MD07G1157300.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0004169
Physical Location & Seq
Forward (+)
22853236 .. 22855125
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1157300.v1.1.491

Sequence Viewer

Length: 732 bp
ATGTTATTGTGGGGTTACTTTATGGTAGTCTTTAAAGACCCTGGTTCTGTTCCGGAAAATTGGAAACCTCTTATAGATGAGGAAAATTTGGAGGCTGGTAGTTCTCTGACTTTGTCAGAAAATATCGAACCCGAGGCTTTCACTTCAACACAATCTTCAGGTGGAGGAGAAAGACGACCACAAGTACAGTATTGTAGTCCATGCCAAAATGGCAAGCCACCACGATGCCATCATTGCTCTGTCTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGTGCACGCAACTACAAGTTTTTTCTTCTTTTCTTGCTTTATACATTTCTGGAAACGACGATGGATACCTTAGTTTTGCTGCCAAATTTTATCGATTTTTTCTCTGAAGCCATGGATCATTCCGAATCTCCTGGCCATCTTGCAGTCGTTTTTTTGGCTTTTGTACTTAATTTAGCCTTTGCACTGAGTCTTCTTTGTTTTGTCGTTATGCATGCGTCCCTTCTGTCTAGCAACACCACTACAGTTGAGGTTCATGAAAAGAGAGGAGCAATCGGATGGAAGTATGACTTGGGCAGGAAGAAGAATTTTGAGCAGGTTTTCGGCACGAAGAAGGCACTGTGGCTGTTACCACTGTTCTCAAAAGAGGATTTAGACAACGTACCTGCTCTTCGGGGACTGGAATTTCCAACACTTTCAGATACTGATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

244

Amino Acids

27.43

Weight (kDa)

5.6

Isoelectric Point (pI)

