2 cut(s)	237, 657
Bme18I	GGWCC	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	741
BmiI	GGNNCC	3 cut(s)	120, 742, 743
BmrFI	CCNGG	2 cut(s)	237, 657
BmsI	GCATC	2 cut(s)	416, 440
BpiI	GAAGAC	1 cut(s)	707
BpmI	CTGGAG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	633
BsaJI	CCNNGG	4 cut(s)	133, 235, 327, 636
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 356, 386
Bse1I	ACTGG	2 cut(s)	260, 927
Bse3DI	GCAATG	1 cut(s)	457
BseAI	TCCGGA	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	237, 657
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	133, 235, 327, 636
BseLI	CCNNNNNNNGG	3 cut(s)	139, 356, 386
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	2 cut(s)	701, 939
BseNI	ACTGG	2 cut(s)	260, 927
BseRI	GAGGAG	1 cut(s)	53
BseSI	GKGCMC	3 cut(s)	121, 147, 532
BseXI	GCAGC	3 cut(s)	58, 114, 591
BshFI	GGCC	2 cut(s)	33, 660
BshNI	GGYRCC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	2 cut(s)	147, 532
BsiSI	CCGG	2 cut(s)	30, 248
BslFI	GGGAC	2 cut(s)	727, 933
BslI	CCNNNNNNNGG	3 cut(s)	139, 356, 386
BsmAI	GTCTC	2 cut(s)	91, 572
BsmBI	CGTCTC	2 cut(s)	91, 572
BsmFI	GGGAC	2 cut(s)	727, 933
BsnI	GGCC	2 cut(s)	33, 660
Bsp1286I	GDGCHC	3 cut(s)	121, 147, 532
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	57, 489, 493, 640
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	2 cut(s)	33, 660
BspCNI	CTCAG	2 cut(s)	702, 940
BspDI	ATCGAT	1 cut(s)	492
BspEI	TCCGGA	1 cut(s)	247
BspHI	TCATGA	2 cut(s)	54, 778
BspLI	GGNNCC	3 cut(s)	120, 742, 743
BspMI	ACCTGC	2 cut(s)	829, 916
BspPI	GGATC	2 cut(s)	52, 648
BspQI	GCTCTTC	1 cut(s)	918
BspT107I	GGYRCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	260, 927
BssECI	CCNNGG	4 cut(s)	133, 235, 327, 636
BssMI	GATC	4 cut(s)	57, 489, 493, 640
BssNI	GRCGYC	1 cut(s)	633
BssT1I	CCWWGG	2 cut(s)	327, 636
Bst2UI	CCWGG	2 cut(s)	237, 657
Bst4CI	ACNGT	6 cut(s)	100, 204, 414, 769, 864, 879
Bst6I	CTCTTC	2 cut(s)	20, 918
BstACI	GRCGYC	1 cut(s)	633
BstAFI	CTTAAG	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	440, 532
BstDEI	CTNAG	3 cut(s)	595, 710, 948
BstDSI	CCRYGG	1 cut(s)	133
BstKTI	GATC	4 cut(s)	60, 492, 496, 643
BstMAI	GTCTC	2 cut(s)	91, 572
BstMBI	GATC	4 cut(s)	57, 489, 493, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 459
BstNI	CCWGG	2 cut(s)	237, 657
BstSCI	CCNGG	2 cut(s)	235, 655
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	3 cut(s)	121, 147, 532
BstV1I	GCAGC	3 cut(s)	58, 114, 591
BstV2I	GAAGAC	1 cut(s)	707
Bsu15I	ATCGAT	1 cut(s)	492
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	2 cut(s)	33, 660
BsuTUI	ATCGAT	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	133
BtsIMutI	CAGTG	3 cut(s)	707, 860, 875
BveI	ACCTGC	2 cut(s)	829, 916
Cac8I	GCNNGC	2 cut(s)	440, 532
CaiI	CAGNNNCTG	2 cut(s)	24, 947
CciI	TCATGA	2 cut(s)	54, 778
Cfr13I	GGNCC	1 cut(s)	741
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	410, 482, 905
CviAII	CATG	3 cut(s)	55, 737, 779
CviQI	GTAC	3 cut(s)	410, 482, 905
DdeI	CTNAG	3 cut(s)	595, 710, 948
DpnI	GATC	4 cut(s)	59, 491, 495, 642
DpnII	GATC	4 cut(s)	57, 489, 493, 640
DraI	TTTAAA	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	658
Eam1104I	CTCTTC	2 cut(s)	20, 918
EarI	CTCTTC	2 cut(s)	20, 918
Eco130I	CCWWGG	2 cut(s)	327, 636
Eco47I	GGWCC	1 cut(s)	741
Eco57I	CTGAAG	2 cut(s)	336, 366
EcoO109I	RGGNCCY	1 cut(s)	741
EcoRII	CCWGG	2 cut(s)	235, 655
EcoT14I	CCWWGG	2 cut(s)	327, 636
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	327, 636
Esp3I	CGTCTC	2 cut(s)	91, 572
FaeI	CATG	3 cut(s)	58, 740, 782
FaiI	YATR	9 cut(s)	56, 96, 183, 218, 567, 734, 738, 780, 810
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	2 cut(s)	727, 933
FatI	CATG	3 cut(s)	54, 736, 778
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	3 cut(s)	72, 128, 605
Fsp4HI	GCNGC	3 cut(s)	72, 128, 605
FspBI	CTAG	2 cut(s)	155, 753
GluI	GCNGC	3 cut(s)	72, 128, 605
GsuI	CTGGAG	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	33, 660
HapII	CCGG	2 cut(s)	30, 248
