RLG00000022462

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0016922
Physical Location & Seq
Reverse (-)
784697 .. 785391
695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022462

Sequence Viewer

Length: 498 bp
ATGGATTCATTCATGGAAGGTGTAACCTACAAGGTTGCAACCATTACGCCCTTGGCTGCTGGGTTCCTTACATTTGTTGCTGTGGAGTTCTTTGTTGATCAATTGGTTGCTCCAATCAAACCTACAGTTGGGCAGTACTTGGCCAAGTACCTTCTTGCGTGCAGTGGACCTGTGGTCACCAAATACTTGAACATCTACGTTGCTTACATTCTCAGCTACAAGACCAACATCGACAATCTGTTCAAACAAGTAAAGAAGCTCAAGGCCGCAAGAGACATGGTGCGCCAAGCTGTCGAAGACGCCAAACAGAGGAGGCAGGTGGCAATTAAAGCTGAAGTTGAGAAATGGCTGGCCAGCGTGGACAGGCTCACCGAAGAGGTGACCAGATTCTTCGAGTACAAAGGTGATGCCAATGATGGCTGGTTTCGTTTGTTGTATGATGTGATCAATGACAATGTGAACAATGAGTCCCGATTGATGTTCTTAAATGGAAGTTGA

Protein Analysis

166

Amino Acids

18.83

Weight (kDa)

8.55

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016922)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18500
prunus_persica Prupe.7G003000_v2.0.a1
pyrus_communis pycom12g00240
rosa_chinensis RchiOBHm_Chr3g0497431
rosa_laevigata RLG00000022462 RLG00000022464
rosa_roxburghii Rroxscaffold_166G00440670 Rroxscaffold_6G00388050
rosa_rugosa Rorug03G0293000 Rorug03G0293000
rosa_samantha Rh3AG336500 Rh3BG374800 Rh3CG370700 Rh3DG371600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 307
Acc36I ACCTGC 1 cut(s) 307
AciI CCGC 1 cut(s) 267
AcoI YGGCCR 2 cut(s) 141, 351
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 3 cut(s) 137, 149, 398
AfiI CCNNNNNNNGG 2 cut(s) 128, 309
AgsI TTSAA 2 cut(s) 190, 244
AhdI GACNNNNNGTC 1 cut(s) 173
AloI GAACNNNNNNTCC 2 cut(s) 452, 484
AluBI AGCT 4 cut(s) 216, 259, 290, 332
AluI AGCT 4 cut(s) 216, 259, 290, 332
Alw26I GTCTC 1 cut(s) 267
AoxI GGCC 3 cut(s) 141, 264, 351
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 169, 361, 391, 416
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 2 cut(s) 143, 353
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 410
BclI TGATCA 2 cut(s) 97, 444
BcoDI GTCTC 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 307
BisI GCNGC 2 cut(s) 57, 267
BlsI GCNGC 2 cut(s) 58, 268
BmcAI AGTACT 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 167
BmeRI GACNNNNNGTC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 65
BmsI GCATC 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 309
BseDI CCNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 128, 309
BseMII CTCAG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 43
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 181
BshFI GGCC 3 cut(s) 143, 266, 353
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 128, 309
BsmAI GTCTC 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 3 cut(s) 143, 266, 353
Bsp143I GATC 2 cut(s) 97, 444
BspACI CCGC 1 cut(s) 267
BspANI GGCC 3 cut(s) 143, 266, 353
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 65
BspMI ACCTGC 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 97, 444
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 300
BstC8I GCNNGC 3 cut(s) 160, 351, 355
BstDEI CTNAG 1 cut(s) 212
BstEII GGTNACC 2 cut(s) 175, 379
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 2 cut(s) 100, 447
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 2 cut(s) 97, 444
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstPI GGTNACC 2 cut(s) 175, 379
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 303
BsuRI GGCC 3 cut(s) 143, 266, 353
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 160, 351, 355
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 308
Csp6I GTAC 3 cut(s) 136, 148, 397
CviAII CATG 2 cut(s) 13, 277
CviQI GTAC 3 cut(s) 136, 148, 397
DdeI CTNAG 1 cut(s) 212
DpnI GATC 2 cut(s) 99, 446
DpnII GATC 2 cut(s) 97, 444
DriI GACNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 2 cut(s) 141, 351
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 354
Eco91I GGTNACC 2 cut(s) 175, 379
EcoO65I GGTNACC 2 cut(s) 175, 379
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 2 cut(s) 16, 280
FaiI YATR 3 cut(s) 14, 278, 438
FaqI GGGAC 1 cut(s) 454
FatI CATG 2 cut(s) 12, 276
FbaI TGATCA 2 cut(s) 97, 444
Fnu4HI GCNGC 2 cut(s) 57, 267
Fsp4HI GCNGC 2 cut(s) 57, 267
GlaI GCGC 1 cut(s) 284
GluI GCNGC 2 cut(s) 57, 267
GsaI CCCAGC 1 cut(s) 63
HaeIII GGCC 3 cut(s) 143, 266, 353
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 2 cut(s) 16, 280
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 3 cut(s) 5, 387, 467
HphI GGTGA 4 cut(s) 169, 361, 391, 416
Hpy166II GTNNAC 3 cut(s) 167, 361, 460
Hpy188III TCNNGA 1 cut(s) 471
Hpy8I GTNNAC 3 cut(s) 167, 361, 460
HpyAV CCTTC 2 cut(s) 11, 161
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 38, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 212
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 16, 280
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 97, 444
Kzo9I GATC 2 cut(s) 97, 444
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 8 cut(s) 45, 183, 302, 335, 349, 367, 397, 406
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 397
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 3 cut(s) 22, 175, 379
MalI GATC 2 cut(s) 99, 446
MboI GATC 2 cut(s) 97, 444
MboII GAAGA 3 cut(s) 308, 382, 386
MfeI CAATTG 1 cut(s) 101
MlsI TGGCCA 2 cut(s) 143, 353
MluCI AATT 2 cut(s) 101, 324
MluNI TGGCCA 2 cut(s) 143, 353
MlyI GAGTC 1 cut(s) 476
MnlI CCTC 3 cut(s) 303, 306, 370
Mox20I TGGCCA 2 cut(s) 143, 353
MscI TGGCCA 2 cut(s) 143, 353
MseI TTAA 2 cut(s) 327, 485
Msp20I TGGCCA 2 cut(s) 143, 353
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 2 cut(s) 97, 444
NlaIII CATG 2 cut(s) 16, 280
NlaIV GGNNCC 1 cut(s) 65
NmuCI GTSAC 2 cut(s) 175, 379
PaqCI CACCTGC 1 cut(s) 307
PfeI GAWTC 2 cut(s) 5, 387
PkrI GCNGC 2 cut(s) 58, 268
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PspEI GGTNACC 2 cut(s) 175, 379
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 65
PspPI GGNCC 1 cut(s) 167
RsaI GTAC 3 cut(s) 137, 149, 398
RsaNI GTAC 3 cut(s) 136, 148, 397
SaqAI TTAA 2 cut(s) 327, 485
SatI GCNGC 2 cut(s) 57, 267
Sau3AI GATC 2 cut(s) 97, 444
Sau96I GGNCC 1 cut(s) 167
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 476
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 2 cut(s) 101, 324
SsiI CCGC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 231, 294, 393
TasI AATT 2 cut(s) 101, 324
TatI WGTACW 2 cut(s) 135, 396
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 5, 387
Tru1I TTAA 2 cut(s) 327, 485
Tru9I TTAA 2 cut(s) 327, 485
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 175, 379
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 2 cut(s) 175, 379
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.