MD01G1087200.v1.1

Putative AtpZ or ATP-synthase-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013713
Physical Location & Seq
Reverse (-)
19641844 .. 19644090
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1087200.v1.1.491

Sequence Viewer

Length: 306 bp
ATGGGATTGAACAAGGAAGACAAAGAAACAATAAGTTACTTGGAGCAACGAAGAATTGTGGAGACAAGAACAGCTTGCTTTTGGTCAGTTCTGGTGAGTGTGGTTGGAGGACTCATGTTAGGGTGGTGGGAGTATCAGTATCATCCTGCAAATAAGCAGCTGTGGATGGTGCCCTTTGGTCTCGTCCTATTTGCTACCCCAGCCATCGTTTGGTTCTCCGTCGTGGCCTCCGATATCTGTAATCCGAACAACCATTATGTTCTGAGGTTTGCATTAGCAAAAGTAGATATTGGTGCATCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_Z

Protein Analysis

102

Amino Acids

11.52

Weight (kDa)

6.71

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Z PF16594 25 - 77 2e-27 Putative AtpZ or ATP-synthase-associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 74, 160
AluI AGCT 2 cut(s) 74, 160
Alw26I GTCTC 2 cut(s) 56, 185
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 160, 212
BcoDI GTCTC 2 cut(s) 56, 185
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 210
BseGI GGATG 2 cut(s) 142, 171
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 56, 185
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 174
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 2 cut(s) 142, 171
BstMAI GTCTC 2 cut(s) 56, 185
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 142, 171
Cac8I GCNNGC 1 cut(s) 76
CviAII CATG 1 cut(s) 115
CviJI RGCY 4 cut(s) 74, 160, 203, 227
CviKI_1 RGCY 4 cut(s) 74, 160, 203, 227
DdeI CTNAG 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 235
EcoRV GATATC 1 cut(s) 235
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 258
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 2 cut(s) 129, 178
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
GsaI CCCAGC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 3 cut(s) 232, 246, 264
Hpy99I CGWCG 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 149, 272, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 1 cut(s) 118
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 3 cut(s) 77, 159, 213
Lsp1109I GCAGC 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 35
MboII GAAGA 2 cut(s) 29, 63
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 2 cut(s) 54, 300
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 101, 238, 258
MspA1I CMGCKG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 200
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 160
SatI GCNGC 1 cut(s) 158
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 174
SetI ASST 3 cut(s) 76, 162, 269
Sse9I AATT 2 cut(s) 54, 300
TasI AATT 2 cut(s) 54, 300
TseI GCWGC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.