Prupe.7G003000_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016922
Physical Location & Seq
Forward (+)
354925 .. 356009
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G003000.1

Sequence Viewer

Length: 561 bp
ATGACTGGTAGTGTTGTTGTCCAGAATTTTTTAGAAGCTGGCACCAGAAAGATTGCTTCCCTCATGCCCTTGGCTGCAGGGTTTCTTACATTTGTGGGAATTGAGTGCTTTGTGGATCAATTGGTTGCTCCAATCAAACCAATAATTGGGCAGTACTTGGGCAAGTATCTGCTAGCCTGCAGTGGTCCTGTGGTGACCAAATACCTAGACATTTATGTTGCTTACATTCTAAGCTACAAGACCAACATTGAAAGCCTCTTGAAACAAGTCAAGAAGCTCAAGGCTACAAGAGACTTGGTGCTGCAAGCTGTTGAAGATGCAAAGAAGAGGGGAGAAGTGGTGGTCAGAGATGAAGTTGAGAAATGGCTGAGCAGCGTCGACCGGCTCACCAGTGAGGCTACCAAGTTTTTCGAATATAAAGGCGACGCCAACAGCGGGTGGTTTCGTTGGTTGTATGGCCTGTTGATGTCGCGGTACCAGTTGAGCAAGAAGGCAAAGAAGATGATAGAGCATCTTGTTCAGCTCCAAGCAGATGGAATATTTGCTAAGGTTTCTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

187

Amino Acids

20.92

Weight (kDa)