38.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 62 - 186 1.1e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 604, 691
AccIII TCCGGA 1 cut(s) 52
AclWI GGATC 2 cut(s) 276, 423
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 4 cut(s) 85, 385, 604, 701
AcuI CTGAAG 2 cut(s) 141, 426
AfaI GTAC 4 cut(s) 186, 258, 465, 681
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 147
AjnI CCWGG 2 cut(s) 40, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 276
Alw21I GWGCWC 1 cut(s) 307
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 2 cut(s) 276, 423
AlwNI CAGNNNCTG 1 cut(s) 722
Ama87I CYCGRG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 52
AoxI GGCC 1 cut(s) 433
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 4 cut(s) 85, 385, 604, 701
AsuHPI GGTGA 2 cut(s) 263, 301
AvaI CYCGRG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 307
BaeI ACNNNNGTAYC 3 cut(s) 357, 390, 711
BalI TGGCCA 1 cut(s) 435
BarI GAAGNNNNNNTAC 2 cut(s) 672, 704
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 366
BccI CCATC 5 cut(s) 237, 259, 355, 444, 570
BciT130I CCWGG 2 cut(s) 42, 432
BciVI GTATCC 1 cut(s) 358
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 2 cut(s) 604, 691
BfuI GTATCC 1 cut(s) 358
BglI GCCNNNNNGGC 1 cut(s) 210
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 2 cut(s) 42, 432
BmeT110I CYCGRG 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 42, 432
BmsI GCATC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 482
Bsa29I ATCGAT 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 40, 132, 411
BsaWI WCCGGW 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 232
BseAI TCCGGA 1 cut(s) 52
BseBI CCWGG 2 cut(s) 42, 432
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 40, 132, 411
BseGI GGATG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 702
BseRI GAGGAG 2 cut(s) 180, 579
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 366
BshFI GGCC 1 cut(s) 435
BshVI ATCGAT 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 2 cut(s) 502, 708
BsmFI GGGAC 2 cut(s) 502, 708
BsnI GGCC 1 cut(s) 435
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 307
Bsp13I TCCGGA 1 cut(s) 52
Bsp143I GATC 2 cut(s) 268, 415
Bsp19I CCATGG 1 cut(s) 411
BspANI GGCC 1 cut(s) 435
BspCNI CTCAG 1 cut(s) 477
BspDI ATCGAT 1 cut(s) 393
BspEI TCCGGA 1 cut(s) 52
BspHI TCATGA 1 cut(s) 553
BspMI ACCTGC 2 cut(s) 604, 691
BspPI GGATC 2 cut(s) 276, 423
BspQI GCTCTTC 1 cut(s) 693
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 702
BssECI CCNNGG 3 cut(s) 40, 132, 411
BssMI GATC 2 cut(s) 268, 415
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 2 cut(s) 42, 432
Bst4CI ACNGT 4 cut(s) 189, 544, 639, 654
Bst6I CTCTTC 1 cut(s) 693
BstAFI CTTAAG 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 215, 307, 513
BstDEI CTNAG 2 cut(s) 370, 485
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 581
BstKTI GATC 2 cut(s) 271, 418
BstMBI GATC 2 cut(s) 268, 415
BstMWI GCNNNNNNNGC 2 cut(s) 210, 234
BstNI CCWGG 2 cut(s) 42, 432
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 2 cut(s) 40, 430
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 482
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 1 cut(s) 358
BsuRI GGCC 1 cut(s) 435
BsuTUI ATCGAT 1 cut(s) 393
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 581
BtsIMutI CAGTG 3 cut(s) 482, 635, 650
BveI ACCTGC 2 cut(s) 604, 691
Cac8I GCNNGC 3 cut(s) 215, 307, 513
CaiI CAGNNNCTG 1 cut(s) 722
CciI TCATGA 1 cut(s) 553
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 1 cut(s) 504
Csp6I GTAC 4 cut(s) 185, 257, 464, 680
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 4 cut(s) 201, 412, 512, 554
CviJI RGCY 8 cut(s) 95, 137, 217, 410, 435, 458, 476, 643
CviKI_1 RGCY 8 cut(s) 95, 137, 217, 410, 435, 458, 476, 643
CviQI GTAC 4 cut(s) 185, 257, 464, 680
DdeI CTNAG 2 cut(s) 370, 485
DpnI GATC 2 cut(s) 270, 417
DpnII GATC 2 cut(s) 268, 415
DraI TTTAAA 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
Eco130I CCWWGG 1 cut(s) 411
Eco57I CTGAAG 2 cut(s) 141, 426
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 2 cut(s) 40, 430
EcoT14I CCWWGG 1 cut(s) 411
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 4 cut(s) 204, 415, 515, 557
FaiI YATR 9 cut(s) 23, 74, 202, 342, 413, 509, 513, 555, 585
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 2 cut(s) 502, 708
FatI CATG 4 cut(s) 200, 411, 511, 553
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 1 cut(s) 588
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 528
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 435
HapII CCGG 1 cut(s) 53
HgaI GACGC 1 cut(s) 504
Hin1II CATG 4 cut(s) 204, 415, 515, 557
HinfI GANTC 2 cut(s) 425, 487
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 263, 301
Hpy166II GTNNAC 2 cut(s) 257, 305
Hpy188I TCNGA 6 cut(s) 108, 118, 406, 424, 575, 718
Hpy188III TCNNGA 3 cut(s) 53, 350, 554
Hpy8I GTNNAC 2 cut(s) 257, 305
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 530, 625
HpyCH4III ACNGT 4 cut(s) 189, 544, 639, 654
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 4 cut(s) 305, 443, 482, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 234
HpyF3I CTNAG 2 cut(s) 370, 485
HpySE526I ACGT 1 cut(s) 678
Hsp92II CATG 4 cut(s) 204, 415, 515, 557
Kpn2I TCCGGA 1 cut(s) 52
Kzo9I GATC 2 cut(s) 268, 415
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 1 cut(s) 566
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 2 cut(s) 14, 645
MalI GATC 2 cut(s) 270, 417
MboI GATC 2 cut(s) 268, 415
MboII GAAGA 7 cut(s) 147, 317, 482, 610, 613, 640, 680
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 7 cut(s) 58, 85, 292, 385, 469, 604, 701
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 1 cut(s) 496
MmeI TCCRAC 1 cut(s) 731
MnlI CCTC 8 cut(s) 73, 78, 85, 127, 158, 541, 557, 658
Mox20I TGGCCA 1 cut(s) 435
Mph1103I ATGCAT 1 cut(s) 513
MroI TCCGGA 1 cut(s) 52
MscI TGGCCA 1 cut(s) 435
MseI TTAA 3 cut(s) 33, 261, 468
MslI CAYNNNNRTG 2 cut(s) 223, 276
Msp20I TGGCCA 1 cut(s) 435
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 2 cut(s) 42, 432
MvaI CCWGG 2 cut(s) 42, 432
MwoI GCNNNNNNNGC 2 cut(s) 210, 234
NcoI CCATGG 1 cut(s) 411
NdeII GATC 2 cut(s) 268, 415
NlaIII CATG 4 cut(s) 204, 415, 515, 557
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 1 cut(s) 515
OliI CACNNNNGTG 1 cut(s) 276
PaeI GCATGC 1 cut(s) 515
PagI TCATGA 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 425
PflFI GACNNNGTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 495
PpsI GAGTC 1 cut(s) 495
Psp6I CCWGG 2 cut(s) 40, 430
PspGI CCWGG 2 cut(s) 40, 430
PstNI CAGNNNCTG 1 cut(s) 722
PsyI GACNNNGTC 1 cut(s) 112
RsaI GTAC 4 cut(s) 186, 258, 465, 681
RsaNI GTAC 4 cut(s) 185, 257, 464, 680
RseI CAYNNNNRTG 2 cut(s) 223, 276
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 33, 261, 468
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 268, 415
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 2 cut(s) 42, 432
SduI GDGCHC 1 cut(s) 307
SetI ASST 7 cut(s) 70, 163, 371, 552, 618, 681, 685
SfaNI GCATC 1 cut(s) 215
SfcI CTRYAG 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 223, 276
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SphI GCATGC 1 cut(s) 515
Sse9I AATT 7 cut(s) 58, 85, 292, 385, 469, 604, 701
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 40, 430
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 4 cut(s) 189, 544, 639, 654
TaiI ACGT 1 cut(s) 681
TaqI TCGA 2 cut(s) 126, 393
TasI AATT 7 cut(s) 58, 85, 292, 385, 469, 604, 701
TatI WGTACW 3 cut(s) 184, 256, 463
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 33, 261, 468
Tru9I TTAA 3 cut(s) 33, 261, 468
TscAI CASTG 3 cut(s) 489, 642, 657
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 542, 570
TspRI CASTG 3 cut(s) 489, 642, 657
Tth111I GACNNNGTC 1 cut(s) 112
Vha464I CTTAAG 1 cut(s) 260
VneI GTGCAC 1 cut(s) 303
XapI RAATTY 4 cut(s) 85, 385, 604, 701
XceI RCATGY 1 cut(s) 515
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.