HgaI	GACGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	3 cut(s)	58, 740, 782
HinfI	GANTC	2 cut(s)	650, 712
HpaII	CCGG	2 cut(s)	30, 248
HphI	GGTGA	2 cut(s)	488, 526
Hpy166II	GTNNAC	3 cut(s)	145, 482, 530
Hpy188I	TCNGA	9 cut(s)	303, 313, 355, 385, 631, 649, 800, 933, 943
Hpy188III	TCNNGA	4 cut(s)	55, 248, 575, 779
Hpy8I	GTNNAC	3 cut(s)	145, 482, 530
Hpy99I	CGWCG	4 cut(s)	104, 107, 110, 586
HpyAV	CCTTC	4 cut(s)	360, 390, 755, 850
HpyCH4III	ACNGT	6 cut(s)	100, 204, 414, 769, 864, 879
HpyCH4IV	ACGT	1 cut(s)	903
HpyCH4V	TGCA	5 cut(s)	145, 530, 668, 707, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 459
HpyF3I	CTNAG	3 cut(s)	595, 710, 948
HpySE526I	ACGT	1 cut(s)	903
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	3 cut(s)	58, 740, 782
KflI	GGGWCCC	1 cut(s)	741
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	57, 489, 493, 640
LguI	GCTCTTC	1 cut(s)	918
LmnI	GCTCC	2 cut(s)	32, 135
Lsp1109I	GCAGC	3 cut(s)	58, 114, 591
LweI	GCATC	2 cut(s)	416, 440
MaeI	CTAG	2 cut(s)	155, 753
MaeII	ACGT	1 cut(s)	903
MaeIII	GTNAC	3 cut(s)	109, 198, 209
MalI	GATC	4 cut(s)	59, 491, 495, 642
MboI	GATC	4 cut(s)	57, 489, 493, 640
MboII	GAAGA	9 cut(s)	7, 16, 154, 542, 707, 835, 838, 865, 905
MhlI	GDGCHC	3 cut(s)	121, 147, 532
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	6 cut(s)	280, 517, 610, 694, 829, 926
MluNI	TGGCCA	1 cut(s)	660
MlyI	GAGTC	1 cut(s)	721
MmeI	TCCRAC	1 cut(s)	956
Mox20I	TGGCCA	1 cut(s)	660
Mph1103I	ATGCAT	1 cut(s)	738
MroI	TCCGGA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	3 cut(s)	228, 486, 693
MslI	CAYNNNNRTG	3 cut(s)	173, 448, 501
Msp20I	TGGCCA	1 cut(s)	660
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	2 cut(s)	30, 248
MspR9I	CCNGG	2 cut(s)	237, 657
MvaI	CCWGG	2 cut(s)	237, 657
MwoI	GCNNNNNNNGC	2 cut(s)	435, 459
NdeII	GATC	4 cut(s)	57, 489, 493, 640
NlaIII	CATG	3 cut(s)	58, 740, 782
NlaIV	GGNNCC	3 cut(s)	120, 742, 743
NmuCI	GTSAC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	738
OliI	CACNNNNGTG	1 cut(s)	501
PagI	TCATGA	2 cut(s)	54, 778
PciSI	GCTCTTC	1 cut(s)	918
PfeI	GAWTC	1 cut(s)	650
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	3 cut(s)	73, 129, 606
PleI	GAGTC	1 cut(s)	720
PpsI	GAGTC	1 cut(s)	720
PpuMI	RGGWCCY	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	741
Psp6I	CCWGG	2 cut(s)	235, 655
PspGI	CCWGG	2 cut(s)	235, 655
PspN4I	GGNNCC	3 cut(s)	120, 742, 743
PspPI	GGNCC	1 cut(s)	741
PspPPI	RGGWCCY	1 cut(s)	741
PstNI	CAGNNNCTG	2 cut(s)	24, 947
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	3 cut(s)	411, 483, 906
RsaNI	GTAC	3 cut(s)	410, 482, 905
RseI	CAYNNNNRTG	3 cut(s)	173, 448, 501
SapI	GCTCTTC	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	228, 486, 693
SatI	GCNGC	3 cut(s)	72, 128, 605
Sau3AI	GATC	4 cut(s)	57, 489, 493, 640
Sau96I	GGNCC	1 cut(s)	741
SchI	GAGTC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	237, 657
SduI	GDGCHC	3 cut(s)	121, 147, 532
SfaNI	GCATC	2 cut(s)	416, 440
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	741
SmiMI	CAYNNNNRTG	3 cut(s)	173, 448, 501
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	6 cut(s)	280, 517, 610, 694, 829, 926
SsiI	CCGC	1 cut(s)	138
SspMI	CTAG	2 cut(s)	155, 753
StyD4I	CCNGG	2 cut(s)	235, 655
StyI	CCWWGG	2 cut(s)	327, 636
TaaI	ACNGT	6 cut(s)	100, 204, 414, 769, 864, 879
TaiI	ACGT	1 cut(s)	906
TaqI	TCGA	4 cut(s)	321, 424, 492, 618
TasI	AATT	6 cut(s)	280, 517, 610, 694, 829, 926
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	3 cut(s)	228, 486, 693
Tru9I	TTAA	3 cut(s)	228, 486, 693
TscAI	CASTG	3 cut(s)	714, 867, 882
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	71, 127, 604
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	5 cut(s)	17, 43, 154, 767, 795
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	714, 867, 882
Tth111I	GACNNNGTC	1 cut(s)	307
Vha464I	CTTAAG	1 cut(s)	485
VneI	GTGCAC	2 cut(s)	143, 528
VpaK11BI	GGWCC	1 cut(s)	741
XapI	RAATTY	4 cut(s)	280, 610, 829, 926
XspI	CTAG	2 cut(s)	155, 753
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.