MD01G1087100.v1.1

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0004169
Physical Location & Seq
Forward (+)
19634599 .. 19638609
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1087100.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGAGATAAACATGTTCAGGCTCTGCTCCGGCCTCAAAGTCATCGGTTACTTCATGATCCTCCTCGTCGCCGCCATCATCTCCGTCTCCTACTACGCCATCGTCGTCGTCACTTGGGGCCCCGAGCTGCTCCGCGGCGGGGTCCACTCGTTTCTAGCTTTCTTCATCATCGTAATGTTCCATATTCTGCTTGTAATGTTACTGTGGAGTTACTTTATGGTAGTCTTTAAAGATCCTGGTTCTGTTCCGGAAAATTGGAAACCTCTAATAGAGGAGGAAAACTTAGAGGCTGGTAGTTCTCTGACTTTGTCAGAAAATATCGAACCTGAGGCATTCACTTCAACACAATCTTCAGATGGACGAGAAAGAAGACCACAAGTAGGGTATTGTAGTCGATGCCAAAATGGCAAGCCACCACGATGCCATCATTGCTCTGTCTGCCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGTGCACGCAACTACAAGTTTTTTCTTCTTTTCTTGCTTTATACATTTCTGGAGACAACAATGGATACCTTAGTTTTGCTGCCAAATTTTATCGATTTCTTCTCTGAAGCCACGGATCATTCTGAATCTCCTGGAAATCTTGCAGTCATTTTTTTGACATTTGTGCTTAATTTAGCCTTTGCACTGAGTCTTCTTTGTTTTGTGGTTATGCATGCGTCCCTTCTGTCAAGCAACACTACTACGGTTGAGGTTCATGAAAAGAGAGGAGCAATCAGATGGAAGTACGACTTGGGCAGGAAGAAGAATTTTGAGCAGGTTTTCGGCACGAAGAAGGCACTGTGGCTCTTACCACTGTTCTCAAAAGAGGATTTAGACAACGTACCTGCCCTTCGGGGACTGGAGTTTCCGACACTTTCAGATACTGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

309

Amino Acids

35.02

Weight (kDa)

