AT4G00840

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004169
Physical Location & Seq
Reverse (-)
355211 .. 357296
2086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G00840.1

Sequence Viewer

Length: 876 bp
ATGAACCTTTTCCGGTTCTGCTCCGGTCTGAAAGTCCTCGGCTATTTCATGATCCTTCTTGTCGTCGCCGTCGTTGGTGTATCTTACTACGCCGTCGTAGTTAGCACATGGTGGCCGATCTTGATCCGCGGAGACCATGGAGCTTTATCCGCCCTCGCTGCCTTAATCATCTTTGTTTTCCATTTCCTGCTGATAATGCTGTTGTGGAGCTACTTCACAACAGTTTTTACAGACCCAGGTTCTGTTCCTGAGCATTTCAGAAGAGAAATGGGAGGTGGTGACAGTTTGGAGGCTGGTACTTCGACAGATCAAGGAGCTTTTGGCTCTTTAGGTTACTGTACCAAATGCCGGAATGTTAAGCCGCCTCGTTGCCATCATTGTTCTGTGTGTCAAAGATGTGTTCTTAAGATGGATCATCATTGTGTTTGGATTGTAAACTGTGTTGGAGCACGCAATTACAAGTTTTTCCTTCTCTTTCTGTTCTATACTTTTCTTGAGACAATGTTGGATGTTATTGTCTTGCTTCCTAGTTTCATTGAATTCTTCAGCCAAGCTATAAAGCATTCTTCTTCTCCGGGTAAACTGGCCTCTCTCGTTCTGGCATTCGTTCTTAACTTTGCGTTCGTTCTCAGCCTTCTTTGTTTCGTAGTCATGCATATTTCTCTTCTCTCATCCAACACTACTTCAGTTGAGGTTCATGAGAAAAATGGAGAAGTCAGATGGAAATATGACTTAGGAAAGAAGAAAAACTTCGAGCAGGTTTTTGGGAAGAAGAAGGCGTTTTGGCTCCTCCCATTGTACTCTAAAGACGATATCGATAACATAACTTCCCTTGAAGGCCTTGAATTTCCAACTTGTTCTGACATCGACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

291

Amino Acids

32.87

Weight (kDa)

