Rh1DG289000

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004169
Physical Location & Seq
Forward (+)
51212787 .. 51217493
4707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG289000.1

Sequence Viewer

Length: 783 bp
ATGGAGATTAACCTTTTCCGGCTATGCTCCGGCCTCAAAGTCATCGGCTACTTCATGATCTTATTGGTCGCTGCCATCGTTGCTGTTTCCTACTACGCCGTCGTCGTGCTGACGTGGGGACCCGAGCTGCGAACCGGTGGCCTCCACTCTTTCTTGGCCATCTCCATTATCGTTCTCTTCCATTTTCTGCTTATAATGTTGTTGTGGTGTTACTTTATGGTAGTCTTTAGAGACCCTGGTTCTGTTCCGGAAAATTGGAAACCTCGTACACAGGAGGAAATTTTGGAGGCTGGTAGTTCTCTAACTTCGACAGAAATCACAGCACCCGAGGTTTTCAATTCCACGCAGTCTACAGATGGACAAGAAAGAAGACCAGAAGTAGGCTATTGTAGTCGGTGCCAAAATGCCAAGCCACCACGATGCCATCATTGCTCTGTGTGTCAAAGATGTGTACTTAAGATGGATCACCATTGTGTTTGGGTGGTGAATTGTGTTGGTGCCACCAACTACAAGTCTTTTCTGCTTTTCTTGCTTTATACATTTTTGGAGACGACAATGGACACCTTAGTTTTGCTGCCGAATTTCGTCAATTTTTTTTCTGAAGCCAAGAGTCATTCCACATCTCCTGGCAATCTAGCAGTTGTTTTTGTGACTTTTGTGCTTAATTTGGCCTTCTCATTGAGTCTTCTCTGTTTCGTGGTTATGCACATATCCCTTTTGTCAAGCAATACCACTTCAGTAGAGGTAGTAAACTCAAGTGCTACTTTTGTTTATCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

260

Amino Acids

29.14

Weight (kDa)

