MD07G1157400.v1.1

Putative AtpZ or ATP-synthase-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013713
Physical Location & Seq
Reverse (-)
22880330 .. 22881264
935 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1157400.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGGATCGAAATCAAACAAGGAAGACAAAGATGCAATAAGTTACTTGGAGGAACCAAGAATTGTGGAGCTGAGAACAGCTTGCTTTTGGTCAGTTCTGGTGAGTGTGGCAGGAGCACTCATGTTAGGGTGGTGGGAGTACCAGTATCATCCTGCAAATAGGCAGCTGTGGATGGTGCCCTTCGGTCTCATCCTATTTGCTACCCCAGCCATCGTTTGGTTCTCAGTTGTGGCCTCCGATCTCTGTAACCAGAACGACGATCATGTCACAAGAGTGAGTCAACCGCTTCACCCGCTCAATGGCTCGGTGGTTCCGGCCAAAAAAGATGAGCAATGGGGTAACCATGTGGATCATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP-synt_Z

Protein Analysis

120

Amino Acids

13.5

Weight (kDa)

5.62

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_Z PF16594 27 - 79 3.7e-28 Putative AtpZ or ATP-synthase-associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 175
AccB7I CCANNNNNTGG 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 295
AciI CCGC 2 cut(s) 284, 293
AclWI GGATC 2 cut(s) 13, 357
AcoI YGGCCR 1 cut(s) 315
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 216, 299
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 3 cut(s) 70, 80, 166
AluI AGCT 3 cut(s) 70, 80, 166
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 13, 357
AoxI GGCC 2 cut(s) 231, 315
ApeKI GCWGC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 112, 281
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 175
BccI CCATC 2 cut(s) 166, 218
BcoDI GTCTC 1 cut(s) 191
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmiI GGNNCC 3 cut(s) 54, 177, 312
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 10
BsaI GGTCTC 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 299
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 10
BseGI GGATG 3 cut(s) 148, 177, 189
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 216, 299
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 2 cut(s) 62, 237
BseNI ACTGG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 205
BshFI GGCC 2 cut(s) 233, 317
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 216, 299
BsmAI GTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 233, 317
Bso31I GGTCTC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 118, 180
Bsp143I GATC 4 cut(s) 5, 238, 259, 349
BspACI CCGC 2 cut(s) 284, 293
BspANI GGCC 2 cut(s) 233, 317
BspCNI CTCAG 2 cut(s) 63, 236
BspLI GGNNCC 3 cut(s) 54, 177, 312
BspPI GGATC 2 cut(s) 13, 357
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 191
BsrBI CCGCTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 338
BsrI ACTGG 1 cut(s) 142
BssMI GATC 4 cut(s) 5, 238, 259, 349
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 71, 223
BstEII GGTNACC 1 cut(s) 338
BstF5I GGATG 3 cut(s) 148, 177, 189
BstKTI GATC 4 cut(s) 8, 241, 262, 352
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 4 cut(s) 5, 238, 259, 349
BstMWI GCNNNNNNNGC 2 cut(s) 206, 292
BstPI GGTNACC 1 cut(s) 338
BstSLI GKGCMC 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 2 cut(s) 233, 317
BtsCI GGATG 3 cut(s) 148, 177, 189
Cac8I GCNNGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 139
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 4 cut(s) 121, 263, 344, 353
CviJI RGCY 7 cut(s) 70, 80, 166, 209, 233, 303, 317
CviKI_1 RGCY 7 cut(s) 70, 80, 166, 209, 233, 303, 317
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 71, 223
DpnI GATC 4 cut(s) 7, 240, 261, 351
DpnII GATC 4 cut(s) 5, 238, 259, 349
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 191
Eco91I GGTNACC 1 cut(s) 338
EcoO65I GGTNACC 1 cut(s) 338
FaeI CATG 4 cut(s) 124, 266, 347, 356
FaiI YATR 5 cut(s) 122, 264, 345, 354, 358
FatI CATG 4 cut(s) 120, 262, 343, 352
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 3 cut(s) 135, 176, 184
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 2 cut(s) 233, 317
HapII CCGG 1 cut(s) 314
Hin1II CATG 4 cut(s) 124, 266, 347, 356
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 314
HphI GGTGA 2 cut(s) 112, 281
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 35, 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 292
HpyF3I CTNAG 2 cut(s) 71, 223
Hsp92II CATG 4 cut(s) 124, 266, 347, 356
Kzo9I GATC 4 cut(s) 5, 238, 259, 349
LmnI GCTCC 2 cut(s) 67, 113
LpnPI CCDG 7 cut(s) 83, 96, 155, 165, 219, 263, 327
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 22
MaeIII GTNAC 4 cut(s) 41, 245, 265, 338
MalI GATC 4 cut(s) 7, 240, 261, 351
MbiI CCGCTC 1 cut(s) 295
MboI GATC 4 cut(s) 5, 238, 259, 349
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 118, 180
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 2 cut(s) 43, 244
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 314
MwoI GCNNNNNNNGC 2 cut(s) 206, 292
NdeII GATC 4 cut(s) 5, 238, 259, 349
NlaIII CATG 4 cut(s) 124, 266, 347, 356
NlaIV GGNNCC 3 cut(s) 54, 177, 312
NmuCI GTSAC 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspEI GGTNACC 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 3 cut(s) 54, 177, 312
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 4 cut(s) 5, 238, 259, 349
SchI GAGTC 1 cut(s) 286
SduI GDGCHC 2 cut(s) 118, 180
SetI ASST 3 cut(s) 72, 82, 168
SfaNI GCATC 1 cut(s) 22
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 60
SsiI CCGC 2 cut(s) 284, 293
TaqI TCGA 1 cut(s) 8
TaqII GACCGA 1 cut(s) 173
TasI AATT 1 cut(s) 60
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.