7.98

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 110 - 234 2.3e-36 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 748
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 127, 129, 150, 362
AclWI GGATC 3 cut(s) 46, 118, 420
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 539, 845
AcuI CTGAAG 2 cut(s) 529, 669
AdeI CACNNNGTG 1 cut(s) 111
AfaI GTAC 3 cut(s) 298, 340, 800
AfiI CCNNNNNNNGG 1 cut(s) 348
AflII CTTAAG 1 cut(s) 404
AgsI TTSAA 3 cut(s) 539, 836, 845
AjnI CCWGG 1 cut(s) 235
AluBI AGCT 4 cut(s) 143, 210, 317, 554
AluI AGCT 4 cut(s) 143, 210, 317, 554
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 126, 491
AlwI GGATC 3 cut(s) 46, 118, 420
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 3 cut(s) 113, 585, 838
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 539, 845
Asp700I GAANNNNTTC 2 cut(s) 8, 749
AsuC2I CCSGG 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 1 cut(s) 145
BccI CCATC 3 cut(s) 381, 403, 714
BceAI ACGGC 2 cut(s) 53, 77
BciT130I CCWGG 1 cut(s) 237
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 2 cut(s) 126, 491
BfaI CTAG 1 cut(s) 528
BfrI CTTAAG 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 748
BisI GCNGC 2 cut(s) 159, 362
BlsI GCNGC 2 cut(s) 160, 363
Bme1390I CCNGG 2 cut(s) 237, 576
BmiI GGNNCC 1 cut(s) 788
BmrFI CCNGG 2 cut(s) 237, 576
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 576
Bsa29I ATCGAT 1 cut(s) 816
BsaBI GATNNNNATC 1 cut(s) 122
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 37, 127, 136, 235
BsaWI WCCGGW 2 cut(s) 12, 23
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 588
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 816
BseDI CCNNGG 4 cut(s) 37, 127, 136, 235
BseGI GGATG 2 cut(s) 514, 671
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 240, 643
BseNI ACTGG 1 cut(s) 588
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 115, 587, 840
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 451
BsiSI CCGG 4 cut(s) 13, 24, 349, 575
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 126, 491
BsmI GAATGC 2 cut(s) 562, 602
BsnI GGCC 3 cut(s) 115, 587, 840
Bso31I GGTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 5 cut(s) 51, 117, 123, 307, 412
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 4 cut(s) 127, 129, 150, 362
BspANI GGCC 3 cut(s) 115, 587, 840
BspCNI CTCAG 2 cut(s) 241, 642
BspDI ATCGAT 1 cut(s) 816
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 2 cut(s) 48, 697
BspLI GGNNCC 1 cut(s) 788
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 3 cut(s) 46, 118, 420
BspTI CTTAAG 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 588
BssECI CCNNGG 4 cut(s) 37, 127, 136, 235
BssMI GATC 5 cut(s) 51, 117, 123, 307, 412
BssT1I CCWWGG 1 cut(s) 136
Bst2UI CCWGG 1 cut(s) 237
Bst4CI ACNGT 4 cut(s) 223, 284, 338, 440
Bst6I CTCTTC 2 cut(s) 256, 669
BstAFI CTTAAG 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 3 cut(s) 249, 629, 733
BstDSI CCRYGG 2 cut(s) 127, 136
BstF5I GGATG 2 cut(s) 514, 671
BstFNI CGCG 1 cut(s) 129
BstKTI GATC 5 cut(s) 54, 120, 126, 310, 415
BstMAI GTCTC 2 cut(s) 126, 491
BstMBI GATC 5 cut(s) 51, 117, 123, 307, 412
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 196
BstNI CCWGG 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 235, 574
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 816
BsuRI GGCC 3 cut(s) 115, 587, 840
BsuTUI ATCGAT 1 cut(s) 816
BtgI CCRYGG 2 cut(s) 127, 136
BtsCI GGATG 2 cut(s) 514, 671
BveI ACCTGC 1 cut(s) 748
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 2 cut(s) 48, 697
Cfr42I CCGCGG 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 816
Csp6I GTAC 3 cut(s) 297, 339, 799
CviAII CATG 5 cut(s) 49, 108, 137, 652, 698
CviQI GTAC 3 cut(s) 297, 339, 799
DdeI CTNAG 3 cut(s) 249, 629, 733
DpnI GATC 5 cut(s) 53, 119, 125, 309, 414
