FvH4_7g18500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016922
Physical Location & Seq
Forward (+)
15433987 .. 15435187
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18500.t1

Sequence Viewer

Length: 465 bp
ATGGATTCATTAGTGGAAGGTGTTACCTACAAGGTTGCAACCGTTATGCCCTTGGCTGCTGGCTTCCTTACCTTTGTGGCTGTGGAGTGCTTTGTTGATCAATTGGTCGCTCCAATCAAATTCACAGTTGGGCAGTACTTGGCCAAGTACCTTCTTGCCTGCAGTGGCCCTATGCTACAAGACCAACATCGAGAATCTGTTGAAGCAAGTGAAGAAGCTCAAGGCCGCAAGAGACATGGTGCGGTGCGCCAAGCTGCCGAAGACGCCAAACAGAGGGGCCAAGTTGCAATCAGAGCTGAAGTTGAGAAATGGCTGACCAGTGTGGACAAGCTCACCGAAGAGGTGACCAAATTCTTCGAGTACAAAGGTGATGCCAACGACGGCTGGAGGAACAAGGATGAGACAAGAGCAGCAGAGTCTGAAACCCAATCGGACTACAAAGTTGGAAGAGTATTGAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.23

Weight (kDa)

5.3

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016922)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18500
prunus_persica Prupe.7G003000_v2.0.a1
pyrus_communis pycom12g00240
rosa_chinensis RchiOBHm_Chr3g0497431
rosa_laevigata RLG00000022462 RLG00000022464
rosa_roxburghii Rroxscaffold_166G00440670 Rroxscaffold_6G00388050
rosa_rugosa Rorug03G0293000 Rorug03G0293000
rosa_samantha Rh3AG336500 Rh3BG374800 Rh3CG370700 Rh3DG371600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 226, 242
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 119, 350
AcuI CTGAAG 1 cut(s) 318
AcyI GRCGYC 1 cut(s) 264
AfaI GTAC 3 cut(s) 137, 149, 362
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 2 cut(s) 203, 457
AluBI AGCT 4 cut(s) 218, 254, 296, 331
AluI AGCT 4 cut(s) 218, 254, 296, 331
Alw26I GTCTC 2 cut(s) 226, 395
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 4 cut(s) 141, 166, 223, 277
ApeKI GCWGC 3 cut(s) 56, 254, 410
ApoI RAATTY 2 cut(s) 119, 350
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 167, 277
AsuHPI GGTGA 3 cut(s) 325, 355, 380
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 43, 241, 422
BceAI ACGGC 1 cut(s) 397
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 226, 395
BfmI CTRYAG 1 cut(s) 160
BisI GCNGC 4 cut(s) 57, 226, 255, 411
BlsI GCNGC 4 cut(s) 58, 227, 256, 412
BmcAI AGTACT 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 167, 277
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 3 cut(s) 43, 241, 422
BshFI GGCC 4 cut(s) 143, 168, 225, 279
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 2 cut(s) 226, 395
BsnI GGCC 4 cut(s) 143, 168, 225, 279
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 2 cut(s) 226, 242
BspANI GGCC 4 cut(s) 143, 168, 225, 279
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 43, 127
Bst6I CTCTTC 2 cut(s) 333, 442
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 2 cut(s) 61, 160
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 226, 395
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 263, 293
BstPI GGTNACC 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 160
BstV1I GCAGC 3 cut(s) 43, 241, 422
BstV2I GAAGAC 1 cut(s) 267
BsuRI GGCC 4 cut(s) 143, 168, 225, 279
BtsCI GGATG 1 cut(s) 403
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 2 cut(s) 169, 325
Cac8I GCNNGC 2 cut(s) 61, 160
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 167, 277
CseI GACGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 136, 148, 361
CviAII CATG 1 cut(s) 236
CviQI GTAC 3 cut(s) 136, 148, 361
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 333, 442
EarI CTCTTC 2 cut(s) 333, 442
Eco130I CCWWGG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 47, 173, 237
FatI CATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 57, 226, 255, 411
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 4 cut(s) 57, 226, 255, 411
GlaI GCGC 1 cut(s) 248
GluI GCNGC 4 cut(s) 57, 226, 255, 411
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 4 cut(s) 143, 168, 225, 279
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 249
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HinfI GANTC 3 cut(s) 5, 194, 416
HphI GGTGA 3 cut(s) 325, 355, 380
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 293, 421, 433
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 2 cut(s) 11, 161
HpyCH4III ACNGT 2 cut(s) 43, 127
HpyCH4V TGCA 3 cut(s) 38, 162, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 293
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 45, 172, 331, 370
Lsp1109I GCAGC 3 cut(s) 43, 241, 422
LweI GCATC 1 cut(s) 361
MaeIII GTNAC 2 cut(s) 22, 343
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 5 cut(s) 224, 272, 346, 350, 459
MfeI CAATTG 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 3 cut(s) 101, 119, 350
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 3 cut(s) 267, 334, 381
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 263, 293
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 278
NmuCI GTSAC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 5, 194
PkrI GCNGC 4 cut(s) 58, 227, 256, 412
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PspEI GGTNACC 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 167, 277
PstI CTGCAG 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 419
RsaI GTAC 3 cut(s) 137, 149, 362
RsaNI GTAC 3 cut(s) 136, 148, 361
SatI GCNGC 4 cut(s) 57, 226, 255, 411
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 167, 277
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 425
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 3 cut(s) 101, 119, 350
SsiI CCGC 2 cut(s) 226, 242
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 43, 127
TaqI TCGA 2 cut(s) 190, 357
TasI AATT 3 cut(s) 101, 119, 350
TatI WGTACW 2 cut(s) 135, 360
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 2 cut(s) 5, 194
TscAI CASTG 2 cut(s) 169, 325
TseFI GTSAC 1 cut(s) 343
TseI GCWGC 3 cut(s) 56, 254, 410
Tsp45I GTSAC 1 cut(s) 343
TspRI CASTG 2 cut(s) 169, 325
XapI RAATTY 2 cut(s) 119, 350
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.