RLG00000022464

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016922
Physical Location & Seq
Reverse (-)
803206 .. 803730
525 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022464

Sequence Viewer

Length: 525 bp
ATGGACGGTGTAACCTACAAGGTTGCAACCATTACGCCCTTGGCTGCTGGGTTCCTTACATTTGTTGCTGTGGAGTGCTTTGTTGATCAATTGGTTGCTCCAATCAAACCTACAGTTGGGCAGTACTTGGCCAAGTACCTCCTTGCCTGCAGTGGACCTGTGGTCACCAAATACCTGAACATCTACGTTGCTTACATTCTCAGCTACAAGACCAACATCGAGAATCTGTTGAAACAAGTAAAGAAGCTCAAGGCCGCAAGAGACATGGTGCGCCAAGCTGTCGAAGACGCCAAACAGAGGGGGCAGGTGGCAGTCAGAGCTGAAGTTGAGAAATGGCTGAGCAGCGTGGACAGGCTCACCGAAGAGGTGACCAGATTCTTCGAGTACAAAGGTGATGCCAATGACGGCTGGTTTCGTTGGTTGTATGGCTTGTTGATGTCGCGATACCAATTGAGCAAGAAGGCAAACAAGATGATAGAGCATCTTGTTCAACTCCAAGCTGATGGAGCCTTTCTAATTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

175

Amino Acids

19.75

Weight (kDa)

9.24

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016922)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18500
prunus_persica Prupe.7G003000_v2.0.a1
pyrus_communis pycom12g00240
rosa_chinensis RchiOBHm_Chr3g0497431
rosa_laevigata RLG00000022462 RLG00000022464
rosa_roxburghii Rroxscaffold_166G00440670 Rroxscaffold_6G00388050
rosa_rugosa Rorug03G0293000 Rorug03G0293000
rosa_samantha Rh3AG336500 Rh3BG374800 Rh3CG370700 Rh3DG371600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 295
AccII CGCG 1 cut(s) 442
AciI CCGC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 342
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 3 cut(s) 125, 137, 386
AfiI CCNNNNNNNGG 2 cut(s) 116, 297
AgsI TTSAA 2 cut(s) 232, 491
AhdI GACNNNNNGTC 1 cut(s) 161
AluBI AGCT 5 cut(s) 204, 247, 278, 320, 500
AluI AGCT 5 cut(s) 204, 247, 278, 320, 500
Alw26I GTCTC 1 cut(s) 255
AoxI GGCC 2 cut(s) 129, 252
ApeKI GCWGC 2 cut(s) 44, 342
AseI ATTAAT 1 cut(s) 519
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 4 cut(s) 157, 349, 379, 404
AvaII GGWCC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 31, 354
BccI CCATC 1 cut(s) 497
BceAI ACGGC 1 cut(s) 421
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 255
BfmI CTRYAG 2 cut(s) 111, 148
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 3 cut(s) 45, 255, 343
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 3 cut(s) 46, 256, 344
BmcAI AGTACT 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 53, 508
BmsI GCATC 2 cut(s) 385, 490
BpiI GAAGAC 1 cut(s) 291
Bpu1102I GCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 297
BseDI CCNNGG 1 cut(s) 39
BseLI CCNNNNNNNGG 2 cut(s) 116, 297
BseMII CTCAG 2 cut(s) 214, 329
BseXI GCAGC 2 cut(s) 31, 354
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 442
BshFI GGCC 2 cut(s) 131, 254
BslI CCNNNNNNNGG 2 cut(s) 116, 297
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 2 cut(s) 131, 254
Bsp143I GATC 1 cut(s) 85
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp68I TCGCGA 1 cut(s) 442
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 131, 254
BspCNI CTCAG 2 cut(s) 213, 330
BspFNI CGCG 1 cut(s) 442
BspLI GGNNCC 2 cut(s) 53, 508
BspMAI CTGCAG 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 1 cut(s) 85
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 8, 115
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 200, 338
BstEII GGTNACC 2 cut(s) 163, 367
BstFNI CGCG 1 cut(s) 442
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 317, 506
BstPI GGTNACC 2 cut(s) 163, 367
BstSFI CTRYAG 2 cut(s) 111, 148
BstUI CGCG 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 31, 354
BstV2I GAAGAC 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 503
BsuRI GGCC 2 cut(s) 131, 254
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
BtuMI TCGCGA 1 cut(s) 442
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 296
Csp6I GTAC 3 cut(s) 124, 136, 385
CviAII CATG 1 cut(s) 265
CviQI GTAC 3 cut(s) 124, 136, 385
DdeI CTNAG 2 cut(s) 200, 338
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DriI GACNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 357
Eam1105I GACNNNNNGTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 342
Eco91I GGTNACC 2 cut(s) 163, 367
EcoO65I GGTNACC 2 cut(s) 163, 367
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 268
FaiI YATR 2 cut(s) 266, 426
FatI CATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 3 cut(s) 45, 255, 343
Fsp4HI GCNGC 3 cut(s) 45, 255, 343
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 45, 255, 343
GsaI CCCAGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 131, 254
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HinfI GANTC 2 cut(s) 223, 375
HphI GGTGA 4 cut(s) 157, 349, 379, 404
Hpy166II GTNNAC 2 cut(s) 155, 349
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 220, 441
Hpy8I GTNNAC 2 cut(s) 155, 349
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 2 cut(s) 8, 115
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 26, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 506
HpyF3I CTNAG 2 cut(s) 200, 338
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 103, 506
LpnPI CCDG 8 cut(s) 33, 160, 171, 188, 290, 337, 385, 394
Lsp1109I GCAGC 2 cut(s) 31, 354
LweI GCATC 2 cut(s) 385, 490
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 10, 163, 367
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 296, 370, 374
MfeI CAATTG 2 cut(s) 89, 449
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 4 cut(s) 89, 449, 516, 520
MluNI TGGCCA 1 cut(s) 131
MnlI CCTC 3 cut(s) 149, 291, 358
Mox20I TGGCCA 1 cut(s) 131
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 131
MunI CAATTG 2 cut(s) 89, 449
MvnI CGCG 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 317, 506
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 53, 508
NmuCI GTSAC 2 cut(s) 163, 367
NruI TCGCGA 1 cut(s) 442
PaqCI CACCTGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 223, 375
PkrI GCNGC 3 cut(s) 46, 256, 344
PshBI ATTAAT 1 cut(s) 519
PspEI GGTNACC 2 cut(s) 163, 367
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 53, 508
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 152
RruI TCGCGA 1 cut(s) 442
RsaI GTAC 3 cut(s) 125, 137, 386
RsaNI GTAC 3 cut(s) 124, 136, 385
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 3 cut(s) 45, 255, 343
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 155
ScaI AGTACT 1 cut(s) 125
SfaNI GCATC 2 cut(s) 385, 490
SfcI CTRYAG 2 cut(s) 111, 148
SinI GGWCC 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 4 cut(s) 89, 449, 516, 520
SsiI CCGC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 8, 115
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 219, 282, 381
TasI AATT 4 cut(s) 89, 449, 516, 520
TatI WGTACW 2 cut(s) 123, 384
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 223, 375
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 2 cut(s) 163, 367
TseI GCWGC 2 cut(s) 44, 342
Tsp45I GTSAC 2 cut(s) 163, 367
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 155
VspI ATTAAT 1 cut(s) 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.