6.14

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 129 - 251 1.7e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 799, 886
AccII CGCG 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 4 cut(s) 72, 133, 135, 138
AclWI GGATC 4 cut(s) 52, 227, 471, 618
AcsI RAATTY 2 cut(s) 580, 799
AcuI CTGAAG 2 cut(s) 336, 621
AfaI GTAC 3 cut(s) 453, 779, 876
AfiI CCNNNNNNNGG 2 cut(s) 139, 380
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 2 cut(s) 235, 625
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 2 cut(s) 127, 158
AluI AGCT 2 cut(s) 127, 158
Alw21I GWGCWC 1 cut(s) 502
Alw26I GTCTC 2 cut(s) 91, 542
Alw44I GTGCAC 1 cut(s) 498
AlwI GGATC 4 cut(s) 52, 227, 471, 618
AlwNI CAGNNNCTG 2 cut(s) 24, 917
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 2 cut(s) 31, 118
ApaI GGGCCC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 498
ApeKI GCWGC 2 cut(s) 127, 574
ApoI RAATTY 2 cut(s) 580, 799
AspS9I GGNCC 3 cut(s) 118, 119, 142
AsuHPI GGTGA 2 cut(s) 458, 496
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 327
BaeGI GKGCMC 2 cut(s) 122, 502
BaeI ACNNNNGTAYC 2 cut(s) 552, 585
BanII GRGCYC 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 867, 899
BbsI GAAGAC 2 cut(s) 376, 677
Bbv12I GWGCWC 1 cut(s) 502
BbvI GCAGC 2 cut(s) 114, 561
BccI CCATC 6 cut(s) 83, 107, 350, 432, 454, 765
BciT130I CCWGG 2 cut(s) 237, 627
BciVI GTATCC 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 91, 542
BfaI CTAG 1 cut(s) 155
BfrI CTTAAG 1 cut(s) 455
BfuAI ACCTGC 2 cut(s) 799, 886
BfuI GTATCC 1 cut(s) 553
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 4 cut(s) 72, 128, 136, 575
BlsI GCNGC 4 cut(s) 73, 129, 137, 576
Bme1390I CCNGG 2 cut(s) 237, 627
Bme18I GGWCC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 3 cut(s) 118, 119, 142
BmiI GGNNCC 4 cut(s) 119, 120, 121, 143
BmrFI CCNGG 2 cut(s) 237, 627
BmsI GCATC 2 cut(s) 386, 410
BpiI GAAGAC 2 cut(s) 376, 677
BpmI CTGGAG 2 cut(s) 566, 914
Bsa29I ATCGAT 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 133, 606
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 380
Bse1I ACTGG 1 cut(s) 897
Bse21I CCTNAGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 427
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 237, 627
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 133, 606
BseLI CCNNNNNNNGG 2 cut(s) 139, 380
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 3 cut(s) 318, 671, 909
BseNI ACTGG 1 cut(s) 897
BseRI GAGGAG 3 cut(s) 53, 287, 774
BseSI GKGCMC 2 cut(s) 122, 502
BseXI GCAGC 2 cut(s) 114, 561
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 2 cut(s) 33, 120
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 502
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 30, 248
BslFI GGGAC 2 cut(s) 697, 903
BslI CCNNNNNNNGG 2 cut(s) 139, 380
BsmAI GTCTC 2 cut(s) 91, 542
BsmBI CGTCTC 1 cut(s) 91
BsmFI GGGAC 2 cut(s) 697, 903
BsmI GAATGC 1 cut(s) 332
BsnI GGCC 2 cut(s) 33, 120
BsoBI CYCGRG 1 cut(s) 122
Bsp120I GGGCCC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 122, 502
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 4 cut(s) 57, 232, 463, 610
BspACI CCGC 4 cut(s) 72, 133, 135, 138
BspANI GGCC 2 cut(s) 33, 120
BspCNI CTCAG 3 cut(s) 319, 672, 910
BspDI ATCGAT 1 cut(s) 588
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 2 cut(s) 54, 748
BspLI GGNNCC 4 cut(s) 119, 120, 121, 143
BspMI ACCTGC 2 cut(s) 799, 886
BspPI GGATC 4 cut(s) 52, 227, 471, 618
BspTI CTTAAG 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 1 cut(s) 897
BssECI CCNNGG 2 cut(s) 133, 606
BssMI GATC 4 cut(s) 57, 232, 463, 610
Bst2UI CCWGG 2 cut(s) 237, 627
Bst4CI ACNGT 4 cut(s) 204, 739, 834, 849
BstAFI CTTAAG 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 410, 502, 708
BstDEI CTNAG 5 cut(s) 283, 327, 565, 680, 918
BstDSI CCRYGG 2 cut(s) 133, 606
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 4 cut(s) 60, 235, 466, 613
BstMAI GTCTC 2 cut(s) 91, 542
BstMBI GATC 4 cut(s) 57, 232, 463, 610
BstMWI GCNNNNNNNGC 3 cut(s) 405, 429, 438
BstNI CCWGG 2 cut(s) 237, 627
BstNSI RCATGY 2 cut(s) 16, 710
BstSCI CCNGG 2 cut(s) 235, 625
BstSLI GKGCMC 2 cut(s) 122, 502
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 114, 561
BstV2I GAAGAC 2 cut(s) 376, 677
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 327
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 2 cut(s) 33, 120
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 2 cut(s) 133, 606
BtsIMutI CAGTG 3 cut(s) 677, 830, 845
BveI ACCTGC 2 cut(s) 799, 886
Cac8I GCNNGC 3 cut(s) 410, 502, 708
CaiI CAGNNNCTG 2 cut(s) 24, 917
CciI TCATGA 2 cut(s) 54, 748
Cfr13I GGNCC 3 cut(s) 118, 119, 142
Cfr42I CCGCGG 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 699
Csp6I GTAC 3 cut(s) 452, 778, 875
CviAII CATG 4 cut(s) 13, 55, 707, 749
CviQI GTAC 3 cut(s) 452, 778, 875
DdeI CTNAG 5 cut(s) 283, 327, 565, 680, 918
DpnI GATC 4 cut(s) 59, 234, 465, 612
DpnII GATC 4 cut(s) 57, 232, 463, 610