9.39

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016922)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18500
prunus_persica Prupe.7G003000_v2.0.a1
pyrus_communis pycom12g00240
rosa_chinensis RchiOBHm_Chr3g0497431
rosa_laevigata RLG00000022462 RLG00000022464
rosa_roxburghii Rroxscaffold_166G00440670 Rroxscaffold_6G00388050
rosa_rugosa Rorug03G0293000 Rorug03G0293000
rosa_samantha Rh3AG336500 Rh3BG374800 Rh3CG370700 Rh3DG371600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 474
AccB1I GGYRCC 2 cut(s) 41, 474
AccB7I CCANNNNNTGG 1 cut(s) 146
AccI GTMKAC 1 cut(s) 378
AccII CGCG 1 cut(s) 472
AciI CCGC 2 cut(s) 435, 472
AclWI GGATC 1 cut(s) 123
AcsI RAATTY 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 426
AfaI GTAC 2 cut(s) 155, 476
AfiI CCNNNNNNNGG 2 cut(s) 146, 435
AgsI TTSAA 3 cut(s) 251, 262, 314
AluBI AGCT 5 cut(s) 38, 234, 277, 308, 523
AluI AGCT 5 cut(s) 38, 234, 277, 308, 523
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 1 cut(s) 123
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 3 cut(s) 74, 301, 372
ApoI RAATTY 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 205, 379
AsuII TTCGAA 1 cut(s) 411
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 2 cut(s) 41, 474
BbvI GCAGC 3 cut(s) 61, 288, 384
BccI CCATC 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 285
BfaI CTAG 2 cut(s) 173, 206
BfmI CTRYAG 2 cut(s) 75, 178
BisI GCNGC 3 cut(s) 75, 302, 373
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 3 cut(s) 76, 303, 374
BmcAI AGTACT 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 2 cut(s) 43, 476
BmsI GCATC 2 cut(s) 307, 520
BmtI GCTAGC 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 546
Bpu1102I GCTNAGC 1 cut(s) 368
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 435
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 3 cut(s) 10, 390, 478
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 146, 435
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 3 cut(s) 10, 390, 478
BseXI GCAGC 3 cut(s) 61, 288, 384
Bsh1236I CGCG 1 cut(s) 472
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 459
BshNI GGYRCC 2 cut(s) 41, 474
BsiEI CGRYCG 1 cut(s) 382
BsiSI CCGG 1 cut(s) 382
BslI CCNNNNNNNGG 2 cut(s) 146, 435
BsmAI GTCTC 1 cut(s) 285
BsnI GGCC 1 cut(s) 459
Bsp119I TTCGAA 1 cut(s) 411
Bsp143I GATC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 368
BspACI CCGC 2 cut(s) 435, 472
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 360
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 43, 476
BspMAI CTGCAG 2 cut(s) 79, 182
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 123
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 41, 474
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 3 cut(s) 10, 390, 478
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 69
Bst6I CTCTTC 1 cut(s) 320
BstACI GRCGYC 1 cut(s) 426
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 4 cut(s) 40, 174, 178, 306
BstDEI CTNAG 3 cut(s) 230, 368, 546
BstEII GGTNACC 1 cut(s) 193
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 115
BstMCI CGRYCG 1 cut(s) 382
BstPI GGTNACC 1 cut(s) 193
BstSFI CTRYAG 2 cut(s) 75, 178
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 3 cut(s) 61, 288, 384
BstXI CCANNNNNNTGG 1 cut(s) 533
BsuRI GGCC 1 cut(s) 459
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 187, 397
Cac8I GCNNGC 4 cut(s) 40, 174, 178, 306
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 2 cut(s) 364, 434
Csp6I GTAC 2 cut(s) 154, 475
CviAII CATG 1 cut(s) 64
CviQI GTAC 2 cut(s) 154, 475
DdeI CTNAG 3 cut(s) 230, 368, 546
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco130I CCWWGG 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 185
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 67
FaiI YATR 4 cut(s) 65, 216, 417, 456
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 428
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 75, 302, 373
Fsp4HI GCNGC 3 cut(s) 75, 302, 373
FspBI CTAG 2 cut(s) 173, 206
GluI GCNGC 3 cut(s) 75, 302, 373
HaeIII GGCC 1 cut(s) 459
HapII CCGG 1 cut(s) 382
HgaI GACGC 2 cut(s) 364, 434
Hin1I GRCGYC 1 cut(s) 426
Hin1II CATG 1 cut(s) 67
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HpaII CCGG 1 cut(s) 382
HphI GGTGA 2 cut(s) 205, 379
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 3 cut(s) 22, 259, 271
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 2 cut(s) 380, 428
HpyAV CCTTC 1 cut(s) 484
HpyCH4V TGCA 4 cut(s) 77, 180, 304, 320
HpyF3I CTNAG 3 cut(s) 230, 368, 546
Hsp92I GRCGYC 1 cut(s) 426
Hsp92II CATG 1 cut(s) 67
KpnI GGTACC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 115
LmnI GCTCC 2 cut(s) 133, 528
Lsp1109I GCAGC 3 cut(s) 61, 288, 384
LweI GCATC 2 cut(s) 307, 520
MaeI CTAG 2 cut(s) 173, 206
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 326, 337, 511
MfeI CAATTG 1 cut(s) 119
MluCI AATT 5 cut(s) 25, 99, 119, 144, 556
MnlI CCTC 4 cut(s) 71, 266, 321, 388
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 1 cut(s) 382
MunI CAATTG 1 cut(s) 119
MvnI CGCG 1 cut(s) 472
NdeII GATC 1 cut(s) 115
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 43, 476
NmuCI GTSAC 1 cut(s) 193
NspV TTCGAA 1 cut(s) 411
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 3 cut(s) 76, 303, 374
PspEI GGTNACC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 43, 476
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 2 cut(s) 79, 182
RsaI GTAC 2 cut(s) 155, 476
RsaNI GTAC 2 cut(s) 154, 475
SalI GTCGAC 1 cut(s) 377
SatI GCNGC 3 cut(s) 75, 302, 373
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 1 cut(s) 155
SetI ASST 7 cut(s) 40, 207, 236, 279, 310, 525, 552
SfaNI GCATC 2 cut(s) 307, 520
SfcI CTRYAG 2 cut(s) 75, 178
SfuI TTCGAA 1 cut(s) 411
SinI GGWCC 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 5 cut(s) 25, 99, 119, 144, 556
SsiI CCGC 2 cut(s) 435, 472
SspI AATATT 1 cut(s) 540
SspMI CTAG 2 cut(s) 173, 206
StyI CCWWGG 1 cut(s) 69
TaqI TCGA 2 cut(s) 378, 411
TasI AATT 5 cut(s) 25, 99, 119, 144, 556
TatI WGTACW 1 cut(s) 153
TscAI CASTG 2 cut(s) 187, 397
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 74, 301, 372
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 366
TspRI CASTG 2 cut(s) 187, 397
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 2 cut(s) 173, 206
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.