Prupe.2G195800_v2.0.a1

Putative AtpZ or ATP-synthase-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013713
Physical Location & Seq
Reverse (-)
23336372 .. 23337592
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G195800.1

Sequence Viewer

Length: 339 bp
ATGGGATCGAACAAGGAAGAGAAAGATGCAAGTTACTTGGAACATGAAAGAGTTGTGAAGACTAGGAAAGCTTGCTTTTGGTCAATTTTGGTGAGTGTGGCAGGGGGGCTCATGTTAGGATGGTGGGAATATCAATATCATCCCACAAATAGGCAACTGTGGATGGTGCCCTTTGGTCTCATCCTTTTTGCTACCCCGGTCATTGTTTGGTTCTCTGTTATGGCCTCTGACATCTGTAATTTGAAGGATGATGATCATGTCACAAGGGTGAGTCAACTCAGTAACTCGGTTCCTGCCAAGAAAGATGGGCAATGGAGCAACCATGTGAATGATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_Z

Protein Analysis

113

Amino Acids

12.86

Weight (kDa)

6.39

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 166
AclWI GGATC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 244
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 103, 280
BaeGI GKGCMC 1 cut(s) 171
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 65
BccI CCATC 3 cut(s) 114, 157, 299
BclI TGATCA 1 cut(s) 253
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 168, 291
BmrFI CCNGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 252
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 317
Bse8I GATNNNNATC 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 5 cut(s) 125, 139, 168, 180, 253
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 171
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 166
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 111, 171
Bsp143I GATC 2 cut(s) 5, 253
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 168, 291
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 5, 253
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 5 cut(s) 125, 139, 168, 180, 253
BstKTI GATC 2 cut(s) 8, 256
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 5, 253
BstSCI CCNGG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 5 cut(s) 125, 139, 168, 180, 253
Cac8I GCNNGC 1 cut(s) 73
CviAII CATG 4 cut(s) 44, 112, 257, 323
CviJI RGCY 3 cut(s) 71, 109, 224
CviKI_1 RGCY 3 cut(s) 71, 109, 224
DdeI CTNAG 1 cut(s) 278
DpnI GATC 2 cut(s) 7, 255
DpnII GATC 2 cut(s) 5, 253
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 4 cut(s) 47, 115, 260, 326
FaiI YATR 6 cut(s) 45, 113, 221, 258, 324, 337
FatI CATG 4 cut(s) 43, 111, 256, 322
FbaI TGATCA 1 cut(s) 253
FokI GGATG 5 cut(s) 126, 132, 167, 175, 260
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 197
Hin1II CATG 4 cut(s) 47, 115, 260, 326
HincII GTYRAC 1 cut(s) 275
HindII GTYRAC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 103, 280
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 4 cut(s) 47, 115, 260, 326
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 5, 253
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 3 cut(s) 87, 210, 306
LweI GCATC 1 cut(s) 16
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 32, 259, 281
MalI GATC 2 cut(s) 7, 255
MboI GATC 2 cut(s) 5, 253
MboII GAAGA 2 cut(s) 29, 70
MhlI GDGCHC 2 cut(s) 111, 171
MluCI AATT 2 cut(s) 84, 238
MlyI GAGTC 1 cut(s) 280
MnlI CCTC 1 cut(s) 235
MslI CAYNNNNRTG 2 cut(s) 266, 327
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 197
NciI CCSGG 1 cut(s) 197
NdeII GATC 2 cut(s) 5, 253
NlaIII CATG 4 cut(s) 47, 115, 260, 326
NlaIV GGNNCC 2 cut(s) 168, 291
NmuCI GTSAC 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 266
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 168, 291
RseI CAYNNNNRTG 2 cut(s) 266, 327
Sau3AI GATC 2 cut(s) 5, 253
SchI GAGTC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 2 cut(s) 111, 171
SetI ASST 1 cut(s) 73
SfaNI GCATC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 266, 327
Sse9I AATT 2 cut(s) 84, 238
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 84, 238
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 60
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.