Rroxscaffold_166G00440670

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000166
OG0016922
Physical Location & Seq
Forward (+)
2236 .. 2772
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_166G00440670.1

Sequence Viewer

Length: 537 bp
ATGGATTCATTAATGGAAGGTGTAACCTACAAGGTTGCAACCATTACGCCCTTGGCTGCTGGGTTCCTTACATTTGTTGCTGTGGAGTGCTTTGTTGATCAATTGGTTGCTCCAATCAAACCCACAGTTGGGCAGTACTTGGCCAAGTACCTTCTTGCCTGCAGTGGACCTGTGGTCACCAAATACCTGAACATCTACGTTGCTTACATTCTCAGCTACAAGACCAACATCGAGAATCTGTTGAAACAAGTAAAAAAGCTCAAGGCCGCAAGAGACATGGTGCGCCAAGCTGTCGAAGACGCCAAACAGAGGGGGCAGGTGGCAGTCAGAGCTGAAGTTGAGAAATGGCTGACCAGCGTGGACAGGCTCACCGAAGAGGTGACCAAATTCTTCGAGTACAAAGGTGATGCCAATGATGGCTGGTTTCGTTGGTTGTATGGCTTGTTGATGTCGCGATACCAATTGAGCAAGAAGGCAAACAAGATGATAGAGCATCTTGTTAAACTCCAAGCTGATGGAGCCTTTCTAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

178

Amino Acids

20.2

Weight (kDa)

9.21

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016922)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18500
prunus_persica Prupe.7G003000_v2.0.a1
pyrus_communis pycom12g00240
rosa_chinensis RchiOBHm_Chr3g0497431
rosa_laevigata RLG00000022462 RLG00000022464
rosa_roxburghii Rroxscaffold_166G00440670 Rroxscaffold_6G00388050
rosa_rugosa Rorug03G0293000 Rorug03G0293000
rosa_samantha Rh3AG336500 Rh3BG374800 Rh3CG370700 Rh3DG371600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AccII CGCG 1 cut(s) 454
AciI CCGC 1 cut(s) 267
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 386
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 3 cut(s) 137, 149, 398
AfiI CCNNNNNNNGG 3 cut(s) 128, 129, 309
AgsI TTSAA 1 cut(s) 244
AhdI GACNNNNNGTC 1 cut(s) 173
AluBI AGCT 5 cut(s) 216, 259, 290, 332, 512
AluI AGCT 5 cut(s) 216, 259, 290, 332, 512
Alw26I GTCTC 1 cut(s) 267
AoxI GGCC 2 cut(s) 141, 264
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 386
AseI ATTAAT 2 cut(s) 11, 531
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 169, 361, 391, 416
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 410, 509
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 2 cut(s) 57, 267
BlsI GCNGC 2 cut(s) 58, 268
BmcAI AGTACT 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 65, 520
BmsI GCATC 2 cut(s) 397, 502
BpiI GAAGAC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 129, 309
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 128, 129, 309
BseMII CTCAG 1 cut(s) 226
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 454
BshFI GGCC 2 cut(s) 143, 266
BslI CCNNNNNNNGG 3 cut(s) 128, 129, 309
BsmAI GTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 143, 266
Bsp143I GATC 1 cut(s) 97
Bsp68I TCGCGA 1 cut(s) 454
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 143, 266
BspCNI CTCAG 1 cut(s) 225
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 65, 520
BspMAI CTGCAG 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 212
BstEII GGTNACC 2 cut(s) 175, 379
BstFNI CGCG 1 cut(s) 454
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 329, 518
BstPI GGTNACC 2 cut(s) 175, 379
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 454
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 515
BsuRI GGCC 2 cut(s) 143, 266
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
BtuMI TCGCGA 1 cut(s) 454
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 308
Csp6I GTAC 3 cut(s) 136, 148, 397
CviAII CATG 1 cut(s) 277
CviQI GTAC 3 cut(s) 136, 148, 397
DdeI CTNAG 1 cut(s) 212
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DriI GACNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 354
Eco91I GGTNACC 2 cut(s) 175, 379
EcoO65I GGTNACC 2 cut(s) 175, 379
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 438
FatI CATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 57, 267
Fsp4HI GCNGC 2 cut(s) 57, 267
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 57, 267
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 143, 266
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 2 cut(s) 5, 235
HphI GGTGA 4 cut(s) 169, 361, 391, 416
Hpy166II GTNNAC 2 cut(s) 167, 361
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 2 cut(s) 232, 453
Hpy8I GTNNAC 2 cut(s) 167, 361
HpyAV CCTTC 3 cut(s) 11, 161, 466
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 38, 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 518
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 115, 518
LpnPI CCDG 8 cut(s) 45, 172, 183, 200, 302, 349, 367, 406
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 397, 502
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 22, 175, 379
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 308, 382, 386
MfeI CAATTG 2 cut(s) 101, 461
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 5 cut(s) 101, 386, 461, 528, 532
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 2 cut(s) 303, 370
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 3 cut(s) 11, 501, 531
Msp20I TGGCCA 1 cut(s) 143
MunI CAATTG 2 cut(s) 101, 461
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 2 cut(s) 329, 518
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 65, 520
NmuCI GTSAC 2 cut(s) 175, 379
NruI TCGCGA 1 cut(s) 454
PaqCI CACCTGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 5, 235
PkrI GCNGC 2 cut(s) 58, 268
PshBI ATTAAT 2 cut(s) 11, 531
PspEI GGTNACC 2 cut(s) 175, 379
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 65, 520
PspPI GGNCC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 164
RruI TCGCGA 1 cut(s) 454
RsaI GTAC 3 cut(s) 137, 149, 398
RsaNI GTAC 3 cut(s) 136, 148, 397
SaqAI TTAA 3 cut(s) 11, 501, 531
SatI GCNGC 2 cut(s) 57, 267
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 167
ScaI AGTACT 1 cut(s) 137
SfaNI GCATC 2 cut(s) 397, 502
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 5 cut(s) 101, 386, 461, 528, 532
SsiI CCGC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 231, 294, 393
TasI AATT 5 cut(s) 101, 386, 461, 528, 532
TatI WGTACW 2 cut(s) 135, 396
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 5, 235
Tru1I TTAA 3 cut(s) 11, 501, 531
Tru9I TTAA 3 cut(s) 11, 501, 531
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 175, 379
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 175, 379
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 2 cut(s) 11, 531
XapI RAATTY 1 cut(s) 386
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.