6.43

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 129 - 252 3.8e-35 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccB1I GGYRCC 2 cut(s) 396, 497
AccI GTMKAC 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 2 cut(s) 279, 580
AcuI CTGAAG 2 cut(s) 621, 720
AfaI GTAC 2 cut(s) 268, 453
AfiI CCNNNNNNNGG 1 cut(s) 380
AflII CTTAAG 1 cut(s) 455
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 114
AjnI CCWGG 2 cut(s) 235, 625
AleI CACNNNNGTG 1 cut(s) 471
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 2 cut(s) 225, 542
AlwI GGATC 1 cut(s) 471
Ama87I CYCGRG 2 cut(s) 122, 326
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 4 cut(s) 31, 139, 156, 669
ApeKI GCWGC 3 cut(s) 71, 127, 574
ApoI RAATTY 2 cut(s) 279, 580
AsiGI ACCGGT 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 458, 496
AvaI CYCGRG 2 cut(s) 122, 326
AvaII GGWCC 1 cut(s) 119
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 2 cut(s) 396, 497
BbsI GAAGAC 2 cut(s) 376, 677
BbvI GCAGC 3 cut(s) 58, 114, 561
BccI CCATC 5 cut(s) 83, 167, 350, 432, 454
BceAI ACGGC 1 cut(s) 83
BciT130I CCWGG 2 cut(s) 237, 627
BcoDI GTCTC 2 cut(s) 225, 542
BfaI CTAG 1 cut(s) 635
BfmI CTRYAG 1 cut(s) 351
BfrI CTTAAG 1 cut(s) 455
BisI GCNGC 3 cut(s) 72, 128, 575
BlsI GCNGC 3 cut(s) 73, 129, 576
Bme1390I CCNGG 2 cut(s) 237, 627
Bme18I GGWCC 1 cut(s) 119
BmeT110I CYCGRG 2 cut(s) 122, 326
BmgBI CACGTC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 4 cut(s) 120, 121, 398, 499
BmrFI CCNGG 2 cut(s) 237, 627
BmsI GCATC 1 cut(s) 410
BpiI GAAGAC 2 cut(s) 376, 677
BpuEI CTTGAG 1 cut(s) 739
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 235, 327
BsaWI WCCGGW 2 cut(s) 134, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 427
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 2 cut(s) 237, 627
BseDI CCNNGG 2 cut(s) 235, 327
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 427
BseXI GCAGC 3 cut(s) 58, 114, 561
BshFI GGCC 4 cut(s) 33, 141, 158, 671
BshNI GGYRCC 2 cut(s) 396, 497
BshTI ACCGGT 1 cut(s) 134
BsiHKCI CYCGRG 2 cut(s) 122, 326
BsiSI CCGG 4 cut(s) 19, 30, 135, 248
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 225, 542
BsmBI CGTCTC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 4 cut(s) 33, 141, 158, 671
Bso31I GGTCTC 1 cut(s) 225
BsoBI CYCGRG 2 cut(s) 122, 326
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 57, 463
BspANI GGCC 4 cut(s) 33, 141, 158, 671
BspEI TCCGGA 1 cut(s) 247
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 4 cut(s) 120, 121, 398, 499
BspPI GGATC 1 cut(s) 471
BspT107I GGYRCC 2 cut(s) 396, 497
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 427
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 235, 327
BssMI GATC 2 cut(s) 57, 463
Bst2UI CCWGG 2 cut(s) 237, 627
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 565
BstKTI GATC 2 cut(s) 60, 466
BstMAI GTCTC 2 cut(s) 225, 542
BstMBI GATC 2 cut(s) 57, 463
BstMWI GCNNNNNNNGC 3 cut(s) 80, 429, 529
BstNI CCWGG 2 cut(s) 237, 627
BstSCI CCNGG 2 cut(s) 235, 625
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 58, 114, 561
BstV2I GAAGAC 2 cut(s) 376, 677
BsuRI GGCC 4 cut(s) 33, 141, 158, 671
BtrI CACGTC 1 cut(s) 114
CciI TCATGA 1 cut(s) 54
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 267, 452
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 1 cut(s) 55
CviQI GTAC 2 cut(s) 267, 452
DdeI CTNAG 1 cut(s) 565
DpnI GATC 2 cut(s) 59, 465
DpnII GATC 2 cut(s) 57, 463
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco31I GGTCTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 119
Eco57I CTGAAG 2 cut(s) 621, 720
Eco88I CYCGRG 2 cut(s) 122, 326
EcoO109I RGGNCCY 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 235, 625
Esp3I CGTCTC 1 cut(s) 542
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 25, 56, 194, 218, 537, 704, 710
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 54
FblI GTMKAC 1 cut(s) 350
Fnu4HI GCNGC 3 cut(s) 72, 128, 575
Fsp4HI GCNGC 3 cut(s) 72, 128, 575
FspBI CTAG 1 cut(s) 635
GluI GCNGC 3 cut(s) 72, 128, 575
HaeIII GGCC 4 cut(s) 33, 141, 158, 671
HapII CCGG 4 cut(s) 19, 30, 135, 248
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 610, 682
HpaII CCGG 4 cut(s) 19, 30, 135, 248
HphI GGTGA 2 cut(s) 458, 496
Hpy166II GTNNAC 4 cut(s) 269, 351, 452, 751
Hpy188I TCNGA 1 cut(s) 601
Hpy188III TCNNGA 2 cut(s) 55, 248
Hpy8I GTNNAC 4 cut(s) 269, 351, 452, 751
Hpy99I CGWCG 2 cut(s) 104, 107
HpyAV CCTTC 1 cut(s) 682
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 706
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 429, 529
HpyF3I CTNAG 1 cut(s) 565
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 1 cut(s) 58
KflI GGGWCCC 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 57, 463
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 3 cut(s) 58, 114, 561
LweI GCATC 1 cut(s) 410
MaeI CTAG 1 cut(s) 635
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 209, 649
MalI GATC 2 cut(s) 59, 465
MboI GATC 2 cut(s) 57, 463
MboII GAAGA 3 cut(s) 169, 381, 677
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 7 cut(s) 253, 279, 337, 487, 580, 589, 664
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 2 cut(s) 619, 691
MnlI CCTC 7 cut(s) 44, 152, 268, 273, 280, 322, 736
Mox20I TGGCCA 1 cut(s) 158
MroI TCCGGA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 9, 456, 663
MslI CAYNNNNRTG 2 cut(s) 418, 471
Msp20I TGGCCA 1 cut(s) 158
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 4 cut(s) 19, 30, 135, 248
MspR9I CCNGG 2 cut(s) 237, 627
MvaI CCWGG 2 cut(s) 237, 627
MwoI GCNNNNNNNGC 3 cut(s) 80, 429, 529
NdeII GATC 2 cut(s) 57, 463
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 4 cut(s) 120, 121, 398, 499
NmuCI GTSAC 1 cut(s) 649
OliI CACNNNNGTG 1 cut(s) 471
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 102
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 3 cut(s) 73, 129, 576
PleI GAGTC 2 cut(s) 618, 690
PpsI GAGTC 2 cut(s) 618, 690
PpuMI RGGWCCY 1 cut(s) 119
PsiI TTATAA 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 235, 625
PspGI CCWGG 2 cut(s) 235, 625
PspN4I GGNNCC 4 cut(s) 120, 121, 398, 499
PspPI GGNCC 1 cut(s) 119
PspPPI RGGWCCY 1 cut(s) 119
RsaI GTAC 2 cut(s) 268, 453
RsaNI GTAC 2 cut(s) 267, 452
RseI CAYNNNNRTG 2 cut(s) 418, 471
SaqAI TTAA 3 cut(s) 9, 456, 663
SatI GCNGC 3 cut(s) 72, 128, 575
Sau3AI GATC 2 cut(s) 57, 463
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 2 cut(s) 619, 691
ScrFI CCNGG 2 cut(s) 237, 627
SetI ASST 7 cut(s) 15, 116, 129, 265, 333, 566, 747
SfaNI GCATC 1 cut(s) 410
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 418, 471
SmlI CTYRAG 2 cut(s) 455, 754
SmoI CTYRAG 2 cut(s) 455, 754
Sse9I AATT 7 cut(s) 253, 279, 337, 487, 580, 589, 664
SspMI CTAG 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 235, 625
TaiI ACGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 308
TasI AATT 7 cut(s) 253, 279, 337, 487, 580, 589, 664
TatI WGTACW 1 cut(s) 451
Tru1I TTAA 3 cut(s) 9, 456, 663
Tru9I TTAA 3 cut(s) 9, 456, 663
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 3 cut(s) 71, 127, 574
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 119
XapI RAATTY 2 cut(s) 279, 580
XmiI GTMKAC 1 cut(s) 350
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.