pycom01g11120

Putative AtpZ or ATP-synthase-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013713
Physical Location & Seq
Reverse (-)
12012587 .. 12012937
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g11120.1

Sequence Viewer

Length: 351 bp
ATGGGATTGAACGAGGAAGACAAAGAAACAATAAGTTACTTGGAACAACAAAGAATTGTGGAGACAAGAACAGCTTGCTTTTGGTCAGTTCTGGCGAGTGTGGCTGGAGGACTCATGTTAGGGTGGTGGGAGTATCAGTATCATCCTGCAAATAGGCAGCTGTGGATGGTGCCCTTTGGTCTCGTCCTATTTGCTACCCCAGCCATCGTTTGGTTTTCCGTCGTGGCCTCCGATATCTGTAATCCGAACGACCATTATGTTACGAGGGTGAATCAACCCGTTCACCTCAATGACTCGGTGGTTCCGGCCAAAAAAGATGAGCAATGGAGTAACCATGTGGATCATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_Z

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

5.14

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Z PF16594 25 - 77 4.9e-28 Putative AtpZ or ATP-synthase-associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccB7I CCANNNNNTGG 1 cut(s) 210
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 10
AluBI AGCT 2 cut(s) 74, 160
AluI AGCT 2 cut(s) 74, 160
Alw26I GTCTC 2 cut(s) 56, 185
AlwI GGATC 1 cut(s) 348
AoxI GGCC 2 cut(s) 225, 306
ApeKI GCWGC 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 275, 280
BaeGI GKGCMC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 160, 212
BcoDI GTCTC 2 cut(s) 56, 185
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 171, 303
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse3DI GCAATG 1 cut(s) 329
BseGI GGATG 2 cut(s) 142, 171
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 2 cut(s) 227, 308
BshNI GGYRCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 2 cut(s) 56, 185
BsnI GGCC 2 cut(s) 227, 308
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 340
BspANI GGCC 2 cut(s) 227, 308
BspLI GGNNCC 2 cut(s) 171, 303
BspPI GGATC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 169
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 329
BssMI GATC 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 76
BstF5I GGATG 2 cut(s) 142, 171
BstKTI GATC 1 cut(s) 343
BstMAI GTCTC 2 cut(s) 56, 185
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 101, 200
BstSLI GKGCMC 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 227, 308
BtsCI GGATG 2 cut(s) 142, 171
Cac8I GCNNGC 1 cut(s) 76
CviAII CATG 3 cut(s) 115, 335, 344
CviJI RGCY 6 cut(s) 74, 104, 160, 203, 227, 308
CviKI_1 RGCY 6 cut(s) 74, 104, 160, 203, 227, 308
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
EaeI YGGCCR 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 235
EcoRV GATATC 1 cut(s) 235
FaeI CATG 3 cut(s) 118, 338, 347
FaiI YATR 5 cut(s) 116, 258, 336, 345, 349
FalI AAGNNNNNCTT 2 cut(s) 58, 90
FatI CATG 3 cut(s) 114, 334, 343
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 2 cut(s) 129, 178
Fsp4HI GCNGC 1 cut(s) 158
GluI GCNGC 1 cut(s) 158
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 2 cut(s) 227, 308
HapII CCGG 1 cut(s) 305
Hin1II CATG 3 cut(s) 118, 338, 347
HinfI GANTC 3 cut(s) 111, 271, 293
HpaII CCGG 1 cut(s) 305
HphI GGTGA 2 cut(s) 275, 280
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 232, 246
Hpy8I GTNNAC 1 cut(s) 283
Hpy99I CGWCG 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 200
Hsp92II CATG 3 cut(s) 118, 338, 347
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 5 cut(s) 77, 90, 159, 213, 318
Lsp1109I GCAGC 1 cut(s) 169
MaeIII GTNAC 3 cut(s) 35, 259, 329
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 54
MlyI GAGTC 2 cut(s) 105, 287
MnlI CCTC 5 cut(s) 7, 101, 238, 258, 296
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 101, 200
NdeII GATC 1 cut(s) 340
NlaIII CATG 3 cut(s) 118, 338, 347
NlaIV GGNNCC 2 cut(s) 171, 303
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 1 cut(s) 271
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 2 cut(s) 105, 287
PpsI GAGTC 2 cut(s) 105, 287
PspFI CCCAGC 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 171, 303
PvuII CAGCTG 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 288
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 340
SchI GAGTC 2 cut(s) 105, 287
SduI GDGCHC 1 cut(s) 174
SetI ASST 3 cut(s) 76, 162, 288
SmiMI CAYNNNNRTG 1 cut(s) 288
Sse9I AATT 1 cut(s) 54
TasI AATT 1 cut(s) 54
TfiI GAWTC 1 cut(s) 271
TseI GCWGC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.