DraI TTTAAA 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 336, 621
Eco81I CCTNAGG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 122
EcoO109I RGGNCCY 2 cut(s) 118, 119
EcoRII CCWGG 2 cut(s) 235, 625
EcoT22I ATGCAT 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 122
Esp3I CGTCTC 1 cut(s) 91
FaeI CATG 4 cut(s) 16, 58, 710, 752
FaiI YATR 8 cut(s) 14, 56, 183, 218, 537, 704, 708, 750
FalI AAGNNNNNCTT 2 cut(s) 767, 799
FaqI GGGAC 2 cut(s) 697, 903
FatI CATG 4 cut(s) 12, 54, 706, 748
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 4 cut(s) 72, 128, 136, 575
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 72, 128, 136, 575
FspBI CTAG 1 cut(s) 155
GluI GCNGC 4 cut(s) 72, 128, 136, 575
GsuI CTGGAG 2 cut(s) 566, 914
HaeIII GGCC 2 cut(s) 33, 120
HapII CCGG 2 cut(s) 30, 248
HgaI GACGC 1 cut(s) 699
Hin1II CATG 4 cut(s) 16, 58, 710, 752
HinfI GANTC 2 cut(s) 620, 682
HpaII CCGG 2 cut(s) 30, 248
HphI GGTGA 2 cut(s) 458, 496
Hpy166II GTNNAC 3 cut(s) 145, 452, 500
Hpy188I TCNGA 8 cut(s) 303, 313, 355, 601, 619, 770, 903, 913
Hpy188III TCNNGA 4 cut(s) 55, 248, 545, 749
Hpy8I GTNNAC 3 cut(s) 145, 452, 500
Hpy99I CGWCG 3 cut(s) 71, 107, 110
HpyAV CCTTC 3 cut(s) 725, 820, 893
HpyCH4III ACNGT 4 cut(s) 204, 739, 834, 849
HpyCH4IV ACGT 1 cut(s) 873
HpyCH4V TGCA 4 cut(s) 500, 638, 677, 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 405, 429, 438
HpyF3I CTNAG 5 cut(s) 283, 327, 565, 680, 918
HpySE526I ACGT 1 cut(s) 873
Hsp92II CATG 4 cut(s) 16, 58, 710, 752
Kpn2I TCCGGA 1 cut(s) 247
KspI CCGCGG 1 cut(s) 136
Kzo9I GATC 4 cut(s) 57, 232, 463, 610
LmnI GCTCC 3 cut(s) 32, 135, 761
Lsp1109I GCAGC 2 cut(s) 114, 561
LweI GCATC 2 cut(s) 386, 410
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 873
MaeIII GTNAC 4 cut(s) 47, 109, 198, 209
MalI GATC 4 cut(s) 59, 234, 465, 612
MboI GATC 4 cut(s) 57, 232, 463, 610
MboII GAAGA 9 cut(s) 154, 342, 381, 512, 586, 677, 805, 808, 835
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 122, 502
MluCI AATT 5 cut(s) 253, 487, 580, 664, 799
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 1 cut(s) 926
Mph1103I ATGCAT 1 cut(s) 708
MroI TCCGGA 1 cut(s) 247
MseI TTAA 3 cut(s) 228, 456, 663
MslI CAYNNNNRTG 3 cut(s) 173, 418, 471
MspA1I CMGCKG 1 cut(s) 135
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 2 cut(s) 30, 248
MspR9I CCNGG 2 cut(s) 237, 627
Mva1269I GAATGC 1 cut(s) 332
MvaI CCWGG 2 cut(s) 237, 627
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 3 cut(s) 405, 429, 438
NdeII GATC 4 cut(s) 57, 232, 463, 610
NlaIII CATG 4 cut(s) 16, 58, 710, 752
NlaIV GGNNCC 4 cut(s) 119, 120, 121, 143
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 708
NspI RCATGY 2 cut(s) 16, 710
OliI CACNNNNGTG 1 cut(s) 471
PaeI GCATGC 1 cut(s) 710
PagI TCATGA 2 cut(s) 54, 748
PciI ACATGT 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 332
PfeI GAWTC 1 cut(s) 620
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 625
PkrI GCNGC 4 cut(s) 73, 129, 137, 576
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PscI ACATGT 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 235, 625
PspGI CCWGG 2 cut(s) 235, 625
PspN4I GGNNCC 4 cut(s) 119, 120, 121, 143
PspOMI GGGCCC 1 cut(s) 118
PspPI GGNCC 3 cut(s) 118, 119, 142
PstNI CAGNNNCTG 2 cut(s) 24, 917
PsuI RGATCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 3 cut(s) 453, 779, 876
RsaNI GTAC 3 cut(s) 452, 778, 875
RseI CAYNNNNRTG 3 cut(s) 173, 418, 471
SacII CCGCGG 1 cut(s) 136
SaqAI TTAA 3 cut(s) 228, 456, 663
SatI GCNGC 4 cut(s) 72, 128, 136, 575
Sau3AI GATC 4 cut(s) 57, 232, 463, 610
Sau96I GGNCC 3 cut(s) 118, 119, 142
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 2 cut(s) 237, 627
SduI GDGCHC 2 cut(s) 122, 502
SetI ASST 9 cut(s) 129, 160, 265, 328, 566, 747, 813, 876, 880
SfaNI GCATC 2 cut(s) 386, 410
Sfr303I CCGCGG 1 cut(s) 136
SgrBI CCGCGG 1 cut(s) 136
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 3 cut(s) 173, 418, 471
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SphI GCATGC 1 cut(s) 710
Sse9I AATT 5 cut(s) 253, 487, 580, 664, 799
SsiI CCGC 4 cut(s) 72, 133, 135, 138
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 235, 625
TaaI ACNGT 4 cut(s) 204, 739, 834, 849
TaiI ACGT 1 cut(s) 876
TaqI TCGA 3 cut(s) 321, 394, 588
TasI AATT 5 cut(s) 253, 487, 580, 664, 799
TatI WGTACW 1 cut(s) 451
TauI GCSGC 2 cut(s) 74, 138
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 3 cut(s) 228, 456, 663
Tru9I TTAA 3 cut(s) 228, 456, 663
TscAI CASTG 3 cut(s) 684, 837, 852
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 2 cut(s) 127, 574
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 4 cut(s) 43, 154, 737, 765
TspGWI ACGGA 2 cut(s) 73, 623
TspRI CASTG 3 cut(s) 684, 837, 852
Tth111I GACNNNGTC 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 455
VneI GTGCAC 1 cut(s) 498
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 2 cut(s) 580, 799
XceI RCATGY 2 cut(s) 16, 710
XspI CTAG 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.