DpnII GATC 5 cut(s) 51, 117, 123, 307, 412
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 256, 669
EarI CTCTTC 2 cut(s) 256, 669
EciI GGCGGA 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 136
Eco147I AGGCCT 1 cut(s) 840
Eco31I GGTCTC 1 cut(s) 126
Eco32I GATATC 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 529, 669
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 5 cut(s) 52, 111, 140, 655, 701
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FatI CATG 5 cut(s) 48, 107, 136, 651, 697
Fnu4HI GCNGC 2 cut(s) 159, 362
FokI GGATG 2 cut(s) 521, 658
Fsp4HI GCNGC 2 cut(s) 159, 362
FspBI CTAG 1 cut(s) 528
GluI GCNGC 2 cut(s) 159, 362
HaeIII GGCC 3 cut(s) 115, 587, 840
HapII CCGG 4 cut(s) 13, 24, 349, 575
Hin1II CATG 5 cut(s) 52, 111, 140, 655, 701
HpaII CCGG 4 cut(s) 13, 24, 349, 575
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 436, 581
Hpy188I TCNGA 4 cut(s) 30, 260, 719, 862
Hpy188III TCNNGA 5 cut(s) 49, 121, 248, 494, 698
Hpy8I GTNNAC 2 cut(s) 436, 581
Hpy99I CGWCG 3 cut(s) 68, 74, 98
HpyAV CCTTC 5 cut(s) 65, 479, 644, 769, 830
HpyCH4III ACNGT 4 cut(s) 223, 284, 338, 440
HpyCH4V TGCA 1 cut(s) 655
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 196
HpyF3I CTNAG 3 cut(s) 249, 629, 733
Hsp92II CATG 5 cut(s) 52, 111, 140, 655, 701
KspI CCGCGG 1 cut(s) 130
Kzo9I GATC 5 cut(s) 51, 117, 123, 307, 412
LmnI GCTCC 6 cut(s) 26, 140, 207, 314, 446, 792
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 278, 332
MalI GATC 5 cut(s) 53, 119, 125, 309, 414
MboI GATC 5 cut(s) 51, 117, 123, 307, 412
MboII GAAGA 8 cut(s) 273, 535, 558, 561, 656, 754, 781, 784
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 3 cut(s) 454, 539, 845
MmeI TCCRAC 4 cut(s) 424, 486, 699, 875
MnlI CCTC 8 cut(s) 47, 164, 266, 283, 375, 598, 685, 800
Mph1103I ATGCAT 1 cut(s) 657
MroXI GAANNNNTTC 2 cut(s) 8, 749
MseI TTAA 4 cut(s) 164, 357, 405, 612
MslI CAYNNNNRTG 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 404
MspI CCGG 4 cut(s) 13, 24, 349, 575
MspR9I CCNGG 2 cut(s) 237, 576
Mva1269I GAATGC 2 cut(s) 562, 602
MvaI CCWGG 1 cut(s) 237
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 196
NciI CCSGG 1 cut(s) 576
NcoI CCATGG 1 cut(s) 136
NdeII GATC 5 cut(s) 51, 117, 123, 307, 412
NlaIII CATG 5 cut(s) 52, 111, 140, 655, 701
NlaIV GGNNCC 1 cut(s) 788
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 657
PagI TCATGA 2 cut(s) 48, 697
PceI AGGCCT 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 2 cut(s) 562, 602
PdmI GAANNNNTTC 2 cut(s) 8, 749
PkrI GCNGC 2 cut(s) 160, 363
Psp6I CCWGG 1 cut(s) 235
PspGI CCWGG 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 788
PstNI CAGNNNCTG 1 cut(s) 242
RsaI GTAC 3 cut(s) 298, 340, 800
RsaNI GTAC 3 cut(s) 297, 339, 799
RseI CAYNNNNRTG 1 cut(s) 420
SacII CCGCGG 1 cut(s) 130
SaqAI TTAA 4 cut(s) 164, 357, 405, 612
SatI GCNGC 2 cut(s) 159, 362
Sau3AI GATC 5 cut(s) 51, 117, 123, 307, 412
ScrFI CCNGG 2 cut(s) 237, 576
SduI GDGCHC 1 cut(s) 451
Sfr303I CCGCGG 1 cut(s) 130
SgrBI CCGCGG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 2 cut(s) 404, 494
SmoI CTYRAG 2 cut(s) 404, 494
Sse9I AATT 3 cut(s) 454, 539, 845
SseBI AGGCCT 1 cut(s) 840
SsiI CCGC 4 cut(s) 127, 129, 150, 362
SspMI CTAG 1 cut(s) 528
StuI AGGCCT 1 cut(s) 840
StyD4I CCNGG 2 cut(s) 235, 574
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 4 cut(s) 223, 284, 338, 440
TaqI TCGA 4 cut(s) 302, 753, 816, 867
TasI AATT 3 cut(s) 454, 539, 845
TatI WGTACW 1 cut(s) 798
TauI GCSGC 1 cut(s) 364
Tru1I TTAA 4 cut(s) 164, 357, 405, 612
Tru9I TTAA 4 cut(s) 164, 357, 405, 612
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 4 cut(s) 17, 37, 523, 686
Vha464I CTTAAG 1 cut(s) 404
XapI RAATTY 2 cut(s) 539, 845
XmnI GAANNNNTTC 2 cut(s) 8, 749
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.